Miyakogusa Predicted Gene
- Lj2g3v2905080.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2905080.2 Non Chatacterized Hit- tr|B9SUJ2|B9SUJ2_RICCO
Structural maintenance of chromosome, putative OS=Rici,92.78,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; no
description,NULL; seg,NULL; SMC_N,RecF,CUFF.39507.2
(268 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27170.2 | Symbols: TTN7, SMC3 | Structural maintenance of ch... 435 e-122
AT2G27170.1 | Symbols: TTN7, SMC3 | Structural maintenance of ch... 435 e-122
AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of chromo... 122 2e-28
AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural... 119 2e-27
AT5G48600.1 | Symbols: ATSMC3, ATCAP-C, ATSMC4, SMC3 | structura... 73 2e-13
AT5G48600.2 | Symbols: SMC3 | structural maintenance of chromoso... 73 3e-13
AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromoso... 55 6e-08
AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenan... 55 6e-08
>AT2G27170.2 | Symbols: TTN7, SMC3 | Structural maintenance of
chromosomes (SMC) family protein |
chr2:11609319-11617064 REVERSE LENGTH=1204
Length = 1204
Score = 435 bits (1119), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/268 (77%), Positives = 233/268 (86%)
Query: 1 MYIKQIVIEGFKSYREQIATETFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSED 60
M+IKQ++IEGFKSY+EQ+ATE FS KVNCVVGANGSGK+NFFHAIRFVLSD++QNLRSED
Sbjct: 1 MFIKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLRSED 60
Query: 61 RHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTE 120
RHALLHEGAGHQV+SAFVEIVFDNSDNR PVDKEE+RLRRT+GLKKD+YFLDGKHITK E
Sbjct: 61 RHALLHEGAGHQVVSAFVEIVFDNSDNRFPVDKEEIRLRRTVGLKKDDYFLDGKHITKGE 120
Query: 121 VMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQ 180
VMNLLESAGFSR+NPYYVVQQGKIASLTLMKD ERLDLLKEIGGTRVYEERRRESL+IMQ
Sbjct: 121 VMNLLESAGFSRANPYYVVQQGKIASLTLMKDIERLDLLKEIGGTRVYEERRRESLRIMQ 180
Query: 181 ETGNKRKQIIQVVQYXXXXXXXXXXXXXXXXXYQQLDKQRKSLEYAIYNKEVQDAQQKLI 240
ETGNKRKQII+VV Y YQQLDKQRKSLEY IY+KE+ DA++KL
Sbjct: 181 ETGNKRKQIIEVVHYLDERLRELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDAREKLE 240
Query: 241 EIEEARNKVSETSSKMYNDVLDAHEKSK 268
++E AR K SE S+KMY+ V A + SK
Sbjct: 241 QVEVARTKASEESTKMYDRVEKAQDDSK 268
>AT2G27170.1 | Symbols: TTN7, SMC3 | Structural maintenance of
chromosomes (SMC) family protein |
chr2:11609319-11617064 REVERSE LENGTH=1204
Length = 1204
Score = 435 bits (1119), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/268 (77%), Positives = 233/268 (86%)
Query: 1 MYIKQIVIEGFKSYREQIATETFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSED 60
M+IKQ++IEGFKSY+EQ+ATE FS KVNCVVGANGSGK+NFFHAIRFVLSD++QNLRSED
Sbjct: 1 MFIKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLRSED 60
Query: 61 RHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTE 120
RHALLHEGAGHQV+SAFVEIVFDNSDNR PVDKEE+RLRRT+GLKKD+YFLDGKHITK E
Sbjct: 61 RHALLHEGAGHQVVSAFVEIVFDNSDNRFPVDKEEIRLRRTVGLKKDDYFLDGKHITKGE 120
Query: 121 VMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQ 180
VMNLLESAGFSR+NPYYVVQQGKIASLTLMKD ERLDLLKEIGGTRVYEERRRESL+IMQ
Sbjct: 121 VMNLLESAGFSRANPYYVVQQGKIASLTLMKDIERLDLLKEIGGTRVYEERRRESLRIMQ 180
Query: 181 ETGNKRKQIIQVVQYXXXXXXXXXXXXXXXXXYQQLDKQRKSLEYAIYNKEVQDAQQKLI 240
ETGNKRKQII+VV Y YQQLDKQRKSLEY IY+KE+ DA++KL
Sbjct: 181 ETGNKRKQIIEVVHYLDERLRELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDAREKLE 240
Query: 241 EIEEARNKVSETSSKMYNDVLDAHEKSK 268
++E AR K SE S+KMY+ V A + SK
Sbjct: 241 QVEVARTKASEESTKMYDRVEKAQDDSK 268
>AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of
chromosomes (SMC) family protein |
chr3:17486765-17493178 FORWARD LENGTH=1171
Length = 1171
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 115/200 (57%), Gaps = 6/200 (3%)
Query: 1 MYIKQIVIEGFKSYREQIATETFSPKVNCVVGANGSGKTNFFHAIRFVLSDL-FQNLRSE 59
M+IK+I +EGFKSY + F P N + G NGSGK+N +I FVL Q +R+
Sbjct: 1 MHIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
Query: 60 DRHALLHEGAGHQVLSAFVEIVFDNSD-NRIPV---DKEEVRLRRTIGLK-KDEYFLDGK 114
+ L+++ + A V + FDNS+ NR P+ D E+ + R I + K++Y ++GK
Sbjct: 61 NLQELVYKQGQAGITRATVSVTFDNSERNRSPLGHEDHSEITVTRQIVVGGKNKYLINGK 120
Query: 115 HITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRE 174
+V NL S + +NP++++ QG+I + MK E L +L+E GTR+YE ++
Sbjct: 121 LAQPNQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPMEILSMLEEAAGTRMYENKKEA 180
Query: 175 SLKIMQETGNKRKQIIQVVQ 194
+LK +++ K +I ++++
Sbjct: 181 ALKTLEKKQTKVDEINKLLE 200
>AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural
maintenance of chromosomes 2 | chr5:25056308-25062436
FORWARD LENGTH=1175
Length = 1175
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 114/201 (56%), Gaps = 6/201 (2%)
Query: 1 MYIKQIVIEGFKSYREQIATETFSPKVNCVVGANGSGKTNFFHAIRFVLSDL-FQNLRSE 59
M+IK+I +EGFKSY + F P N + G NGSGK+N +I FVL Q +R+
Sbjct: 1 MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
Query: 60 DRHALLHEGAGHQVLSAFVEIVFDNSD-NRIPVDKEE----VRLRRTIGLKKDEYFLDGK 114
+ L+++ + A V + FDNS+ +R P+ EE R+ + +++Y ++GK
Sbjct: 61 NLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYLINGK 120
Query: 115 HITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRE 174
++V NL S + +NP++++ QG+I + MK E L +L+E GTR+YE ++
Sbjct: 121 LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYENKKEA 180
Query: 175 SLKIMQETGNKRKQIIQVVQY 195
+LK +++ K +I +++ +
Sbjct: 181 ALKTLEKKQTKVDEINKLLDH 201
>AT5G48600.1 | Symbols: ATSMC3, ATCAP-C, ATSMC4, SMC3 | structural
maintenance of chromosome 3 | chr5:19701908-19709091
FORWARD LENGTH=1241
Length = 1241
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 16/209 (7%)
Query: 1 MYIKQIVIEGFKSYREQIATETFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSED 60
+YIK++V+ FKSY + F + VVG NGSGK+N A+ FV + +R
Sbjct: 24 LYIKELVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNK 83
Query: 61 RHALLHEGAGHQVL-SAFVEIVFD---NSDNRI--PVDKEEVRLRRTIGLKKD--EYFLD 112
L+H HQ L SA V + F+ + +N + V + + R + + + +Y+++
Sbjct: 84 VSELIHNSTNHQNLDSAGVSVQFEEIIDLENGLYETVPGSDFMITR-VAFRDNSSKYYIN 142
Query: 113 GKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMK-------DSERLDLLKEIGGT 165
+ TEV L+ G N +++ QG++ ++LMK D L+ L++I GT
Sbjct: 143 ERSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGT 202
Query: 166 RVYEERRRESLKIMQETGNKRKQIIQVVQ 194
Y E+ E K ++ R ++Q+V+
Sbjct: 203 NKYVEKIDELNKQLETLNESRSGVVQMVK 231
>AT5G48600.2 | Symbols: SMC3 | structural maintenance of chromosome
3 | chr5:19701908-19709091 FORWARD LENGTH=1244
Length = 1244
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 16/209 (7%)
Query: 1 MYIKQIVIEGFKSYREQIATETFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSED 60
+YIK++V+ FKSY + F + VVG NGSGK+N A+ FV + +R
Sbjct: 24 LYIKELVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNK 83
Query: 61 RHALLHEGAGHQVL-SAFVEIVFD---NSDNRI--PVDKEEVRLRRTIGLKKD--EYFLD 112
L+H HQ L SA V + F+ + +N + V + + R + + + +Y+++
Sbjct: 84 VSELIHNSTNHQNLDSAGVSVQFEEIIDLENGLYETVPGSDFMITR-VAFRDNSSKYYIN 142
Query: 113 GKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMK-------DSERLDLLKEIGGT 165
+ TEV L+ G N +++ QG++ ++LMK D L+ L++I GT
Sbjct: 143 ERSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGT 202
Query: 166 RVYEERRRESLKIMQETGNKRKQIIQVVQ 194
Y E+ E K ++ R ++Q+V+
Sbjct: 203 NKYVEKIDELNKQLETLNESRSGVVQMVK 231
>AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromosomes
(SMC) family protein | chr3:20235818-20243701 FORWARD
LENGTH=1239
Length = 1239
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 18/171 (10%)
Query: 3 IKQIVIEGFKSYREQIATETFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSEDRH 62
I Q+ +E FKSY+ F ++G NGSGK+N AI FVL LR
Sbjct: 11 ILQLEMENFKSYKGHQLVGPFKD-FTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLK 69
Query: 63 ALLH-------EGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTI-GLKKDEYFLDGK 114
L++ E G + AFV +V+ D E+R R+I EY +D +
Sbjct: 70 DLIYAFDDRDKEQRGRK---AFVRLVYQMDDGV------ELRFTRSITSAGGSEYRIDNR 120
Query: 115 HITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGT 165
+ E L S G ++V QG + S+ E LL+EI G+
Sbjct: 121 VVNLDEYNGKLRSLGILVKARNFLVFQGDVESIASKNPKELTGLLEEISGS 171
>AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance
of chromosomes (SMC) family protein |
chr3:20235818-20243701 FORWARD LENGTH=1238
Length = 1238
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 18/171 (10%)
Query: 3 IKQIVIEGFKSYREQIATETFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSEDRH 62
I Q+ +E FKSY+ F ++G NGSGK+N AI FVL LR
Sbjct: 11 ILQLEMENFKSYKGHQLVGPFKD-FTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLK 69
Query: 63 ALLH-------EGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTI-GLKKDEYFLDGK 114
L++ E G + AFV +V+ D E+R R+I EY +D +
Sbjct: 70 DLIYAFDDRDKEQRGRK---AFVRLVYQMDDGV------ELRFTRSITSAGGSEYRIDNR 120
Query: 115 HITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGT 165
+ E L S G ++V QG + S+ E LL+EI G+
Sbjct: 121 VVNLDEYNGKLRSLGILVKARNFLVFQGDVESIASKNPKELTGLLEEISGS 171