Miyakogusa Predicted Gene

Lj2g3v3018630.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3018630.1 CUFF.39737.1
         (333 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26850.1 | Symbols:  | F-box family protein | chr2:11449369-1...   414   e-116
AT2G32560.1 | Symbols:  | F-box family protein | chr2:13824820-1...   408   e-114
AT2G41170.1 | Symbols:  | F-box family protein | chr2:17159310-1...   358   3e-99

>AT2G26850.1 | Symbols:  | F-box family protein |
           chr2:11449369-11450889 REVERSE LENGTH=371
          Length = 371

 Score =  414 bits (1064), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/315 (61%), Positives = 242/315 (76%), Gaps = 3/315 (0%)

Query: 20  EMSVLDLPDLVLETILEKLPPSSLCQMAGVCRSLRERCVSDHLWERHMKQKWGRVVGSVA 79
           +MS+LDLPDL L+ ILE LPPS LC MA VC SLRERCVSDHLWE+H+K KWG+++G  A
Sbjct: 59  KMSILDLPDLPLDCILELLPPSELCTMARVCSSLRERCVSDHLWEKHLKTKWGKILGPSA 118

Query: 80  YREWKWHVASKRNVGSVRHGKQR-SLMRLVPLRWPFSWVRMKVETSYSSKQRGYVPPDSF 138
           ++EW+ +++S  ++ S  H      L +++ L    S +    +  +  +    +P DS 
Sbjct: 119 HKEWQCYLSSPYHLDSPHHKTSHLGLAKIISLMRSLSSIFR--DDDHRRRYPSSIPLDST 176

Query: 139 MTWYLALESGSFAFPAQVYNRENGHVGFMLSCYDAELSYDPSTDTFQARYPPHGRRAATV 198
           M +YL+LE+G F FPAQVYNRENGHVGFMLSCYDAELSYD  T+TFQARYPPHG+RA  V
Sbjct: 177 MNFYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTDTNTFQARYPPHGKRAIAV 236

Query: 199 EHGVLWERLRAPPVDTPPHDLHISDCLCDLHPGDHVEIQWRRNKEFPYGWWYGIVGHLES 258
           E  V WER+RA PVD  PH+L++SD L +L PGDH+EIQWRRNKEFPYGWWY +VGH+ES
Sbjct: 237 EKDVTWERIRAAPVDASPHNLYVSDSLNELKPGDHIEIQWRRNKEFPYGWWYSVVGHMES 296

Query: 259 CDGNENYCHCHNSDTVVLEFNQYTPDSRWRTTNISRKDHREEGNEADGFYGGIRKIKSEN 318
           CDGN N+C CHNS+ +VLEFNQYT  SRWR T I+R+DHRE+GNE DGFYGGIRKI  + 
Sbjct: 297 CDGNLNHCQCHNSEMMVLEFNQYTVGSRWRKTMINRRDHREKGNEEDGFYGGIRKINCKE 356

Query: 319 EISIWKKLWPSDVLD 333
           +I +WK+LWPS +L+
Sbjct: 357 DIEMWKRLWPSSILE 371


>AT2G32560.1 | Symbols:  | F-box family protein |
           chr2:13824820-13826761 FORWARD LENGTH=371
          Length = 371

 Score =  408 bits (1048), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/325 (60%), Positives = 241/325 (74%), Gaps = 23/325 (7%)

Query: 20  EMSVLDLPDLVLETILEKLPPSSLCQMAGVCRSLRERCVSDHLWERHMKQKWGRVVGSVA 79
           +MSVLDLP+L L+ IL+ LPPS LC MA VC SLRERCVSDHLWE+H+K KWG+++G  A
Sbjct: 59  QMSVLDLPELALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILGPAA 118

Query: 80  YREWKWHVASK--------RNVGSVRHGKQRSLMRLVPLRWPFSWVRMKVETSYSSKQRG 131
           +REW+ +++S            G++   K  SL+R            +        ++RG
Sbjct: 119 HREWQCYISSSTYHLDSPHHQTGNLGFAKIISLIR-----------SLSSVFREDKQRRG 167

Query: 132 Y---VPPDSFMTWYLALESGSFAFPAQVYNRENGHVGFMLSCYDAELSYDPSTDTFQARY 188
           Y   +P DS M+ YL+LE+G F FPAQVYNRENGHVGFMLSCYDAELSYD  TDTFQARY
Sbjct: 168 YASSLPLDSSMSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQARY 227

Query: 189 PPHGRRAATVEHGVLWERLRAPPVDTPPHDLHISDCLCDLHPGDHVEIQWRRNKEFPYGW 248
           PPHGRRA+ +E GV W+R+RA P+D  PH LH+SD L +L PGDH+EIQWRRNKEFPYGW
Sbjct: 228 PPHGRRASAIEKGVTWDRIRAAPIDASPHLLHVSDSLKELKPGDHIEIQWRRNKEFPYGW 287

Query: 249 WYGIVGHLESCDGNENYCHCHNSDTVVLEFNQYTPDSRWRTTNISRKDHREEGNEADGFY 308
           WYG+V HLESCDG+ N+CHCH S+TVVLEFNQYT  SRWR T I R DH+EEGNE DGFY
Sbjct: 288 WYGLVRHLESCDGDHNHCHCHLSETVVLEFNQYTVGSRWRRTMIMR-DHKEEGNEEDGFY 346

Query: 309 GGIRKIKSENEISIWKKLWPSDVLD 333
           GGIRK+  + EI++WK+ WP  +L+
Sbjct: 347 GGIRKLNCKEEIAMWKRHWPCSILE 371


>AT2G41170.1 | Symbols:  | F-box family protein |
           chr2:17159310-17160845 REVERSE LENGTH=371
          Length = 371

 Score =  358 bits (919), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 188/338 (55%), Positives = 230/338 (68%), Gaps = 16/338 (4%)

Query: 5   KKTHTSKVENVEDTQEMSVLDLPDLVLETILEKLPPSSLCQMAGVCRSLRERCVSDHLWE 64
           +K    K +N ED  +MS+LDLPDL L+ ILEKL PS LC M  VC  LR++CVSDHLWE
Sbjct: 41  RKETKRKKKNQEDENKMSLLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDHLWE 100

Query: 65  RHMKQKWGRVVGSVAYREWKWHVASKRNVGSVRHGKQRSLM-----RLVPLRWPFSWVRM 119
           +HM+ KWGR++G  A +EWK HVA+     +      R        R V    PF+W   
Sbjct: 101 KHMETKWGRLMGDAAIQEWKSHVATIMRCLTSSSSSSRKSKPNWSSRFVANLKPFAW--- 157

Query: 120 KVETSYSSKQRG----YVPPDSFMTWYLALESGSFAFPAQVYNRENGHVGFMLSCYDAEL 175
            + +++  + RG      P DS M WY  LE+G F FPAQVYNRENGHVGFM+SCYDA++
Sbjct: 158 -LSSNHGCENRGSSSYLAPIDSVMYWYSNLENGKFWFPAQVYNRENGHVGFMMSCYDAKI 216

Query: 176 SYDPSTDTFQARYPPHGRRAATVEHGVLWERLRAPPVDTPPHDLHISDCLCDLHPGDHVE 235
            YD  TDTFQARY  HGRRAA  E  V W+RLR    DT   DLH+SDCL  L PGDH E
Sbjct: 217 RYDFKTDTFQARYSAHGRRAA--EEKVTWQRLRPSQDDTKSRDLHVSDCLHGLRPGDHFE 274

Query: 236 IQWRRNKEFPYGWWYGIVGHLESCDGNENYCHCHNSDTVVLEFNQYTPDSRWRTTNISRK 295
           IQWRR KEFPYGWW+GIVGHL++CDG +N C C + + VV+EF Q+ P+S WR T I RK
Sbjct: 275 IQWRRTKEFPYGWWFGIVGHLQNCDGVQN-CRCDSDENVVMEFRQFRPESPWRRTVIKRK 333

Query: 296 DHREEGNEADGFYGGIRKIKSENEISIWKKLWPSDVLD 333
           DHRE GNE +GFYGG++K+ +E EIS WK+LWPS  L+
Sbjct: 334 DHRETGNEENGFYGGVKKLGTEEEISTWKQLWPSQALE 371