Miyakogusa Predicted Gene

Lj2g3v2972740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2972740.1 Non Chatacterized Hit- tr|B6T0J3|B6T0J3_MAIZE
Putative uncharacterized protein OS=Zea mays PE=4
SV=1,80.7,2e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.39556.1
         (223 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21070.1 | Symbols:  | unknown protein; Has 115 Blast hits to...   347   3e-96

>AT5G21070.1 | Symbols:  | unknown protein; Has 115 Blast hits to
           115 proteins in 34 species: Archae - 1; Bacteria - 36;
           Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other
           Eukaryotes - 18 (source: NCBI BLink). |
           chr5:7156356-7157490 FORWARD LENGTH=225
          Length = 225

 Score =  347 bits (891), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 175/188 (93%), Positives = 180/188 (95%)

Query: 1   MAGFTAEDLSTIGGIATVSILHSFIPTHWLPFSIVGRAQKWTLSRTLLVTALGAILHVIS 60
           M  FTAEDLSTIGGIATVS+LHSFIPTHWLPFSIVGRAQKWTLSRTLLVTA GA+LHVIS
Sbjct: 1   MDTFTAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLLVTAFGAVLHVIS 60

Query: 61  TSLLGITAINMANTIAGEETVHKLASLLLVFLGGSYVLLFFMGKGGHSHSHNQPMEKMAV 120
           TSLLGITAI MANTIAGEETVHKLASLLLVFLGGSYVLLF  GKGGH+HSHNQPMEKMAV
Sbjct: 61  TSLLGITAITMANTIAGEETVHKLASLLLVFLGGSYVLLFLAGKGGHTHSHNQPMEKMAV 120

Query: 121 AGLILVPALSPCATTLPVFLAVGSSSSMMVLAIIVLLFSTISVMTSLVALSFYGASQLKF 180
           AGL+LVPALSPCATTLPVFLAVG+S SMMVLAIIVLLFSTI VMTSLVALSFYGASQLKF
Sbjct: 121 AGLVLVPALSPCATTLPVFLAVGNSKSMMVLAIIVLLFSTILVMTSLVALSFYGASQLKF 180

Query: 181 HWVERYDK 188
           HWVERYDK
Sbjct: 181 HWVERYDK 188