Miyakogusa Predicted Gene

Lj2g3v2902390.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2902390.1 Non Chatacterized Hit- tr|J3MDU3|J3MDU3_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB06G2,34.78,1e-16,SUBFAMILY NOT NAMED,NULL; C1ORF73 PROTEIN,NULL;
ARM repeat,Armadillo-type fold,CUFF.39426.1
         (355 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20060.1 | Symbols: EMB1895 | ARM repeat superfamily protein ...   300   1e-81

>AT4G20060.1 | Symbols: EMB1895 | ARM repeat superfamily protein |
           chr4:10854790-10859330 REVERSE LENGTH=1134
          Length = 1134

 Score =  300 bits (768), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/309 (50%), Positives = 211/309 (68%), Gaps = 1/309 (0%)

Query: 1   MEPTCAACAMEWSIQLEKGLRSSKPGVPVKTILKLGPHLQLWSREFESGIDSNAIFGLVP 60
           ME   AACAMEWSI+LEK LRS      V+ IL+ G  L+ WS+E ES I    +FGLVP
Sbjct: 1   MEKVSAACAMEWSIKLEKSLRSKNSVKAVEAILETGGKLEQWSKEPESAIAVYNLFGLVP 60

Query: 61  GEDRLFANAILLRLADAFRGGDKEIRLSIVRVFLFERK-HRDNGKHKQCKGLLSKARVAN 119
            ED+LF+N ILLRL DAF  GDK I+L++VRVF+   K  R    ++     LSK RV N
Sbjct: 61  EEDKLFSNTILLRLVDAFCVGDKLIKLAVVRVFMSMFKLSRGKNVNESASWFLSKGRVHN 120

Query: 120 HLEMLKRVKSVFQNGDSECKALALVLFGCWADFANDNAQIRYLILSSLVSTHDCEVIASL 179
           HLE+L RVK+V+  GD+E KALAL+LFGCW DFA++ A +RYL+ SS+VS HD E  ++L
Sbjct: 121 HLELLTRVKNVYDKGDTESKALALILFGCWRDFASEFAPVRYLVFSSMVSPHDLEGRSAL 180

Query: 180 FAAGCFCEISDDFACITLEMLFNMVNTPAVSLPIKLAAVRVFAKFKCSDSVASKAYKIGL 239
           FAA CFCE++DDFA + L ML +MV  P ++   +LAAVRVFAK  CS ++A++A+KI +
Sbjct: 181 FAAACFCEVADDFALVVLGMLNDMVKFPDITPKTRLAAVRVFAKMGCSHTIANRAFKICM 240

Query: 240 QLILNSSNEDLLVAMLFSLSKLASVSTVLASNEVDFLLSFVKREVASHVQETASKCIHYL 299
           +L+L+S  ED LV  L SL+KLAS ST LAS   + ++ F+  +  SH +    +C+H+L
Sbjct: 241 KLMLDSPKEDNLVPFLVSLTKLASRSTHLASELAEVIIPFLGEDKTSHARAAVLRCLHFL 300

Query: 300 LKNNPALKL 308
           ++      L
Sbjct: 301 IERGMCFSL 309