Miyakogusa Predicted Gene

Lj2g3v2843030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2843030.1 tr|Q5BN91|Q5BN91_ACEAT Sorting nexin 1
OS=Acetabularia acetabulum PE=2 SV=1,24.29,5e-18,seg,NULL;
coiled-coil,NULL; PhoX homologous domain, present in p47phox a,Phox
homologous domain; no ,CUFF.39320.1
         (423 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07120.1 | Symbols: SNX2b | sorting nexin 2B | chr5:2207065-2...   442   e-124
AT5G58440.1 | Symbols: SNX2a | sorting nexin 2A | chr5:23624154-...   389   e-108
AT5G06140.1 | Symbols: SNX1, ATSNX1 | sorting nexin 1 | chr5:185...    91   2e-18

>AT5G07120.1 | Symbols: SNX2b | sorting nexin 2B |
           chr5:2207065-2209355 REVERSE LENGTH=572
          Length = 572

 Score =  442 bits (1136), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/434 (54%), Positives = 298/434 (68%), Gaps = 71/434 (16%)

Query: 59  YLHISVSDPQEEQDLTNSLV-GGNTFQTYLITTRTNVPELGGPGSEYSVRRRFREVVTLS 117
           Y+ I+VS+PQ+EQ+ TNS++ GG+T+ TY ITTRTN+ + GG  SE+SVRRRFR++VTL+
Sbjct: 141 YIKITVSNPQKEQEATNSMIPGGSTYITYQITTRTNLSDYGG--SEFSVRRRFRDIVTLA 198

Query: 118 ERLSEAYRGYVIPVRPEKSTVERQVMQKGEFVEQRRVALEKYLRKL-------------- 163
           +RL+E+YRG+ IP RP+KS VE QVMQK EFVEQRRVALEKYLR+L              
Sbjct: 199 DRLAESYRGFCIPPRPDKSIVESQVMQKQEFVEQRRVALEKYLRRLVAHPVIRNSDELKV 258

Query: 164 ----------------------GIFKELKQSVTNDWGAAKPLVVEEDKEFMEKKNSLNEF 201
                                 G  K  KQ      GA+   VV+  +   +      E 
Sbjct: 259 FLQAQGKLPLATSTDVASRMLDGAVKLPKQLFGEGGGASSVEVVQPGRGGRDFLRMFKEL 318

Query: 202 EQNLSN--------------------------------VSQQAESLVKCQQDVGETMGEL 229
            Q++SN                                 SQQAESLVK QQD+GETMGEL
Sbjct: 319 RQSVSNDWGGSKPPVVEEDKEFLEKKEKMYDLEQQIINASQQAESLVKAQQDMGETMGEL 378

Query: 230 GLAFVKLTKFETEEAMFDSQQVRAADMRNVATAAVKASRLYRELNTQTIKHLDKLHEYLG 289
           GLAF+KLTKFE EEA+F+SQ+ RA DM+N+AT+AVKASR YRELN+QT+KHLD LH+YLG
Sbjct: 379 GLAFIKLTKFENEEAVFNSQRARANDMKNLATSAVKASRFYRELNSQTVKHLDTLHDYLG 438

Query: 290 TMLAVNNAFSDRSSALLTVQTLSTELASLHSRIEKLELASSKIFGGDKTRLRKIDELKEA 349
            M+AV  AF+DRSSALLTVQTL +EL+SL +R EKLE+ASSK+FGGDK+R++KI+ELKE 
Sbjct: 439 LMMAVQGAFADRSSALLTVQTLLSELSSLEARAEKLEVASSKVFGGDKSRIKKIEELKET 498

Query: 350 VRVTENAKVCADKEYERIKENNRSELERIDRERHNDFQNMLRGFVVNQAGYAEKMAAVWE 409
           ++VTE++K  A +EYE+IKENN SE+ER+DRER  DF NM++GFV NQ GYAEK+A VW 
Sbjct: 499 IKVTEDSKNVAIREYEQIKENNWSEVERLDRERRADFLNMMKGFVANQVGYAEKIANVWT 558

Query: 410 KLAEETATYSRDSS 423
           K+AEET  Y R+SS
Sbjct: 559 KVAEETRQYDRESS 572


>AT5G58440.1 | Symbols: SNX2a | sorting nexin 2A |
           chr5:23624154-23626676 REVERSE LENGTH=587
          Length = 587

 Score =  389 bits (1000), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/259 (71%), Positives = 221/259 (85%)

Query: 163 LGIFKELKQSVTNDWGAAKPLVVEEDKEFMEKKNSLNEFEQNLSNVSQQAESLVKCQQDV 222
           L +FKEL+QSV+NDWG +KP VVEEDKEF+EKK  +++ EQ + N SQQAESLVK QQD+
Sbjct: 325 LRLFKELRQSVSNDWGGSKPPVVEEDKEFLEKKEKMHDLEQQIINASQQAESLVKAQQDM 384

Query: 223 GETMGELGLAFVKLTKFETEEAMFDSQQVRAADMRNVATAAVKASRLYRELNTQTIKHLD 282
           GETMGELGLAF+KLTKFE EEA+ + Q+ RA DM+N+ATAAVKASR YRELN+QT+KHLD
Sbjct: 385 GETMGELGLAFIKLTKFENEEAVCNPQRTRANDMKNLATAAVKASRFYRELNSQTVKHLD 444

Query: 283 KLHEYLGTMLAVNNAFSDRSSALLTVQTLSTELASLHSRIEKLELASSKIFGGDKTRLRK 342
            LHEYLG M+AV  AF+DRSSALLTVQTL +EL SL +R+EKLE ASSK+FGGDK+R+RK
Sbjct: 445 TLHEYLGMMMAVQGAFADRSSALLTVQTLLSELPSLQTRVEKLEAASSKVFGGDKSRIRK 504

Query: 343 IDELKEAVRVTENAKVCADKEYERIKENNRSELERIDRERHNDFQNMLRGFVVNQAGYAE 402
           I+ELKE ++VTE+AK  A K YERIKENNRSE+ER+DRER  DF NM++GFVVNQ GYAE
Sbjct: 505 IEELKETIKVTEDAKNVAIKGYERIKENNRSEVERLDRERRADFMNMMKGFVVNQVGYAE 564

Query: 403 KMAAVWEKLAEETATYSRD 421
           KM  VW K+AEET+ Y R+
Sbjct: 565 KMGNVWAKVAEETSQYDRE 583



 Score =  168 bits (425), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 77/115 (66%), Positives = 98/115 (85%), Gaps = 1/115 (0%)

Query: 58  DYLHISVSDPQEEQDLTNSLVGGNTFQTYLITTRTNVPELGGPGSEYSVRRRFREVVTLS 117
           DY+ I+VS+PQ+EQ+++NS+VGGNT+ TY ITTRTN+P+ GGP SE+SVRRRFR+VVTL+
Sbjct: 151 DYIKITVSNPQKEQEISNSIVGGNTYITYQITTRTNLPDFGGP-SEFSVRRRFRDVVTLA 209

Query: 118 ERLSEAYRGYVIPVRPEKSTVERQVMQKGEFVEQRRVALEKYLRKLGIFKELKQS 172
           +RL+E YRG+ IP RP+KS VE QVMQK EFVEQRRVALEKYLR+L     ++ S
Sbjct: 210 DRLAETYRGFCIPPRPDKSVVESQVMQKQEFVEQRRVALEKYLRRLSAHPVIRNS 264


>AT5G06140.1 | Symbols: SNX1, ATSNX1 | sorting nexin 1 |
           chr5:1856212-1858752 REVERSE LENGTH=402
          Length = 402

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 179/421 (42%), Gaps = 78/421 (18%)

Query: 46  ATTHEPTTQSGSDYLHISVSDPQEEQDLTNSLVGGNTFQTYLITTRTNVPELGGPGSEYS 105
            +   P + S   YL +SV+DP +   L N   G   + +Y + T+TN+PE  GP  E  
Sbjct: 12  GSMQSPRSPSSHPYLSVSVTDPVK---LGN---GVQAYISYRVITKTNLPEYQGP--EKI 63

Query: 106 VRRRFREVVTLSERLSEAYRGYVIPVRPEKSTVERQVMQKGEFVEQRRVALEKYLRKLGI 165
           V RR+ + V L +RL E Y+G  IP  PEKS VE+      EF+E RR AL+ ++ ++ +
Sbjct: 64  VIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK-FRFSAEFIEMRRAALDIFVNRIAL 122

Query: 166 FKELKQS-----------VTND-------------------------------WGAAKPL 183
             EL+QS            T D                                G  KP 
Sbjct: 123 HPELQQSEDLRTFLQADEETMDRFRFQETSIFKKPADLMQMFRDVQSKVSDAVLGKEKP- 181

Query: 184 VVEEDKEFMEKKNSLNEFEQNLSNVSQQAESLVKCQQDVGETMGELGLAFVKLTKFETEE 243
           V E   ++ + K+ + E E +L+   + A  LVK  +++G+++ + G A   L   E E 
Sbjct: 182 VEETTADYEKLKHYIFELENHLTEAQKHAYRLVKRHRELGQSLLDFGKAVKLLGACEGEP 241

Query: 244 AMFDSQQVRAADMRNVATAA-VKASRLYRELNTQTIKHLDKLHEYLGTMLAVNNAFSDRS 302
                         ++ T + + + +L +E     +   + L +Y+  + ++    ++R 
Sbjct: 242 T--------GKAFSDLGTKSELLSIKLQKEAQQVLMNFEEPLKDYVRYVQSIKATIAERG 293

Query: 303 SALLTVQTLS--TELASLHSRIEKLELASSKIFGGDKTRLRKID-ELKEAVRVTENAKVC 359
           +A      LS  T+L  ++  ++KL L  S   G  +   R+I  E +EA R        
Sbjct: 294 TAFKQHCELSETTKLKEIN--LDKLMLTRSDKVGEAEIEYREIKAESEEATR-------- 343

Query: 360 ADKEYERIKENNRSELERIDRERHNDFQNMLRGFVVNQAGYAEKMAAVWEKLAEET-ATY 418
               +ERI +    E+ R   ++  +       F   QA  A  +A  W  L  +  A+Y
Sbjct: 344 ---RFERIVKRMEDEIVRFQEQKTEEMGVAFHQFAKGQARLANSVADAWRSLLPKLEASY 400

Query: 419 S 419
           S
Sbjct: 401 S 401