Miyakogusa Predicted Gene

Lj2g3v2925120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2925120.1 Non Chatacterized Hit- tr|I1KMB5|I1KMB5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.35863
PE,93.94,0,RNA-binding domain, RBD,NULL; DNA-DAMAGE REPAIR PROTEIN
DRT111,NULL; no
description,Nucleotide-bindi,
NODE_53912_length_841_cov_97.587395.path1.1
         (162 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30480.1 | Symbols: DRT111 | D111/G-patch domain-containing p...   215   1e-56

>AT1G30480.1 | Symbols: DRT111 | D111/G-patch domain-containing
           protein | chr1:10790315-10792423 FORWARD LENGTH=387
          Length = 387

 Score =  215 bits (547), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 118/167 (70%), Gaps = 6/167 (3%)

Query: 1   MMAXXXXXXXXXXXXXXXXITTPLMAKKTDRRAGVIVNASDNS------KKVKSVNFNGV 54
           MMA                ITTPLMAKKTDRRAGVIVNAS+N       K VKSVN NG 
Sbjct: 221 MMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGE 280

Query: 55  PTRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFE 114
           PTRVLLLRNM                 C KYGTVTRVLIFEITEPNFPV EAVRIFVQF 
Sbjct: 281 PTRVLLLRNMVGPGQVDDELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFS 340

Query: 115 RSEETTKALIDLDGRFFGGRVVRATFYDEDKFGKNELAPMPGEIPGF 161
           R EETTKAL+DLDGR+FGGR VRATFYDE+KF KNELAP+PGEIPG+
Sbjct: 341 RPEETTKALVDLDGRYFGGRTVRATFYDEEKFSKNELAPVPGEIPGY 387