Miyakogusa Predicted Gene

Lj2g3v2926320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2926320.1 tr|G7KHG4|G7KHG4_MEDTR 22.7 kDa class IV heat
shock protein OS=Medicago truncatula GN=MTR_5g087450
P,35,5e-18,HSP20,Alpha crystallin/Hsp20 domain; HSP20-like
chaperones,HSP20-like chaperone; seg,NULL; coiled-co,CUFF.39497.1
         (296 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27140.1 | Symbols:  | HSP20-like chaperones superfamily prot...    89   3e-18
AT5G20970.1 | Symbols:  | HSP20-like chaperones superfamily prot...    78   8e-15
AT5G04890.1 | Symbols: RTM2 | HSP20-like chaperones superfamily ...    48   7e-06

>AT2G27140.1 | Symbols:  | HSP20-like chaperones superfamily
          protein | chr2:11598496-11599264 REVERSE LENGTH=224
          Length = 224

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 2/88 (2%)

Query: 11 DRVYEDFEPYHESDRDEG--RFTVMLPGYRRDQLKVQVTSKPALKLMGERLIVGNRWRRF 68
          +R+Y++FEP      ++G    T+ LPG+R++QLKVQVT+   L++MG+R    N+W RF
Sbjct: 11 NRIYDEFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGANKWIRF 70

Query: 69 SLEFPIPSEYDTDDVTATFEGGRLSIKF 96
            EFPIP   D D V+A FEG  L ++ 
Sbjct: 71 RKEFPIPPNIDVDSVSAKFEGANLVVRL 98


>AT5G20970.1 | Symbols:  | HSP20-like chaperones superfamily
          protein | chr5:7123132-7124001 FORWARD LENGTH=249
          Length = 249

 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 11 DRVYEDFEPY--HESDRDEGRFTVMLPGYRRDQLKVQVTSKPALKLMGERLIVGNRWRRF 68
          +RVY++FEP     S+ D       LPG++++QLKV VT+   L+L GER   GN+W RF
Sbjct: 7  ERVYQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVSVTATRKLRLTGERPTGGNKWIRF 66

Query: 69 SLEFPIPSEYDTDDVTATFEGGRLSIKFGKL 99
            E P+P   D D V+A F+  +L I+  KL
Sbjct: 67 HQEIPVPLTVDIDSVSAMFKDNKLYIRHPKL 97


>AT5G04890.1 | Symbols: RTM2 | HSP20-like chaperones superfamily
          protein | chr5:1427217-1428390 FORWARD LENGTH=366
          Length = 366

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 14 YEDFEPYHESDRDEGRFTVM---LPGYRRDQLKV-QVTSKPALKLMGERLIVGNRWRRFS 69
          YEDF P  E  +D+   T++   L G+ ++Q+KV  V S   +++ GER +   +W RF+
Sbjct: 16 YEDFVPKSEW-KDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFN 74

Query: 70 LEFPIPSEYDTDDVTATFEGGRLSI 94
            F +P     D +  +F+   L+I
Sbjct: 75 EVFTVPQNCLVDKIHGSFKNNVLTI 99