Miyakogusa Predicted Gene

Lj2g3v2902520.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2902520.2 tr|G7JAE3|G7JAE3_MEDTR Neurochondrin OS=Medicago
truncatula GN=MTR_3g106410 PE=4 SV=1,74.51,0.0000000000003,
,CUFF.39488.2
         (100 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32050.1 | Symbols:  | neurochondrin family protein | chr4:15...    46   5e-06

>AT4G32050.1 | Symbols:  | neurochondrin family protein |
           chr4:15496620-15500717 FORWARD LENGTH=618
          Length = 618

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 51/80 (63%), Gaps = 6/80 (7%)

Query: 11  SKGIKILASQMSSVQDGSHLVEISVKLLQLILRRISLDTIQNNYLAELSV----ISQLRD 66
           S G++++A QMS + DGSH +E+++K+LQL++ ++   ++      ELS+    +++   
Sbjct: 146 SGGLRVIAPQMSELPDGSHAMEVAIKILQLLVSKLDCGSMTIERFLELSLVIAAVARQFA 205

Query: 67  TLHLAVRWCSLMLRLLESVF 86
            LH A+++ +  L LL +VF
Sbjct: 206 VLHNALKFEA--LHLLSAVF 223