Miyakogusa Predicted Gene

Lj2g3v3018610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3018610.1 CUFF.39727.1
         (88 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12240.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    70   2e-13
AT5G12240.1 | Symbols:  | unknown protein; Has 1807 Blast hits t...    46   5e-06

>AT5G12240.2 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN:
          cellular_component unknown; EXPRESSED IN: 19 plant
          structures; EXPRESSED DURING: 10 growth stages. |
          chr5:3959120-3960777 REVERSE LENGTH=114
          Length = 114

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 47/88 (53%)

Query: 1  MDESEFQRLLQLFPVVRSRDYCAETXXXXXXXXXXAQDEELKEWQDAWDERDRDFENRGI 60
          MD+ EF+ LL LFPVVRSRD+ AE             D E+ EW DA    +        
Sbjct: 1  MDDQEFRSLLDLFPVVRSRDHRAELDSSKQSTSQSVVDREVSEWHDAPTVAEPKDLQYLK 60

Query: 61 TKHDSFWSKLKSEAARKVGTEEAERFCK 88
          T  D FW  LK+ A +KVG  EAERFCK
Sbjct: 61 TDQDKFWENLKAAAEKKVGGVEAERFCK 88


>AT5G12240.1 | Symbols:  | unknown protein; Has 1807 Blast hits to
           1807 proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:3959120-3960777 REVERSE LENGTH=168
          Length = 168

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 50/142 (35%), Gaps = 54/142 (38%)

Query: 1   MDESEFQRLLQLFPVVRSRDYCAETXXXXXXXXXXAQDEELKEWQDA---WDERDRDFEN 57
           MD+ EF+ LL LFPVVRSRD+ AE             D E+ EW DA    + +D  +  
Sbjct: 1   MDDQEFRSLLDLFPVVRSRDHRAELDSSKQSTSQSVVDREVSEWHDAPTVAEPKDLQYLK 60

Query: 58  RGITKHDSFWS------------------------------------------------- 68
                H  F+S                                                 
Sbjct: 61  TDQGMHHLFFSYFRISTKLPLAYWLVRLTSICISSQLFSAVSCVLKSVFGCSSSFKLYKF 120

Query: 69  --KLKSEAARKVGTEEAERFCK 88
              LK+ A +KVG  EAERFCK
Sbjct: 121 WENLKAAAEKKVGGVEAERFCK 142