Miyakogusa Predicted Gene
- Lj2g3v2904810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2904810.1 tr|B0BLB9|B0BLB9_LOTJA CM0545.430.nc protein
OS=Lotus japonicus GN=CM0545.430.nc PE=4
SV=1,100,0,PTHR12555,Ubiquitin fusion degradation protein UFD1;
PTHR12555:SF10,NULL; UFD1,Ubiquitin fusion degr,CUFF.39468.1
(570 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15420.1 | Symbols: | Ubiquitin fusion degradation UFD1 fami... 758 0.0
AT2G29070.2 | Symbols: | Ubiquitin fusion degradation UFD1 fami... 120 2e-27
AT2G21270.3 | Symbols: UFD1 | ubiquitin fusion degradation 1 | c... 114 1e-25
AT2G21270.2 | Symbols: UFD1 | ubiquitin fusion degradation 1 | c... 114 2e-25
AT2G21270.1 | Symbols: UFD1 | ubiquitin fusion degradation 1 | c... 114 2e-25
AT2G29070.1 | Symbols: | Ubiquitin fusion degradation UFD1 fami... 113 3e-25
AT4G38930.2 | Symbols: | Ubiquitin fusion degradation UFD1 fami... 112 1e-24
AT4G38930.1 | Symbols: | Ubiquitin fusion degradation UFD1 fami... 111 1e-24
AT1G09920.1 | Symbols: | TRAF-type zinc finger-related | chr1:3... 61 2e-09
>AT4G15420.1 | Symbols: | Ubiquitin fusion degradation UFD1 family
protein | chr4:8823822-8825949 FORWARD LENGTH=561
Length = 561
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/545 (64%), Positives = 448/545 (82%), Gaps = 14/545 (2%)
Query: 28 QKERKAKEDARKQREAIEAAQRSRRIDAAEAQLKAEQQMQESLIAGRGIVFYRLLEAVPF 87
++E+K+KE A KQREAIEAAQR+RR+DA EAQ+KA+Q MQESL++G GIVF R+ +AV F
Sbjct: 28 EREKKSKEAAIKQREAIEAAQRARRLDAIEAQIKADQHMQESLVSGDGIVFERVFQAVSF 87
Query: 88 QGSGDKIKLPPSCFTDLSDNGALDKGPMYFQLSLVHVEGTSGIEGADKEKQGTTHSGVLE 147
QG+GDKIKLPPSCFT+LSD GA DKGP+YF+LS+V + AD +K TTHSGVLE
Sbjct: 88 QGNGDKIKLPPSCFTELSDQGAFDKGPLYFELSVV--------DHADNKK--TTHSGVLE 137
Query: 148 FTADEGSVGLPPHVWNNLFS-EVSVNSPLVEVRYVWLPKGTYAKLQPERAGFSDLPNHKA 206
FTA++G++GLPPHVW+NLFS ++ PLVE+RY+ LPKG+YAKLQP+ GFSDLPNHKA
Sbjct: 138 FTAEDGTIGLPPHVWSNLFSTHDPMDVPLVEIRYIRLPKGSYAKLQPDNLGFSDLPNHKA 197
Query: 207 ILETSLRQHATLSQGDILTVNYGELAYKLRVLELKPSTSVSVLETDIEVDIVDSDTSLEK 266
ILET LRQHATLS D+L VNYG+++YKL+VLEL+P+TS+SVLETDIEVDIV D ++
Sbjct: 198 ILETILRQHATLSLDDVLLVNYGQVSYKLQVLELRPATSISVLETDIEVDIVSPDIVSDQ 257
Query: 267 TDQHVLIPIVFGMPQIGTVEEGKFVYYKFSIDNGTWEKISTGSSSIELKLESETDGGDTD 326
+QHVL P+ +G + GTVEEG++ YYKF ID T EK+ GS + +K++ E G DTD
Sbjct: 258 PNQHVLKPLQYGKSESGTVEEGRYDYYKFVIDEATVEKVMAGSVKVIVKVDVEKVGADTD 317
Query: 327 LFISRHPLIFPTRHQHEWSSHDIGSKTLILSSKDKNLSAETYSVGIFGFRGIAKYKLSVM 386
L++S+HP++FP+ +QHEWSSHD+GSKTLIL SK++ LS+ TYS+G++GF+G KY++SV+
Sbjct: 318 LYVSKHPVLFPSLNQHEWSSHDVGSKTLILVSKERALSSGTYSIGVYGFKGTVKYQVSVL 377
Query: 387 IQDNLD-QKLGQQXXXXXXXXXXXXXKCRNCKHYIPTRTIALHEAYCVRHNIVCQHVGCG 445
+Q+++D K+G++ +CRNCKH IP+R+IALHE YC RHN+VC H GCG
Sbjct: 378 VQESIDGAKVGER--AVSSSSDVDTVECRNCKHSIPSRSIALHEVYCSRHNVVCNHHGCG 435
Query: 446 VVLRIEESKNHVHCDRCGQAFQQVELEKHMKVFHEPLRCPCGIILEKEQMVEHQASVCPL 505
+VLR+EE+KNH+HC++CG+A Q E+EKH+KVFHEPL C CGI+LEKEQMV+HQ CPL
Sbjct: 436 IVLRVEEAKNHLHCEKCGKALQPTEMEKHLKVFHEPLTCGCGIVLEKEQMVQHQGKDCPL 495
Query: 506 RLISCRFCGDMVQAGSSAMEIRDRMRGLSEHESVCGSRTAPCDSCGRSVMLKDMDIHQVA 565
RLI+CRFCGDMV+AG+SA + RDRMRG+SEHES CGSRTAPCDSCGRSVMLKDMDIHQ+A
Sbjct: 496 RLIACRFCGDMVEAGNSAADTRDRMRGMSEHESTCGSRTAPCDSCGRSVMLKDMDIHQIA 555
Query: 566 VHQKS 570
VH KS
Sbjct: 556 VHGKS 560
>AT2G29070.2 | Symbols: | Ubiquitin fusion degradation UFD1 family
protein | chr2:12487797-12489335 FORWARD LENGTH=312
Length = 312
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 97/168 (57%), Gaps = 18/168 (10%)
Query: 91 GDKIKLPPSCFTDLSDNGALDKGPMYFQLSLVHVEGTSGIEGADKEKQGTTHSGVLEFTA 150
GDKI +PPS L+ + PM FQLS V VE TS H GVLEFTA
Sbjct: 28 GDKIIMPPSALDRLASLHI--EYPMLFQLSNVSVEKTS-------------HCGVLEFTA 72
Query: 151 DEGSVGLPPHVWNNLFSEVSVNSPLVEVRYVWLPKGTYAKLQPERAGFSDLPNHKAILET 210
DEG V LP + N+ E +++V+ + L KGTY KLQP F D+ N KAILET
Sbjct: 73 DEGLVYLPYWMMQNMSLE---EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILET 129
Query: 211 SLRQHATLSQGDILTVNYGELAYKLRVLELKPSTSVSVLETDIEVDIV 258
+LR ++ L+ GD + V Y Y + V+E KPS++VS++ETD EVD
Sbjct: 130 TLRSYSCLTTGDTIMVPYNNKQYYINVVEAKPSSAVSIIETDCEVDFA 177
>AT2G21270.3 | Symbols: UFD1 | ubiquitin fusion degradation 1 |
chr2:9107841-9110012 FORWARD LENGTH=340
Length = 340
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 96/169 (56%), Gaps = 18/169 (10%)
Query: 90 SGDKIKLPPSCFTDLSDNGALDKGPMYFQLSLVHVEGTSGIEGADKEKQGTTHSGVLEFT 149
SGDKI +PPS ALD+ L+ +H++ E + + TH GVLEF
Sbjct: 53 SGDKIIMPPS---------ALDR------LASLHIDYPMLFELRNAGIERVTHCGVLEFI 97
Query: 150 ADEGSVGLPPHVWNNLFSEVSVNSPLVEVRYVWLPKGTYAKLQPERAGFSDLPNHKAILE 209
A+EG + +P + NL + +V VR V LPKGTY KLQP F D+ N KAILE
Sbjct: 98 AEEGMIYMPYWMMQNLLLQ---EGDIVRVRNVTLPKGTYVKLQPHTTDFLDISNPKAILE 154
Query: 210 TSLRQHATLSQGDILTVNYGELAYKLRVLELKPSTSVSVLETDIEVDIV 258
T+LR ++ L+ GD + V Y Y + ++E KP+ ++S++ETD EVD
Sbjct: 155 TALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVDFA 203
>AT2G21270.2 | Symbols: UFD1 | ubiquitin fusion degradation 1 |
chr2:9108126-9110012 FORWARD LENGTH=319
Length = 319
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 97/169 (57%), Gaps = 18/169 (10%)
Query: 90 SGDKIKLPPSCFTDLSDNGALDKGPMYFQLSLVHVEGTSGIEGADKEKQGTTHSGVLEFT 149
SGDKI +PPS L+ + +D PM F+L +GIE TH GVLEF
Sbjct: 32 SGDKIIMPPSALDRLA-SLHIDY-PMLFELR------NAGIER-------VTHCGVLEFI 76
Query: 150 ADEGSVGLPPHVWNNLFSEVSVNSPLVEVRYVWLPKGTYAKLQPERAGFSDLPNHKAILE 209
A+EG + +P + NL + +V VR V LPKGTY KLQP F D+ N KAILE
Sbjct: 77 AEEGMIYMPYWMMQNLLLQ---EGDIVRVRNVTLPKGTYVKLQPHTTDFLDISNPKAILE 133
Query: 210 TSLRQHATLSQGDILTVNYGELAYKLRVLELKPSTSVSVLETDIEVDIV 258
T+LR ++ L+ GD + V Y Y + ++E KP+ ++S++ETD EVD
Sbjct: 134 TALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVDFA 182
>AT2G21270.1 | Symbols: UFD1 | ubiquitin fusion degradation 1 |
chr2:9108126-9110012 FORWARD LENGTH=319
Length = 319
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 97/169 (57%), Gaps = 18/169 (10%)
Query: 90 SGDKIKLPPSCFTDLSDNGALDKGPMYFQLSLVHVEGTSGIEGADKEKQGTTHSGVLEFT 149
SGDKI +PPS L+ + +D PM F+L +GIE TH GVLEF
Sbjct: 32 SGDKIIMPPSALDRLA-SLHIDY-PMLFELR------NAGIER-------VTHCGVLEFI 76
Query: 150 ADEGSVGLPPHVWNNLFSEVSVNSPLVEVRYVWLPKGTYAKLQPERAGFSDLPNHKAILE 209
A+EG + +P + NL + +V VR V LPKGTY KLQP F D+ N KAILE
Sbjct: 77 AEEGMIYMPYWMMQNLLLQ---EGDIVRVRNVTLPKGTYVKLQPHTTDFLDISNPKAILE 133
Query: 210 TSLRQHATLSQGDILTVNYGELAYKLRVLELKPSTSVSVLETDIEVDIV 258
T+LR ++ L+ GD + V Y Y + ++E KP+ ++S++ETD EVD
Sbjct: 134 TALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVDFA 182
>AT2G29070.1 | Symbols: | Ubiquitin fusion degradation UFD1 family
protein | chr2:12488061-12489335 FORWARD LENGTH=280
Length = 280
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 86/145 (59%), Gaps = 16/145 (11%)
Query: 114 PMYFQLSLVHVEGTSGIEGADKEKQGTTHSGVLEFTADEGSVGLPPHVWNNLFSEVSVNS 173
PM FQLS V VE TS H GVLEFTADEG V LP + N+ E
Sbjct: 17 PMLFQLSNVSVEKTS-------------HCGVLEFTADEGLVYLPYWMMQNMSLE---EG 60
Query: 174 PLVEVRYVWLPKGTYAKLQPERAGFSDLPNHKAILETSLRQHATLSQGDILTVNYGELAY 233
+++V+ + L KGTY KLQP F D+ N KAILET+LR ++ L+ GD + V Y Y
Sbjct: 61 DVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDTIMVPYNNKQY 120
Query: 234 KLRVLELKPSTSVSVLETDIEVDIV 258
+ V+E KPS++VS++ETD EVD
Sbjct: 121 YINVVEAKPSSAVSIIETDCEVDFA 145
>AT4G38930.2 | Symbols: | Ubiquitin fusion degradation UFD1 family
protein | chr4:18149907-18151616 FORWARD LENGTH=315
Length = 315
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 93/169 (55%), Gaps = 18/169 (10%)
Query: 90 SGDKIKLPPSCFTDLSDNGALDKGPMYFQLSLVHVEGTSGIEGADKEKQGTTHSGVLEFT 149
SGDKI +PPS L+ + +D PM F+L + S H GVLEF
Sbjct: 32 SGDKIIMPPSALDRLA-SLQIDY-PMLFELRNASTDSFS-------------HCGVLEFI 76
Query: 150 ADEGSVGLPPHVWNNLFSEVSVNSPLVEVRYVWLPKGTYAKLQPERAGFSDLPNHKAILE 209
A+EG + +P + NL + +V VR V LPKGTY KLQP F D+ N KAILE
Sbjct: 77 AEEGVIYIPYWMMQNLLLQ---EGDMVRVRNVTLPKGTYVKLQPHTTDFLDIANPKAILE 133
Query: 210 TSLRQHATLSQGDILTVNYGELAYKLRVLELKPSTSVSVLETDIEVDIV 258
T+LR ++ L+ GD + V Y Y + ++E KPS +S++ETD EVD
Sbjct: 134 TALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVDFA 182
>AT4G38930.1 | Symbols: | Ubiquitin fusion degradation UFD1 family
protein | chr4:18149907-18151616 FORWARD LENGTH=311
Length = 311
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 93/169 (55%), Gaps = 18/169 (10%)
Query: 90 SGDKIKLPPSCFTDLSDNGALDKGPMYFQLSLVHVEGTSGIEGADKEKQGTTHSGVLEFT 149
SGDKI +PPS L+ + +D PM F+L + S H GVLEF
Sbjct: 32 SGDKIIMPPSALDRLA-SLQIDY-PMLFELRNASTDSFS-------------HCGVLEFI 76
Query: 150 ADEGSVGLPPHVWNNLFSEVSVNSPLVEVRYVWLPKGTYAKLQPERAGFSDLPNHKAILE 209
A+EG + +P + NL + +V VR V LPKGTY KLQP F D+ N KAILE
Sbjct: 77 AEEGVIYIPYWMMQNLLLQ---EGDMVRVRNVTLPKGTYVKLQPHTTDFLDIANPKAILE 133
Query: 210 TSLRQHATLSQGDILTVNYGELAYKLRVLELKPSTSVSVLETDIEVDIV 258
T+LR ++ L+ GD + V Y Y + ++E KPS +S++ETD EVD
Sbjct: 134 TALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVDFA 182
>AT1G09920.1 | Symbols: | TRAF-type zinc finger-related |
chr1:3224863-3226860 REVERSE LENGTH=192
Length = 192
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 32/153 (20%)
Query: 413 CRNCKHYIPTRTIALHEAYCVRHNIVCQHVGCGVVLRIEESKNHVHCDRCGQAFQQVELE 472
C +C IP+ I LH +C R N C CG + E
Sbjct: 12 CNHCDRDIPSLNIDLHRVHCAR--------------------NLEKCKICGDMVPKKHAE 51
Query: 473 KHMKVFHEPLRCP-CGIILEKEQMVEHQASVCPLRLISCRFCGDMVQAGSSAMEIRDRMR 531
+H H P+ C C +E+E H+ +CP R+++C FC + A
Sbjct: 52 EHYLNTHAPIACSMCKETIEREIFDSHKGEICPKRIVTCEFCEFPLPAVD---------- 101
Query: 532 GLSEHESVCGSRTAPCDSCGRSVMLKDMDIHQV 564
L+EH+ VCG+RT C C V L++ H+
Sbjct: 102 -LAEHQEVCGNRTELCYQCNSYVRLRERYNHET 133