Miyakogusa Predicted Gene

Lj2g3v2905060.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2905060.1 tr|Q0IS21|Q0IS21_ORYSJ Os11g0573200 protein
(Fragment) OS=Oryza sativa subsp. japonica
GN=Os11g05732,43.75,0.00000000000001,zinc finger,Zinc finger,
CCHC-type; Retrovirus zinc finger-like domains,Zinc finger, CCHC-type;
zf-C,CUFF.39487.1
         (326 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G43590.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...   128   5e-30
AT3G43490.1 | Symbols:  | Zinc knuckle (CCHC-type) family protei...    79   4e-15

>AT3G43590.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr3:15509753-15512255 FORWARD LENGTH=551
          Length = 551

 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 77/120 (64%), Gaps = 4/120 (3%)

Query: 186 EAGTVQMSDNVVLRKLLRGPRYYDPPADCGWETCYNCGEEGHATVKCAAAKELKKPCYLC 245
           E  T + + N+VL+KLLRG RY+DPP D GW +CY+CGE+GH +  C    + +KPC++C
Sbjct: 136 EPKTEETASNLVLKKLLRGARYFDPP-DAGWVSCYSCGEQGHTSFNCPTPTKRRKPCFIC 194

Query: 246 GSLMHQAKRCKKERDCIICRKVGHPVKNCRRTHMGDS---ICLRCRISGHDMFSCGNFYS 302
           GSL H AK+C K  DC IC+K GH  K+C   +   S   +CLRC   GHDM  C   YS
Sbjct: 195 GSLEHGAKQCSKGHDCYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYS 254


>AT3G43490.1 | Symbols:  | Zinc knuckle (CCHC-type) family protein |
           chr3:15398859-15400079 FORWARD LENGTH=260
          Length = 260

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 191 QMSDNVVLRKLLRGPRYYDPPADCGWETCYNCGEEGHATVKCAAAKELKKPCYLCGSLMH 250
           + + N V+ KLLRG RY+DP  D GW TCY+CGE+ H TV C      +K C++C SL H
Sbjct: 118 ETTSNSVMTKLLRGARYFDP-LDAGWVTCYSCGEKDHITVSCPTLTNCRKSCFICASLEH 176

Query: 251 QAKRCKKERD 260
            A++C K  D
Sbjct: 177 GARQCTKVWD 186