Miyakogusa Predicted Gene

Lj2g3v2925140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2925140.1 tr|I0Z9P9|I0Z9P9_9CHLO AAA-domain-containing
protein OS=Coccomyxa subellipsoidea C-169 PE=3 SV=1,33.33,2e-17,Cdc48
domain 2-like,NULL; ADC-like,Aspartate decarboxylase-like fold;
PEX-1N,Peroxisome biogenesis
f,NODE_52501_length_501_cov_49.079842.path1.1
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08470.1 | Symbols: PEX1 | peroxisome 1 | chr5:2735925-274273...   149   8e-37

>AT5G08470.1 | Symbols: PEX1 | peroxisome 1 | chr5:2735925-2742731
           FORWARD LENGTH=1130
          Length = 1130

 Score =  149 bits (376), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/165 (54%), Positives = 115/165 (69%), Gaps = 12/165 (7%)

Query: 1   MELE--VHAVGGIDNCFVSLPLPLIQTLQSTRSSPLPHILALELRSLTHPPHSWFLAWSG 58
           ME E  V+ V G+D CFVSLP  L+  LQST SSPLP +L +ELRS       W +AWSG
Sbjct: 14  METEAVVNTVAGVD-CFVSLPRQLLHALQSTSSSPLPPLLPVELRS---GDRRWSVAWSG 69

Query: 59  ATXXXXXXXXXXAIEVSQQFAECVSLPNHAAVQVKVASNVPHASLVTIEPDTEDDWEILE 118
           ++          AIE+++ FAE +SLP+   V+V+V  NVP A+LVT+EP+TEDDWE+LE
Sbjct: 70  SSSSSS------AIEIARVFAESISLPDGTVVKVRVLPNVPKATLVTVEPETEDDWEVLE 123

Query: 119 LNSEQAEAAILNQIRIVHEGMRFPLWLNGHTVITFHVASVFPKNA 163
           LN+E AEAAIL+Q+RI+HE M+FPLWL+  TVI F V S FP   
Sbjct: 124 LNAELAEAAILSQVRILHETMKFPLWLHDRTVIRFSVVSTFPSKG 168