Miyakogusa Predicted Gene

Lj2g3v2926410.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2926410.2 Non Chatacterized Hit- tr|F6HTF0|F6HTF0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,63.16,8e-19,seg,NULL; coiled-coil,NULL; DUF2052,Protein of unknown
function DUF2052, coiled-coil,CUFF.39506.2
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47090.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   185   2e-47

>AT5G47090.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF2052,
           coiled-coil (InterPro:IPR018613); Has 30201 Blast hits
           to 17322 proteins in 780 species: Archae - 12; Bacteria
           - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:19127274-19128493 FORWARD LENGTH=310
          Length = 310

 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 119/210 (56%), Gaps = 37/210 (17%)

Query: 3   GRYFSEEAMREREPYLHHEYVGRFQDQSGRGMARPGERWSETLLRRCEEAELVAKIRGEQ 62
           G+YFSE+AMR+REPYLHHEYVG+FQD  GR MARPGERWSETL+RR EEA LV +IR EQ
Sbjct: 129 GQYFSEDAMRDREPYLHHEYVGKFQDVMGRNMARPGERWSETLMRRAEEAVLVTRIREEQ 188

Query: 63  QRMGVAERDWVGNEGF---------QQQXXXXXXXXXXXXXXXXXXXXXXXGERTSGGVT 113
           QR+GV+E DWVGNE           + +                        E+     T
Sbjct: 189 QRLGVSESDWVGNEKMEESEEEEEEESEEEEEEEDEEAKNPTEASSSSLNGKEQKEKATT 248

Query: 114 ALPVERDMNQPDVTDNAPXXXXXXXXXXXXXXXXXXDRMNQFAYIMQQKFLLGEDHEYLD 173
            LP E                               D M+QF  IM+QKFL GEDH++LD
Sbjct: 249 VLPPE----------------------------EMQDMMDQFTSIMEQKFLSGEDHQHLD 280

Query: 174 YAKIDNDETLDDHWQREANIDAEERYFADD 203
           YAKIDNDETLDDHW RE   DAE++YF +D
Sbjct: 281 YAKIDNDETLDDHWLREIGRDAEDKYFDED 310