Miyakogusa Predicted Gene

Lj2g3v2904930.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2904930.1 tr|A9T1C3|A9T1C3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_190638,53.93,7e-18,Ribosomal_L30,Ribosomal protein L30,
ferredoxin-like fold domain;
Ribosomal_L30_ferredoxin-like,Ribo,CUFF.39492.1
         (107 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55140.1 | Symbols:  | ribosomal protein L30 family protein |...   145   8e-36

>AT5G55140.1 | Symbols:  | ribosomal protein L30 family protein |
           chr5:22381370-22381787 FORWARD LENGTH=109
          Length = 109

 Score =  145 bits (365), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 87/106 (82%), Gaps = 1/106 (0%)

Query: 1   MNAFKAYKACVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60
           M+ F+A+KA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ L +C+RTV+  N  ++RG
Sbjct: 1   MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRG 60

Query: 61  MLQQVKRLVVIETEEMYKARKQKEEAHRALRPPLVINHQPSSATGT 106
           M+ QVKR+VV+ETEEMY ARK+ E  H+ALRPPLV++H  S AT +
Sbjct: 61  MIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSHS-SPATDS 105