Miyakogusa Predicted Gene

Lj2g3v2986050.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2986050.2 Non Chatacterized Hit- tr|I1JIR6|I1JIR6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9030
PE=,72.91,0,La,RNA-binding protein Lupus La; Domain in the RNA-binding
Lupus La protein;,RNA-binding protein Lup,CUFF.39560.2
         (926 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21160.2 | Symbols:  | LA RNA-binding protein | chr5:7198817-...   572   e-163
AT5G21160.3 | Symbols:  | LA RNA-binding protein | chr5:7198817-...   572   e-163
AT5G21160.1 | Symbols:  | LA RNA-binding protein | chr5:7199191-...   571   e-163
AT4G35890.1 | Symbols:  | winged-helix DNA-binding transcription...    96   1e-19
AT5G66100.1 | Symbols:  | winged-helix DNA-binding transcription...    90   8e-18
AT5G46250.1 | Symbols:  | RNA-binding protein | chr5:18755388-18...    75   3e-13
AT5G46250.2 | Symbols:  | RNA-binding protein | chr5:18755388-18...    74   4e-13
AT5G46250.3 | Symbols:  | RNA-binding protein | chr5:18755388-18...    74   4e-13
AT2G43970.2 | Symbols:  | RNA-binding protein | chr2:18205535-18...    54   5e-07
AT2G43970.1 | Symbols:  | RNA-binding protein | chr2:18205535-18...    54   6e-07

>AT5G21160.2 | Symbols:  | LA RNA-binding protein |
           chr5:7198817-7203879 REVERSE LENGTH=832
          Length = 832

 Score =  572 bits (1473), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 326/640 (50%), Positives = 405/640 (63%), Gaps = 79/640 (12%)

Query: 280 SIRGPHPRHFVSYPVNPTPQPMPPETLALRTSIIKQIEYYFSDENLQNDRYLISLMDEQG 339
           +IRGP+P  F  YPVN  P  + PE L LR  ++KQ+EYYFSDENL+ND YLISLMDE+G
Sbjct: 250 AIRGPYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEG 309

Query: 340 WVPISTVAGFKRVKRMSSDIAFIIDALQSSNTVEVQGDKIRKSNDWSKWIQVSSGNSGSS 399
           WVP   +AGFKRVK M+ D+ FI+ AL  SN+VEVQGD+IRK + WS W           
Sbjct: 310 WVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKWSDW----------- 358

Query: 400 TAQIQQSRLVKGADNSQNIDALGDKTMESSNEDHRDAAHNSVSMEHNQSNKDASQISHLK 459
                    +  +  S + + +GD   +S           S++   N  N          
Sbjct: 359 ---------IPASKKSTSAETIGDGDKDSPK---------SITSGDNFGNPSKGSSKPTV 400

Query: 460 REQDTESHHSNDVSHAVTGESVTFSSFDRTNNSCHSQETEPKIFDYDETENMDVLADME- 518
            +  +E   S+                 RTNN               ++ N+   AD + 
Sbjct: 401 SDFSSEGAQSS-----------------RTNNY--------------KSGNLKSSADEKR 429

Query: 519 -IGDHSNDFGNTFMLDEEIELEQKMLKKSEVSSPTRIDDEDDEMAVIEQDVQRLVIVTQN 577
            + D SNDF NTF+LDEE++LE +  +KS +S    I+ EDD+MAV +QD+Q+LVIVTQN
Sbjct: 430 NVEDLSNDFSNTFLLDEELDLEHRSPRKSGLSMSKSIEYEDDDMAVDDQDIQKLVIVTQN 489

Query: 578 GDPKQGSGDGGKESKSISNELASAINDGLYFYEQELKHRRSNRRKNN--CDNRGRNLKSP 635
                G+G GG E+K+I  ELAS INDGLY++EQELK +RS RRKNN   D +   +KS 
Sbjct: 490 SGKSDGAGIGGTEAKNIPKELASTINDGLYYFEQELKKKRSGRRKNNSHLDTKDGKIKSG 549

Query: 636 SQTSGVLNMKVGENTGGSSVPEEVGSNNSRRKQ-KVFPKQQSSIKQRFFSSNFRNHGTGR 694
                 LN K+GEN+  +   EE G   SRRKQ K   K  ++  +RFFSSN RN+G   
Sbjct: 550 EG----LNTKLGENSAANDGGEEHGIITSRRKQNKGTHKHHTAHARRFFSSNIRNNGNIS 605

Query: 695 NSHGVISESPPSNSVGFFFASTPPENHGLKPSIXXXXXXXXXXXXXXXXXXTPKSFPPFQ 754
            S         S+S+GFFF STPP++HG + S                    PKSFPPFQ
Sbjct: 606 ESPP-------SSSIGFFFGSTPPDSHGPRLSKLSSSPQCTLSGSSPPVGSLPKSFPPFQ 658

Query: 755 HPSHQLLEENGFKQQKYLKYQKRCLNERKKLGVGCSEEMNTLYRFWSYFLRDLFVPSMYN 814
           HPSHQLLEENGFKQ+KYLKY+KRCLNERKKLG GCSEEMN LYRFWSYFLRD FV SMY+
Sbjct: 659 HPSHQLLEENGFKQEKYLKYRKRCLNERKKLGSGCSEEMNHLYRFWSYFLRDTFVLSMYD 718

Query: 815 EFKKLAMEDAAANYHYGMECLFRFFSYGLEKEFRDDLYKDFEQLSLDFYHKGNLYGLEKY 874
           +F+K A+EDAA NY YG+ECLFRF+SYGLEK F +DLYKDFE+LSLDFYHKGNLYGLEKY
Sbjct: 719 DFQKFALEDAAGNYDYGLECLFRFYSYGLEKHFDEDLYKDFEKLSLDFYHKGNLYGLEKY 778

Query: 875 WAFHHYRKLRNQKEPLHKHPELEKLLREEYRSLEDFRAKE 914
           WAFHHY   R ++EP+ KHPELEKLL+EE+RS++DFRAKE
Sbjct: 779 WAFHHY---RGKEEPITKHPELEKLLKEEFRSIDDFRAKE 815


>AT5G21160.3 | Symbols:  | LA RNA-binding protein |
           chr5:7198817-7203879 REVERSE LENGTH=833
          Length = 833

 Score =  572 bits (1473), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 326/640 (50%), Positives = 405/640 (63%), Gaps = 79/640 (12%)

Query: 280 SIRGPHPRHFVSYPVNPTPQPMPPETLALRTSIIKQIEYYFSDENLQNDRYLISLMDEQG 339
           +IRGP+P  F  YPVN  P  + PE L LR  ++KQ+EYYFSDENL+ND YLISLMDE+G
Sbjct: 250 AIRGPYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEG 309

Query: 340 WVPISTVAGFKRVKRMSSDIAFIIDALQSSNTVEVQGDKIRKSNDWSKWIQVSSGNSGSS 399
           WVP   +AGFKRVK M+ D+ FI+ AL  SN+VEVQGD+IRK + WS W           
Sbjct: 310 WVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKWSDW----------- 358

Query: 400 TAQIQQSRLVKGADNSQNIDALGDKTMESSNEDHRDAAHNSVSMEHNQSNKDASQISHLK 459
                    +  +  S + + +GD   +S           S++   N  N          
Sbjct: 359 ---------IPASKKSTSAETIGDGDKDSPK---------SITSGDNFGNPSKGSSKPTV 400

Query: 460 REQDTESHHSNDVSHAVTGESVTFSSFDRTNNSCHSQETEPKIFDYDETENMDVLADME- 518
            +  +E   S+                 RTNN               ++ N+   AD + 
Sbjct: 401 SDFSSEGAQSS-----------------RTNNY--------------KSGNLKSSADEKR 429

Query: 519 -IGDHSNDFGNTFMLDEEIELEQKMLKKSEVSSPTRIDDEDDEMAVIEQDVQRLVIVTQN 577
            + D SNDF NTF+LDEE++LE +  +KS +S    I+ EDD+MAV +QD+Q+LVIVTQN
Sbjct: 430 NVEDLSNDFSNTFLLDEELDLEHRSPRKSGLSMSKSIEYEDDDMAVDDQDIQKLVIVTQN 489

Query: 578 GDPKQGSGDGGKESKSISNELASAINDGLYFYEQELKHRRSNRRKNN--CDNRGRNLKSP 635
                G+G GG E+K+I  ELAS INDGLY++EQELK +RS RRKNN   D +   +KS 
Sbjct: 490 SGKSDGAGIGGTEAKNIPKELASTINDGLYYFEQELKKKRSGRRKNNSHLDTKDGKIKSG 549

Query: 636 SQTSGVLNMKVGENTGGSSVPEEVGSNNSRRKQ-KVFPKQQSSIKQRFFSSNFRNHGTGR 694
                 LN K+GEN+  +   EE G   SRRKQ K   K  ++  +RFFSSN RN+G   
Sbjct: 550 EG----LNTKLGENSAANDGGEEHGIITSRRKQNKGTHKHHTAHARRFFSSNIRNNGNIS 605

Query: 695 NSHGVISESPPSNSVGFFFASTPPENHGLKPSIXXXXXXXXXXXXXXXXXXTPKSFPPFQ 754
            S         S+S+GFFF STPP++HG + S                    PKSFPPFQ
Sbjct: 606 ESPP-------SSSIGFFFGSTPPDSHGPRLSKLSSSPQCTLSGSSPPVGSLPKSFPPFQ 658

Query: 755 HPSHQLLEENGFKQQKYLKYQKRCLNERKKLGVGCSEEMNTLYRFWSYFLRDLFVPSMYN 814
           HPSHQLLEENGFKQ+KYLKY+KRCLNERKKLG GCSEEMN LYRFWSYFLRD FV SMY+
Sbjct: 659 HPSHQLLEENGFKQEKYLKYRKRCLNERKKLGSGCSEEMNHLYRFWSYFLRDTFVLSMYD 718

Query: 815 EFKKLAMEDAAANYHYGMECLFRFFSYGLEKEFRDDLYKDFEQLSLDFYHKGNLYGLEKY 874
           +F+K A+EDAA NY YG+ECLFRF+SYGLEK F +DLYKDFE+LSLDFYHKGNLYGLEKY
Sbjct: 719 DFQKFALEDAAGNYDYGLECLFRFYSYGLEKHFDEDLYKDFEKLSLDFYHKGNLYGLEKY 778

Query: 875 WAFHHYRKLRNQKEPLHKHPELEKLLREEYRSLEDFRAKE 914
           WAFHHY   R ++EP+ KHPELEKLL+EE+RS++DFRAKE
Sbjct: 779 WAFHHY---RGKEEPITKHPELEKLLKEEFRSIDDFRAKE 815


>AT5G21160.1 | Symbols:  | LA RNA-binding protein |
           chr5:7199191-7203879 REVERSE LENGTH=826
          Length = 826

 Score =  571 bits (1472), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 326/640 (50%), Positives = 405/640 (63%), Gaps = 79/640 (12%)

Query: 280 SIRGPHPRHFVSYPVNPTPQPMPPETLALRTSIIKQIEYYFSDENLQNDRYLISLMDEQG 339
           +IRGP+P  F  YPVN  P  + PE L LR  ++KQ+EYYFSDENL+ND YLISLMDE+G
Sbjct: 250 AIRGPYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEG 309

Query: 340 WVPISTVAGFKRVKRMSSDIAFIIDALQSSNTVEVQGDKIRKSNDWSKWIQVSSGNSGSS 399
           WVP   +AGFKRVK M+ D+ FI+ AL  SN+VEVQGD+IRK + WS W           
Sbjct: 310 WVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKWSDW----------- 358

Query: 400 TAQIQQSRLVKGADNSQNIDALGDKTMESSNEDHRDAAHNSVSMEHNQSNKDASQISHLK 459
                    +  +  S + + +GD   +S           S++   N  N          
Sbjct: 359 ---------IPASKKSTSAETIGDGDKDSPK---------SITSGDNFGNPSKGSSKPTV 400

Query: 460 REQDTESHHSNDVSHAVTGESVTFSSFDRTNNSCHSQETEPKIFDYDETENMDVLADME- 518
            +  +E   S+                 RTNN               ++ N+   AD + 
Sbjct: 401 SDFSSEGAQSS-----------------RTNNY--------------KSGNLKSSADEKR 429

Query: 519 -IGDHSNDFGNTFMLDEEIELEQKMLKKSEVSSPTRIDDEDDEMAVIEQDVQRLVIVTQN 577
            + D SNDF NTF+LDEE++LE +  +KS +S    I+ EDD+MAV +QD+Q+LVIVTQN
Sbjct: 430 NVEDLSNDFSNTFLLDEELDLEHRSPRKSGLSMSKSIEYEDDDMAVDDQDIQKLVIVTQN 489

Query: 578 GDPKQGSGDGGKESKSISNELASAINDGLYFYEQELKHRRSNRRKNN--CDNRGRNLKSP 635
                G+G GG E+K+I  ELAS INDGLY++EQELK +RS RRKNN   D +   +KS 
Sbjct: 490 SGKSDGAGIGGTEAKNIPKELASTINDGLYYFEQELKKKRSGRRKNNSHLDTKDGKIKSG 549

Query: 636 SQTSGVLNMKVGENTGGSSVPEEVGSNNSRRKQ-KVFPKQQSSIKQRFFSSNFRNHGTGR 694
                 LN K+GEN+  +   EE G   SRRKQ K   K  ++  +RFFSSN RN+G   
Sbjct: 550 EG----LNTKLGENSAANDGGEEHGIITSRRKQNKGTHKHHTAHARRFFSSNIRNNGNIS 605

Query: 695 NSHGVISESPPSNSVGFFFASTPPENHGLKPSIXXXXXXXXXXXXXXXXXXTPKSFPPFQ 754
            S         S+S+GFFF STPP++HG + S                    PKSFPPFQ
Sbjct: 606 ESPP-------SSSIGFFFGSTPPDSHGPRLSKLSSSPQCTLSGSSPPVGSLPKSFPPFQ 658

Query: 755 HPSHQLLEENGFKQQKYLKYQKRCLNERKKLGVGCSEEMNTLYRFWSYFLRDLFVPSMYN 814
           HPSHQLLEENGFKQ+KYLKY+KRCLNERKKLG GCSEEMN LYRFWSYFLRD FV SMY+
Sbjct: 659 HPSHQLLEENGFKQEKYLKYRKRCLNERKKLGSGCSEEMNHLYRFWSYFLRDTFVLSMYD 718

Query: 815 EFKKLAMEDAAANYHYGMECLFRFFSYGLEKEFRDDLYKDFEQLSLDFYHKGNLYGLEKY 874
           +F+K A+EDAA NY YG+ECLFRF+SYGLEK F +DLYKDFE+LSLDFYHKGNLYGLEKY
Sbjct: 719 DFQKFALEDAAGNYDYGLECLFRFYSYGLEKHFDEDLYKDFEKLSLDFYHKGNLYGLEKY 778

Query: 875 WAFHHYRKLRNQKEPLHKHPELEKLLREEYRSLEDFRAKE 914
           WAFHHY   R ++EP+ KHPELEKLL+EE+RS++DFRAKE
Sbjct: 779 WAFHHY---RGKEEPITKHPELEKLLKEEFRSIDDFRAKE 815


>AT4G35890.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr4:16997433-17000410 FORWARD
           LENGTH=523
          Length = 523

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 58/82 (70%)

Query: 308 LRTSIIKQIEYYFSDENLQNDRYLISLMDEQGWVPISTVAGFKRVKRMSSDIAFIIDALQ 367
           L   + KQI+YYFSDENL  D YL   M+ +G+VP+  VAGFK+V  ++ +I  I++ALQ
Sbjct: 369 LHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQ 428

Query: 368 SSNTVEVQGDKIRKSNDWSKWI 389
           +S  VEVQGD IRK ++W  W+
Sbjct: 429 NSPHVEVQGDFIRKRDNWQNWV 450


>AT5G66100.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr5:26427639-26429772 FORWARD
           LENGTH=453
          Length = 453

 Score = 89.7 bits (221), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 58/82 (70%)

Query: 308 LRTSIIKQIEYYFSDENLQNDRYLISLMDEQGWVPISTVAGFKRVKRMSSDIAFIIDALQ 367
           L   I+ Q+EYYFS +NL  D +L   M+++GWVP+  +A F+R+  ++++I  I++AL+
Sbjct: 335 LYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALR 394

Query: 368 SSNTVEVQGDKIRKSNDWSKWI 389
           SS  VE+QG+ +R+  DW K++
Sbjct: 395 SSEVVEIQGETLRRRGDWDKYL 416


>AT5G46250.1 | Symbols:  | RNA-binding protein |
           chr5:18755388-18758056 FORWARD LENGTH=422
          Length = 422

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 308 LRTSIIKQIEYYFSDENLQNDRYLISLM--DEQGWVPISTVAGFKRVKRMSSDIAFIIDA 365
           L   II+Q+EYYFSDENL  D++L++ M  +++G+VPIST+A F ++K+++ D A I+ A
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162

Query: 366 LQSSNTVEVQGDK 378
           L+ S+ + V  D+
Sbjct: 163 LKESSFLVVSADE 175


>AT5G46250.2 | Symbols:  | RNA-binding protein |
           chr5:18755388-18757723 FORWARD LENGTH=340
          Length = 340

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 308 LRTSIIKQIEYYFSDENLQNDRYLISLM--DEQGWVPISTVAGFKRVKRMSSDIAFIIDA 365
           L   II+Q+EYYFSDENL  D++L++ M  +++G+VPIST+A F ++K+++ D A I+ A
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162

Query: 366 LQSSNTVEVQGDK 378
           L+ S+ + V  D+
Sbjct: 163 LKESSFLVVSADE 175


>AT5G46250.3 | Symbols:  | RNA-binding protein |
           chr5:18755388-18757723 FORWARD LENGTH=340
          Length = 340

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 308 LRTSIIKQIEYYFSDENLQNDRYLISLM--DEQGWVPISTVAGFKRVKRMSSDIAFIIDA 365
           L   II+Q+EYYFSDENL  D++L++ M  +++G+VPIST+A F ++K+++ D A I+ A
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162

Query: 366 LQSSNTVEVQGDK 378
           L+ S+ + V  D+
Sbjct: 163 LKESSFLVVSADE 175


>AT2G43970.2 | Symbols:  | RNA-binding protein |
           chr2:18205535-18208031 REVERSE LENGTH=529
          Length = 529

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 4/74 (5%)

Query: 312 IIKQIEYYFSDENLQNDRYLISLM--DEQGWVPISTVAGFKRVKRMSSDIAFIIDALQSS 369
           I+ Q+EYYFSD NL    +L+  +  D +G+VPI  VA FK++K + ++ + +   LQ+S
Sbjct: 197 IVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNS 256

Query: 370 NTVEVQ--GDKIRK 381
             + V   G K+R+
Sbjct: 257 AKLFVSEDGKKVRR 270


>AT2G43970.1 | Symbols:  | RNA-binding protein |
           chr2:18205535-18208031 REVERSE LENGTH=545
          Length = 545

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 4/74 (5%)

Query: 312 IIKQIEYYFSDENLQNDRYLISLM--DEQGWVPISTVAGFKRVKRMSSDIAFIIDALQSS 369
           I+ Q+EYYFSD NL    +L+  +  D +G+VPI  VA FK++K + ++ + +   LQ+S
Sbjct: 197 IVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNS 256

Query: 370 NTVEVQ--GDKIRK 381
             + V   G K+R+
Sbjct: 257 AKLFVSEDGKKVRR 270