Miyakogusa Predicted Gene

Lj2g3v3021710.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3021710.1 tr|G7KCW0|G7KCW0_MEDTR Dihydropyrimidinase
OS=Medicago truncatula GN=MTR_5g089200 PE=4
SV=1,82.2,0,DIHYDROPYRIMIDINASE,NULL; AMINOHYDROLASE,NULL; seg,NULL;
Metallo-dependent hydrolases,NULL; Composit,CUFF.39617.1
         (339 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12200.1 | Symbols: PYD2 | pyrimidine 2 | chr5:3941700-394472...   474   e-134

>AT5G12200.1 | Symbols: PYD2 | pyrimidine 2 | chr5:3941700-3944727
           REVERSE LENGTH=531
          Length = 531

 Score =  474 bits (1220), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/304 (74%), Positives = 258/304 (84%), Gaps = 1/304 (0%)

Query: 30  NQFCEAGIAESACGTGIPSSSKLLIKGGTVVNAHHQHVADVYVEDGIIVAXXXXXXXXXX 89
            QFC AG  E+  G+   SS+++LIKGGTVVNAHHQ +ADVYVE+GIIVA          
Sbjct: 26  TQFCSAG-RENGVGSCGVSSTRILIKGGTVVNAHHQELADVYVENGIIVAVQPNIKVGDE 84

Query: 90  XXXXXATGKFVMPGGIDPHTHLAIEGLDITSVDDFFSGQAAALAGGTTMHIDFIIPSNGN 149
                ATGKFVMPGGIDPHTHLA+E +   ++DDFFSGQAAALAGGTTMHIDF+IP NGN
Sbjct: 85  VTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNGN 144

Query: 150 LSAAFDVYEKKAKKSCMDYGFHVAITKWDEGVSRDMELMVKEKGINSFKFFMAYKGIVMV 209
           L A F+ YE K+++SCMDYGFH+AITKWDEGVSRDME++VKEKGINSFKFF+AYKG +MV
Sbjct: 145 LVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEMLVKEKGINSFKFFLAYKGSLMV 204

Query: 210 NDELLLKGFKKCKSLGALAMVHAENGDAVYEGQKKMIELGITGPEGHPLSRPAALEGEAT 269
            D+LLL+G K+CKSLGALAMVHAENGDAV+EGQK+MIELGITGPEGH LSRP  LEGEAT
Sbjct: 205 TDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPVLEGEAT 264

Query: 270 SRAIRLADFINTPLYVVHVMSIDAMEEIAKARKSGQRVIGEPIVSGLALDDSWLWHPDFE 329
           +RAIRLA FINTPLYVVHVMS+DAM+EIAKARKSGQ+VIGEP+VSGL LDD WLW PDF 
Sbjct: 265 ARAIRLARFINTPLYVVHVMSVDAMDEIAKARKSGQKVIGEPVVSGLILDDHWLWDPDFT 324

Query: 330 TAAK 333
            A+K
Sbjct: 325 IASK 328