Miyakogusa Predicted Gene

Lj2g3v2937480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2937480.1 tr|I1JIP3|I1JIP3_SOYBN KRR1 small subunit
processome component OS=Glycine max PE=3 SV=1,87.3,0,Eukaryotic type
KH-domain (KH-domain type I),NULL; no description,NULL; HIV-1 REV
BINDING PROTEIN 2,,CUFF.39531.1
         (376 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08420.1 | Symbols:  | RNA-binding KH domain-containing prote...   459   e-129

>AT5G08420.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr5:2713555-2716064 FORWARD LENGTH=391
          Length = 391

 Score =  459 bits (1182), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/340 (67%), Positives = 266/340 (78%), Gaps = 4/340 (1%)

Query: 36  NIDRWKVEKFDPSWNEGGMVEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGVSCELNLV 95
           NIDRW +EKFDP+WN  GM E S+FSTLFPQYREKYLQE WP V+S+LKE+GV+C+LNLV
Sbjct: 35  NIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQECWPRVESALKEYGVACKLNLV 94

Query: 96  EGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEVQCDIIKISGMVRNKE 155
           EGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKIL+DEVQCDIIKI  +VRNKE
Sbjct: 95  EGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILEDEVQCDIIKIGNLVRNKE 154

Query: 156 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSAMGSFKGLKQVRRIVEECMLNKLH 215
           RFVKRRQ LVGPNSSTLKALEILT CYILVQG+TV+AMG FKGLKQ+RRIVE+C+ N +H
Sbjct: 155 RFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGPFKGLKQLRRIVEDCVQNIMH 214

Query: 216 PVYNIKILMMKKELEKDPALAQENWDRFLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLS 275
           PVY+IK LMMKKELEKDPALA E+WDRFLP                             S
Sbjct: 215 PVYHIKTLMMKKELEKDPALANESWDRFLPTFRKKNVKQKKPKSKEKKPYTPFPPPQPPS 274

Query: 276 KEDEQLLTGEYFMSDKRKSAKKWQERQEKQAEKTAENKRKRDEAFIPPKEPAK---PLDK 332
           K D QL +GEYFMSDK+KS KKWQE+QEKQ+EK+ ENKRKRD +F+PP+EP       +K
Sbjct: 275 KIDMQLESGEYFMSDKKKSEKKWQEKQEKQSEKSTENKRKRDASFLPPEEPMNNNSNANK 334

Query: 333 SEDANDNVADMAMSLKK-KAKKFGERKSGENVDAEAYIMG 371
           SED  +++ ++  SLK    +   ++K+ E V+AE YI G
Sbjct: 335 SEDGKNDITELTNSLKSKTKELKKQKKTHERVNAEEYIAG 374