Miyakogusa Predicted Gene

Lj2g3v2901270.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2901270.3 Non Chatacterized Hit- tr|C6TFA8|C6TFA8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38214
PE,51.69,0.00000000000004,seg,NULL; E1_DerP2_DerF2,MD-2-related
lipid-recognition; no description,NULL; E set
domains,Immunogl,CUFF.39464.3
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11780.2 | Symbols:  | MD-2-related lipid recognition domain-...    68   1e-12
AT3G11780.1 | Symbols:  | MD-2-related lipid recognition domain-...    68   2e-12
AT5G06480.1 | Symbols:  | Immunoglobulin E-set superfamily prote...    62   1e-10
AT3G44100.1 | Symbols:  | MD-2-related lipid recognition domain-...    59   5e-10

>AT3G11780.2 | Symbols:  | MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           | chr3:3724326-3725476 REVERSE LENGTH=171
          Length = 171

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 42/67 (62%), Gaps = 2/67 (2%)

Query: 42  YCDKNADYAVKVSGVEILPDPVVRGVPFTFKIAAYTGEPIPSGDLLYEISYAGIEGEPAT 101
           YCD N +Y VKV GV+I P P+ RG P TF+I+A T   I SG L+ E+SY G      T
Sbjct: 29  YCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTEISSGKLVIEVSYFGWHIHSET 88

Query: 102 FLHDLCE 108
             HDLC+
Sbjct: 89  --HDLCD 93


>AT3G11780.1 | Symbols:  | MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           | chr3:3724326-3725476 REVERSE LENGTH=153
          Length = 153

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 42/67 (62%), Gaps = 2/67 (2%)

Query: 42  YCDKNADYAVKVSGVEILPDPVVRGVPFTFKIAAYTGEPIPSGDLLYEISYAGIEGEPAT 101
           YCD N +Y VKV GV+I P P+ RG P TF+I+A T   I SG L+ E+SY G      T
Sbjct: 29  YCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTEISSGKLVIEVSYFGWHIHSET 88

Query: 102 FLHDLCE 108
             HDLC+
Sbjct: 89  --HDLCD 93


>AT5G06480.1 | Symbols:  | Immunoglobulin E-set superfamily protein
           | chr5:1976219-1977231 REVERSE LENGTH=153
          Length = 153

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 42  YCDKNADYAVKVSGVEILPDPVVRGVPFTFKIAAYTGEPIPSGDLLYEISYAGIEGEPAT 101
           YC++NA+Y VKV  V+I P+P+  G P TF I+A TG  I  G L+ E+SY G      T
Sbjct: 29  YCEENAEYEVKVKEVDISPNPIAPGEPATFTISANTGREISFGKLVIEVSYFGWHVHSET 88

Query: 102 FLHDLC 107
             HDLC
Sbjct: 89  --HDLC 92


>AT3G44100.1 | Symbols:  | MD-2-related lipid recognition
           domain-containing protein | chr3:15866162-15867273
           REVERSE LENGTH=152
          Length = 152

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 42  YCDKNADYAVKVSGVEILPDPVVRGVPFTFKIAAYTGEPIPSGDLLYEISYAGIEGEPAT 101
           YCDK  D  VKV+GV+I PDPVV G   TFKI   TGE I  G ++  + Y GI     T
Sbjct: 29  YCDKRLD-PVKVTGVKISPDPVVSGAAATFKIFGSTGEDISGGKVVIRVLYVGIPVHTET 87

Query: 102 FLHDLCE 108
             HDLC+
Sbjct: 88  --HDLCD 92