Miyakogusa Predicted Gene
- Lj2g3v2827810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2827810.1 CUFF.39323.1
(539 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosph... 803 0.0
AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 714 0.0
AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 404 e-113
AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosph... 281 6e-76
AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 263 2e-70
AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 251 1e-66
AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 217 2e-56
AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosph... 214 2e-55
AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides,... 209 3e-54
AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 205 6e-53
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosph... 201 1e-51
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosph... 201 1e-51
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase... 198 8e-51
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 196 2e-50
AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |... 196 5e-50
AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosph... 193 3e-49
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 192 4e-49
AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosph... 191 9e-49
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA... 187 2e-47
AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family prote... 187 2e-47
AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 187 2e-47
AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 187 2e-47
AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 | ch... 185 6e-47
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 184 2e-46
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ... 182 5e-46
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 180 2e-45
AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosph... 180 2e-45
AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosph... 179 5e-45
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 178 7e-45
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 178 7e-45
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 178 7e-45
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 178 8e-45
AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosph... 178 1e-44
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 177 2e-44
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 177 2e-44
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 175 6e-44
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 174 2e-43
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |... 173 4e-43
AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 172 4e-43
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 172 7e-43
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 171 1e-42
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 169 6e-42
AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosph... 163 3e-40
AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 162 6e-40
AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 160 2e-39
AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 160 2e-39
AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 160 3e-39
AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 160 3e-39
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosph... 158 1e-38
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor ... 157 1e-38
AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 155 8e-38
AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 155 8e-38
AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosph... 155 9e-38
AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 155 9e-38
AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 154 1e-37
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 154 2e-37
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 153 2e-37
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 153 3e-37
AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiatio... 150 2e-36
AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 150 2e-36
AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | c... 149 6e-36
AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 148 1e-35
AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosph... 145 8e-35
AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family prot... 144 2e-34
AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 140 2e-33
AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosph... 140 2e-33
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosph... 140 2e-33
AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWAR... 139 5e-33
AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 135 1e-31
AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 134 2e-31
AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosph... 134 2e-31
AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:900142... 132 8e-31
AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosph... 124 2e-28
AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleos... 122 8e-28
AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosph... 113 4e-25
AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside triph... 108 9e-24
AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosph... 92 1e-18
AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 68 1e-11
>AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:1612077-1615195
FORWARD LENGTH=593
Length = 593
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/517 (73%), Positives = 450/517 (87%), Gaps = 5/517 (0%)
Query: 1 MDSSEFPNKALTSTRFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDA 60
MDSS NKALT TRFS+L PPLS +++AL S F+FCTPVQAATIPLLCS+KDVAVDA
Sbjct: 1 MDSSANINKALTETRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDA 60
Query: 61 ATGSGKTLAFVLPLVEILRRSSP-KPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNI 119
ATGSGKTLAFV+PLVEILRRS+ PKPHQV+G+IISPTRELS+QIY+VAQPF+STL N+
Sbjct: 61 ATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANV 120
Query: 120 KSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLL 179
S+LLVGG +VKADMK IEEEG N+LIGTPGRL DIM RM+ILDF+ LEILILDEADRLL
Sbjct: 121 NSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLL 180
Query: 180 DMGFQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPAT 239
+MGFQ+Q+ II++LPK RRTGLFSATQTE VEELAKAGLRNPVRVEVRA++K +
Sbjct: 181 EMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSK----SES 236
Query: 240 AKQLESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPH 299
++QL +SKTPSGLH+EY+ECEADKK SQLVD L+KN KK+I++FMTCA VD+WG VL
Sbjct: 237 SQQLTNSKTPSGLHLEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSK 296
Query: 300 ISVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPP 359
I LK SLIP+HG MKQ R+KALASFT S+G LLCTDVAARGLDIPG+D +VQYDPP
Sbjct: 297 IPALKSISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPP 356
Query: 360 QDPNVFIHRVGRTARLGKQGHAVVFLLPKEDSYVEFLRIRRVPLQEIRCSDDAPDVVPQI 419
QDPN+F HR GRTARLG+QG A+VFLLPKE++YVEF+RIRRVPL+E +CS+DA DV+P I
Sbjct: 357 QDPNMFNHRAGRTARLGRQGRAIVFLLPKEEAYVEFMRIRRVPLEERKCSEDASDVIPII 416
Query: 420 RSAAKKDRDIMEKGVKAFVSYIRAYKEHHCSYIFRWRELEIGKLAMGHGLLRLPLVPEVK 479
RSAA KDR +MEKG+KAFVS++RAYKEHHCS+IFRW++LEIGKLAMG+GLL LP + EVK
Sbjct: 417 RSAAMKDRAVMEKGLKAFVSFVRAYKEHHCSFIFRWKDLEIGKLAMGYGLLYLPSMSEVK 476
Query: 480 QNSLSTKGFEPVEDINFEDIKYRDKSREKQRKKNLQV 516
Q+ LS++GF PVE + FE+IK++DK REKQR++NLQV
Sbjct: 477 QHRLSSEGFTPVEGVKFEEIKFKDKYREKQRQQNLQV 513
>AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26897235-26899381 REVERSE LENGTH=558
Length = 558
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/517 (66%), Positives = 417/517 (80%), Gaps = 18/517 (3%)
Query: 1 MDSSEFPNKALTST--RFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAV 58
MDSS P K +T RFSEL PPLSE +++AL SGF+ CTPVQA TIP LCS KDV V
Sbjct: 1 MDSS--PPKTITKALPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVV 58
Query: 59 DAATGSGKTLAFVLPLVEILRRS-SPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLV 117
DAATGSGKTLAF+LP +EI+RRS S PKPHQV+G+IISPTRELS+QI+ VA+PF+STL
Sbjct: 59 DAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLP 118
Query: 118 NIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADR 177
N+ S+LLVGG +V+ADM +EEEG N+LIGTPGRL D+M RM+ LDF+ LEILILDEADR
Sbjct: 119 NVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADR 178
Query: 178 LLDMGFQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDP 237
LLDMGFQKQ+ II++LPK RRTGLFSATQT+AV +LAKAGLRN + V AE+K
Sbjct: 179 LLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESK----- 233
Query: 238 ATAKQLESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVL 297
SKT SGL+ EYL+CEAD+K SQLV L++N++KK++++FMTCACVD+WG VL
Sbjct: 234 --------SKTSSGLYCEYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVL 285
Query: 298 PHISVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYD 357
I LK S HGKM Q R+ ALASFT S+G+LLCTDVAARGLDIPG+D +VQYD
Sbjct: 286 SKIPTLKSISFFSTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYD 345
Query: 358 PPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEDSYVEFLRIRRVPLQEIRCSDDAPDVVP 417
PPQDP+VFIHRVGRTAR+ +QG A+VFL+PKE YVEF+RIRRVPLQE +CS++A DV+P
Sbjct: 346 PPQDPDVFIHRVGRTARMERQGRAIVFLMPKETDYVEFMRIRRVPLQERKCSENASDVIP 405
Query: 418 QIRSAAKKDRDIMEKGVKAFVSYIRAYKEHHCSYIFRWRELEIGKLAMGHGLLRLPLVPE 477
IRS A KDR ++EKG++AFVS++RAYKEHHCSYIF W+ LEIGKLAMG+G+L P + E
Sbjct: 406 IIRSLAIKDRAVLEKGLQAFVSFVRAYKEHHCSYIFSWKGLEIGKLAMGYGILSFPYISE 465
Query: 478 VKQNSLSTKGFEPVEDINFEDIKYRDKSREKQRKKNL 514
VKQ+ + GF PV+ I FEDIKY++KSREKQR++NL
Sbjct: 466 VKQDRIGIVGFTPVQGITFEDIKYKNKSREKQRQQNL 502
>AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26870262-26872152 REVERSE LENGTH=465
Length = 465
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/353 (58%), Positives = 250/353 (70%), Gaps = 45/353 (12%)
Query: 1 MDSSEFPNKALTST--RFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAV 58
MDSS PN + RFSEL PPLSE +++AL SGF+ CTPVQA TIP LCS KDV V
Sbjct: 1 MDSSP-PNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVV 59
Query: 59 DAATGSGKTLAFVLPLVEILRRS-SPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLV 117
DAATGSGKTLAF+LP +EI+RRS S PKPHQV+G+IISPTRELS+QI+ VA+
Sbjct: 60 DAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFA 119
Query: 118 NIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADR 177
+ +V+ADM +EEEG N+LIGTPGRL D+M RM+ LDF+ LEILILDEADR
Sbjct: 120 KCR--------EVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADR 171
Query: 178 LLDMGFQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDP 237
LLDMGFQKQ+ II++LPK RRTGLFSATQT+AV +LAKAGLRNP
Sbjct: 172 LLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNP--------------- 216
Query: 238 ATAKQLESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVL 297
YL+CEAD+K SQLV L++N++KK++++FMTCACVD+WG V+
Sbjct: 217 ------------------YLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVI 258
Query: 298 PHISVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGV 350
I LK S P HGKM Q R+ ALASFT S+G+LLCTDVAARGLDIPG+
Sbjct: 259 SKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGI 311
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 87/113 (76%), Gaps = 7/113 (6%)
Query: 408 CSD------DAPDVVPQIRSAAKKDRDIMEKGVKAFVSYIRAYKEHHCSYIFRWRELEIG 461
C+D D P +V IRS A KDR+++EKG+KAFVS++RAYKEH CSYIF W+ LEIG
Sbjct: 298 CTDVAARGLDIPGIV-YIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIG 356
Query: 462 KLAMGHGLLRLPLVPEVKQNSLSTKGFEPVEDINFEDIKYRDKSREKQRKKNL 514
KLAMG+G+L P + EVKQ+ + GF PV+ I FEDIK+++KSREKQR++NL
Sbjct: 357 KLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNL 409
>AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:6399724-6403007
REVERSE LENGTH=568
Length = 568
Score = 281 bits (720), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 168/454 (37%), Positives = 255/454 (56%), Gaps = 28/454 (6%)
Query: 11 LTSTRFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAF 70
+T+ F L+ LSE A+ + GF + T +QA +I L KDV A TGSGKTLAF
Sbjct: 86 MTNVTFDSLD--LSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAF 143
Query: 71 VLPLVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDV 130
++P VE+L + P+ + I+I PTREL+ Q +VA+ + SM+ +GG +
Sbjct: 144 LIPAVELLFKERFSPRNGTGV-IVICPTRELAIQTKNVAEELLKHHSQTVSMV-IGGNNR 201
Query: 131 KADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSI 190
+++ ++I G N++I TPGRL D + +K L+ L++DEADR+L+ F++ + I
Sbjct: 202 RSEAQRIAS-GSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKI 260
Query: 191 ITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPS 250
+ LPK R+T LFSATQT V++LA+ L +PV V+V ++ T
Sbjct: 261 LKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKV-------------TNE 307
Query: 251 GLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLK--GFSL 308
GL Y + ++ L+ FL KN +KKI+++F TC V F H ++K +
Sbjct: 308 GLEQGYCVVPSKQRLILLISFLKKNLNKKIMVFFSTCKSVQF------HTEIMKISDVDV 361
Query: 309 IPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHR 368
+HG M Q R K F GILLCTDVAARGLDIP VD I+QYDPP P +IHR
Sbjct: 362 SDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHR 421
Query: 369 VGRTAR-LGKQGHAVVFLLPKEDSYVEFLRIRRVPLQEIRCSDDA-PDVVPQIRSAAKKD 426
VGRTAR G +G A++ L+P+E ++ +L+ +VP++E+ ++ +V + KD
Sbjct: 422 VGRTARGEGAKGKALLVLIPEELQFIRYLKAAKVPVKELEFNEKRLSNVQSALEKCVAKD 481
Query: 427 RDIMEKGVKAFVSYIRAYKEHHCSYIFRWRELEI 460
++ + A+ +Y+ AY H IF L++
Sbjct: 482 YNLNKLAKDAYRAYLSAYNSHSLKDIFNVHRLDL 515
>AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:26358328-26361244 FORWARD LENGTH=633
Length = 633
Score = 263 bits (673), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 164/468 (35%), Positives = 254/468 (54%), Gaps = 25/468 (5%)
Query: 11 LTSTRFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAF 70
+T+ F L+ LS+ +++ + GF T +QA IP L +DV A TGSGKTLAF
Sbjct: 151 MTNKTFESLS--LSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAF 208
Query: 71 VLPLVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDV 130
++P VE+L R P+ + ++I PTREL+ Q Y VA+ + + +++ V G +
Sbjct: 209 LIPAVELLYRVKFTPRNGTGV-LVICPTRELAIQSYGVAKELLK--YHSQTVGKVIGGEK 265
Query: 131 KADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSI 190
+ +I +GVN+L+ TPGRL D + + FK L+ L++DEADR+L+ F++ L I
Sbjct: 266 RKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKI 325
Query: 191 ITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPS 250
+ LPK R+T LFSATQ+ VE+LA+ L +PV ++V K T
Sbjct: 326 LNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEV-------------TNE 372
Query: 251 GLHIEYLECEADKKPSQLVDFLVKNRS-KKIIIYFMTCACVDFWGTVLPHISVLKGFSLI 309
GL Y + + L+ FL + + KKI+++F TC F + +I F +
Sbjct: 373 GLEQGYCVVPSAMRLLFLLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIK----FDCL 428
Query: 310 PLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRV 369
+ G + Q R F GILLCT+VAARGLD P VD IVQYDPP +P +IHRV
Sbjct: 429 EIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRV 488
Query: 370 GRTAR-LGKQGHAVVFLLPKEDSYVEFLRIRRVPLQEIRCSDDA-PDVVPQIRSAAKKDR 427
GRTAR G +G A++ L P+E ++++L+ ++P++E + DV P + + ++
Sbjct: 489 GRTARGEGAKGKALLVLTPQELKFIQYLKAAKIPVEEHEFEEKKLLDVKPFVENLISENY 548
Query: 428 DIMEKGVKAFVSYIRAYKEHHCSYIFRWRELEIGKLAMGHGLLRLPLV 475
+ E +A+ +YI Y H +F +L + ++A G P V
Sbjct: 549 ALKESAKEAYKTYISGYDSHSMKDVFNVHQLNLTEVATSFGFSDPPKV 596
>AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:22298668-22301719 REVERSE LENGTH=739
Length = 739
Score = 251 bits (641), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 172/474 (36%), Positives = 256/474 (54%), Gaps = 26/474 (5%)
Query: 15 RFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPL 74
+F++L P+S+ + L D+ + T VQ+A IP +D+ A TGSGKTLAFV+P+
Sbjct: 72 KFAQL--PISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 75 VEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADM 134
+E L R P+ V IIISPTREL++Q + V + + LL+GG + D+
Sbjct: 130 LEKLHRERWSPE-DGVGCIIISPTRELAAQTFGVLNK-VGKFHKFSAGLLIGGRE-GVDV 186
Query: 135 KKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQL 194
+K +NIL+ PGRL M+ + +L+ILILDEADR+LD F+ QL II+QL
Sbjct: 187 EKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQL 246
Query: 195 PKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHI 254
PK R+T LFSATQT+ V++LA+ LR+P + V AE A TP+ L
Sbjct: 247 PKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTA-------------TPTSLMQ 293
Query: 255 EYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGK 314
+ +KK L F+ + + +I+++ T V F + G L LHGK
Sbjct: 294 TVMIVPVEKKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLR--PGIPLKSLHGK 351
Query: 315 MKQTVREKALASFTSLSNGILLCTDVAARGLDI-PGVDCIVQYDPPQDPNVFIHRVGRTA 373
M Q R + F +L CTDV ARGLD VD +VQ D P+D +IHRVGRTA
Sbjct: 352 MSQEKRMGVYSQFIE-RQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTA 410
Query: 374 RLGKQGHAVVFLLPKEDSYVEFLRIRRVPLQEIRCSDDAPDVVPQIRSA-AKKDRDIMEK 432
R QG +++FL P E+ +E L+ +VP++ I+ ++ V ++ +A K D+
Sbjct: 411 RFYTQGKSLLFLTPSEEKMIEKLQEAKVPIKLIKANNQKLQEVSRLLAALLVKYPDLQGV 470
Query: 433 GVKAFVSYIRAYKEHHCSYIFRWRELEIGKLAMGHGLLRLPLVPEVKQNSLSTK 486
+AF++Y+R+ + IF +L I + G LP+ P ++ +L TK
Sbjct: 471 AQRAFITYLRSIHKRRDKEIFDVSKLSIENFSASLG---LPMTPRIRFTNLKTK 521
>AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:9362176-9366449 REVERSE LENGTH=789
Length = 789
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 148/410 (36%), Positives = 218/410 (53%), Gaps = 52/410 (12%)
Query: 16 FSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLV 75
F ELN LS P+L+A G+ TP+QAA IPL + +D+ A TGSGKT AF LP +
Sbjct: 169 FMELN--LSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
Query: 76 EILRRSSPKPKPHQVLG---IIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKA 132
E L +P +V +I++PTREL+ QI+ + Q ++ +IK L+VGG+ V+
Sbjct: 227 ERLL-----FRPKRVFATRVLILTPTRELAVQIHSMIQN-LAQFTDIKCGLIVGGLSVR- 279
Query: 133 DMKKIEEEGV-----NILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQL 187
E+E V +I++ TPGR+ D + +D +L +LILDEADRLL GF ++
Sbjct: 280 -----EQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEI 334
Query: 188 TSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSK 247
T ++ PK R+T LFSAT TE V+EL K L P+R+ + DP S++
Sbjct: 335 TELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRL--------SADP-------SAR 379
Query: 248 TPSGLHIEYLECEADKKPSQ---LVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLK 304
P GL E + ++ +Q L+ + K+II+ T + L
Sbjct: 380 RPPGLTEEVVRIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFG----LA 435
Query: 305 GFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNV 364
G LHG + Q R +L F L+ TDVAARGLDI GV ++ Y P++ +
Sbjct: 436 GLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDS 495
Query: 365 FIHRVGRTARLGKQGHAVVFLLPKEDSYVEF--------LRIRRVPLQEI 406
++HRVGRTAR G++G+AV F+ + S ++ L+ R +P Q I
Sbjct: 496 YVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPEQSI 545
>AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:16976783-16979392
FORWARD LENGTH=609
Length = 609
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 173/561 (30%), Positives = 260/561 (46%), Gaps = 99/561 (17%)
Query: 2 DSSEFPNKALTSTRFSEL--NPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVD 59
D+S+ + S FS L + LS+ + + + GF+ T VQA IP++ S +DV V+
Sbjct: 17 DASKAKSGLFASCSFSSLGLDTKLSDQLKERM---GFEAPTLVQAQAIPVILSGRDVLVN 73
Query: 60 AATGSGKTLAFVLPLVEILRRSSPK-PKPHQVLGIIISPTRELSSQIYHVAQPFISTLVN 118
A TG+GKT+A++ PL+ L+ SPK + H ++I PTREL Q+Y + +
Sbjct: 74 APTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHW 133
Query: 119 IKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRL 178
I ++GG + KA K +G++ILI TPGRL D + K L +I DEAD +
Sbjct: 134 IVPGYVMGG-EKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSI 192
Query: 179 LDMGFQKQLTSIITQL--------------PK--LRRTGLFSATQTEAVEELAKAGLRNP 222
L++G+ K++ II L PK ++ L SAT + V +LAK L +P
Sbjct: 193 LELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDP 252
Query: 223 VRVEVRAETKRAN----DPA---------------TAKQL-ESSKTPSGLHIEYLECEAD 262
V + + + N PA +A L E PS L YL
Sbjct: 253 VMIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCG 312
Query: 263 KKP----SQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIP-------- 310
+ S L + + S+K++++F T VDF H S+L F P
Sbjct: 313 ARLVALLSVLKNLFEREASQKVVVFFSTRDAVDF------HYSLLSEFQWPPNSETEEEG 366
Query: 311 ------------LHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDP 358
LHG M+Q R A +F + +LL TDVAARGLD P V CI+QYD
Sbjct: 367 TKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDC 426
Query: 359 PQDPNVFIHRVGRTARLGKQGHAVVFLLPKEDSYVEFLR-----IRRVPLQEIRCSDDAP 413
P + ++HRVGRTAR+G++G A++FL P E Y++ L+ + PL ++ P
Sbjct: 427 PGEATEYVHRVGRTARIGEKGEALLFLQPIEIDYLKELKKHGASLTEYPLMKVLDKFPIP 486
Query: 414 DVVPQIR-------------------SAAKKDRDIMEKGVKAFVSYIRAYKEH--HCSYI 452
+P+I+ S + + AFVS++R Y H I
Sbjct: 487 GNMPRIKKVLSLESHPWVISLQRALESLTYAEPKMKSLAKNAFVSWVRGYAAHKGELKSI 546
Query: 453 FRWRELEIGKLAMGHGLLRLP 473
F ++L +G +A L P
Sbjct: 547 FVVKKLHLGHVAKSFALREQP 567
>AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases | chr1:28947887-28951526 REVERSE
LENGTH=845
Length = 845
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/381 (34%), Positives = 212/381 (55%), Gaps = 30/381 (7%)
Query: 16 FSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLV 75
F LN L V A+ G+ TP+Q T+PL+ S DV A TGSGKT AF++P++
Sbjct: 30 FESLN--LGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPML 87
Query: 76 EILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMK 135
E L++ P+ V +I+SPTR+L+ Q + + +++ LLVGG ++ +
Sbjct: 88 EKLKQHVPQGG---VRALILSPTRDLAEQTLKFTKE-LGKFTDLRVSLLVGGDSMEDQFE 143
Query: 136 KIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLP 195
++ + G +++I TPGRL +++ +D + + +E ++ DEAD L MGF +QL I+TQL
Sbjct: 144 ELTK-GPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLS 202
Query: 196 KLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIE 255
+ R+T LFSAT A+ E AKAGLR P V + E K + D L +
Sbjct: 203 ENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPD---------------LKLS 247
Query: 256 YLECEADKKPSQLVDFLVK---NRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLH 312
+L ++K S L+ +LV+ + ++ +I+ T V+F ++ L+ +
Sbjct: 248 FLTVRPEEKYSALL-YLVREHISSDQQTLIFVSTKHHVEFVNSLFK----LENIEPSVCY 302
Query: 313 GKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRT 372
G M Q R+ ++ F + +L+ TD+AARG+DIP +D ++ +D P P +F+HRVGR
Sbjct: 303 GDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRA 362
Query: 373 ARLGKQGHAVVFLLPKEDSYV 393
AR G+ G A F+ P++ Y+
Sbjct: 363 ARAGRTGCAYSFVTPEDMPYM 383
>AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:24546601-24549148 REVERSE LENGTH=456
Length = 456
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 204/379 (53%), Gaps = 40/379 (10%)
Query: 16 FSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLP-- 73
F+EL + E +++A G+ + +QA +P KDV A TGSGKT AF +P
Sbjct: 11 FAELG--VREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPIL 68
Query: 74 --LVEILRRSSPK----PKPHQVLGIIISPTRELSSQIYHVAQPF--ISTLVNIKSMLLV 125
L+E + S PK P P ++SPTREL+ QI A+ F + ++++ +LV
Sbjct: 69 QALLEYVYDSEPKKGRRPDPA-FFACVLSPTRELAIQI---AEQFEALGADISLRCAVLV 124
Query: 126 GGVDVKADMKKIEEEGV--NILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGF 183
GG+D M++ G ++++ TPGRL D M+ K L+ L+LDEADRLL+ F
Sbjct: 125 GGID---RMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDF 181
Query: 184 QKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQL 243
+K L I+ ++P R+T LFSAT T+ V +L +A LRNPV++E ++ + T KQ
Sbjct: 182 EKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVD---TLKQ- 237
Query: 244 ESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVL 303
+Y A K LV L + +I+ TC F VL +
Sbjct: 238 -----------QYRFVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSL--- 283
Query: 304 KGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPN 363
GF IP+ G+M Q+ R AL F + IL+CTDVA+RGLDIP VD ++ YD P +
Sbjct: 284 -GFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSK 342
Query: 364 VFIHRVGRTARLGKQGHAV 382
+IHRVGRTAR G+ G +
Sbjct: 343 DYIHRVGRTARAGRSGVGI 361
>AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476402
REVERSE LENGTH=788
Length = 788
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 139/448 (31%), Positives = 230/448 (51%), Gaps = 36/448 (8%)
Query: 11 LTSTRFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAF 70
LT TRF PLS L+A+ D+G++ T VQ AT+P++ KDV A TG+GKT+AF
Sbjct: 317 LTKTRFDHY--PLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAF 374
Query: 71 VLPLVEILRRS---SPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGG 127
+LP +E++ +S SP K +L ++I PTREL++Q A + +I +++GG
Sbjct: 375 LLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGG 434
Query: 128 VDVKADMKKIEEEGVNILIGTPGRLHDIMNRMD--ILDFKELEILILDEADRLLDMGFQK 185
+ + K+++ IL+ TPGRL D + K +++L+LDEAD LLDMGF+K
Sbjct: 435 TRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRK 494
Query: 186 QLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLES 245
+ II+ +PK R+T LFSAT E V ++ LR R ++ +
Sbjct: 495 DIERIISAVPKERQTFLFSATVPEEVRQICLVALR------------RDHEFVNCVHEGT 542
Query: 246 SKTPSGLHIEYLECEADKKPSQLVDFL----VKNRSKKIIIYFMTCACVDFWGTVLPHIS 301
+T + ++ D+ S L L + N K+I++ T +L ++
Sbjct: 543 IETHQQVRQMHMIASLDRHFSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELN 602
Query: 302 VLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQD 361
+ ++ +H + Q+ R + F IL+ +DV+ARG+D P V ++Q P+D
Sbjct: 603 L----NVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKD 658
Query: 362 PNVFIHRVGRTARLGKQGHAVVFLLPKEDSYVEFLR---IRRVPLQEIRCSDDAPDVVPQ 418
+IHR+GRT R GK+G ++ L P E+ ++ L+ I + PL I P+ V +
Sbjct: 659 REQYIHRLGRTGRKGKEGEGILLLAPWEEYFLSSLKDLPITKSPLPSI-----DPETVKK 713
Query: 419 IRSA-AKKDRDIMEKGVKAFVSYIRAYK 445
++ A + E +A++ Y + K
Sbjct: 714 VQKALCHVEMRNKEAAYQAWLGYYNSQK 741
>AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790341-2794059
FORWARD LENGTH=850
Length = 850
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 140/448 (31%), Positives = 231/448 (51%), Gaps = 36/448 (8%)
Query: 11 LTSTRFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAF 70
L+ TRF + PLS L+A+ D+GF+ T VQ AT+P++ KDV A TG+GKT+AF
Sbjct: 379 LSKTRFDQF--PLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAF 436
Query: 71 VLPLVEILRRSSPKPKPHQ---VLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGG 127
+LP +E + +S P + + ++ +++ PTREL+SQ A + +I +++GG
Sbjct: 437 LLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGG 496
Query: 128 VDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFK--ELEILILDEADRLLDMGFQK 185
+ + ++++ IL+ TPGRL D + + +++L+LDEAD LLDMGF++
Sbjct: 497 TKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRR 556
Query: 186 QLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLES 245
+ II +PK R+T LFSAT E V ++ L KR ++ Q S
Sbjct: 557 DIERIIAAVPKQRQTFLFSATVPEEVRQICHVAL------------KRDHEFINCVQEGS 604
Query: 246 SKTPSGLHIEYLECEADKKPSQL----VDFLVKNRSKKIIIYFMTCACVDFWGTVLPHIS 301
+T + Y+ D+ S L + + N K+II+ T +L +S
Sbjct: 605 GETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLS 664
Query: 302 VLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQD 361
+ ++ +H + Q+ R + F IL+ +DV+ARG+D P V +VQ P D
Sbjct: 665 L----NVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSD 720
Query: 362 PNVFIHRVGRTARLGKQGHAVVFLLPKED---SYVEFLRIRRVPLQEIRCSDDAPDVVPQ 418
+IHR+GRT R GK+G V+ L P E+ S V+ L I + PL I P+ V +
Sbjct: 721 REQYIHRLGRTGRKGKEGEGVLLLAPWEEYFMSSVKDLPITKSPLPPI-----DPEAVKR 775
Query: 419 IRSA-AKKDRDIMEKGVKAFVSYIRAYK 445
++ ++ + E +A++ Y ++ K
Sbjct: 776 VQKGLSQVEMKNKEAAYQAWLGYYKSQK 803
>AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794540-2797548 FORWARD LENGTH=563
Length = 563
Score = 198 bits (504), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 210/396 (53%), Gaps = 27/396 (6%)
Query: 11 LTSTRFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAF 70
L+ TRF + PLS L+ + D+GF T VQ AT+PL+ KD+ A TG+GKT+AF
Sbjct: 77 LSKTRFDQF--PLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAF 134
Query: 71 VLPLVEILRRSSPKPKPHQ---VLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGG 127
+LP +E + ++ P + ++ ++ +++ PTREL+ Q A + +I +++GG
Sbjct: 135 LLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGG 194
Query: 128 VDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFK--ELEILILDEADRLLDMGFQK 185
+ + +++++ IL+ TPGRL D ++ + +++L+LDEAD LLDMGF++
Sbjct: 195 TKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRR 254
Query: 186 QLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLES 245
++ II +PK R+T LFSAT ++ V ++ L KR ++ Q +
Sbjct: 255 EIERIIAAVPKQRQTFLFSATVSDEVRQICHVAL------------KRDHEFVNCVQEGA 302
Query: 246 SKTPSGLHIEYLECEADKKPSQLVDFLVK----NRSKKIIIYFMTCACVDFWGTVLPHIS 301
+T + Y+ D+ S L L K N K+II+ T +L +S
Sbjct: 303 GETHQKVSQMYMIASLDRHFSLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLS 362
Query: 302 VLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQD 361
++ +H + Q+ R + F + IL+ +DV+ARG+D P V +VQ P D
Sbjct: 363 ----LNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSD 418
Query: 362 PNVFIHRVGRTARLGKQGHAVVFLLPKEDSYVEFLR 397
+IHR+GRT R GK+G V+ L P E+ ++ ++
Sbjct: 419 REQYIHRLGRTGRKGKEGEGVLLLAPWEEYFLSSVK 454
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD LENGTH=591
Length = 591
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 211/390 (54%), Gaps = 32/390 (8%)
Query: 26 PVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS--- 82
PVL L + G TP+Q +P++ + +D+ A TGSGKTL FVLP++ I +
Sbjct: 156 PVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMM 215
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVN-----IKSMLLVGGVDVKADMKKI 137
P +G+I+ P+REL+ Q Y V + F++ LV ++S+L +GG+D+++ ++ +
Sbjct: 216 PIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVV 275
Query: 138 EEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKL 197
+ GV+I++ TPGRL D++ + + L LDEADRL+D+GF+ + +
Sbjct: 276 KR-GVHIVVATPGRLKDMLAKKK-MSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQ 333
Query: 198 RRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYL 257
R+T LFSAT ++ A++ L PV V V A A L+ + +EY+
Sbjct: 334 RQTLLFSATMPTKIQIFARSALVKPVTVNV--------GRAGAANLDVIQ-----EVEYV 380
Query: 258 ECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQ 317
+ EA K L++ L K S ++I+ A VD L +LKG + +HG Q
Sbjct: 381 KQEA--KIVYLLECLQKT-SPPVLIFCENKADVDDIHEYL----LLKGVEAVAIHGGKDQ 433
Query: 318 TVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGK 377
RE A++SF + +L+ TDVA++GLD P + ++ YD P + ++HR+GRT R GK
Sbjct: 434 EDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGK 493
Query: 378 QGHAVVFLLPKEDSYVEFLRIRRVPLQEIR 407
G A F + K S L ++ + LQE +
Sbjct: 494 TGIATTF-INKNQSETTLLDLKHL-LQEAK 521
>AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |
chr3:1985697-1989666 REVERSE LENGTH=1088
Length = 1088
Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 204/374 (54%), Gaps = 29/374 (7%)
Query: 27 VLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILR--RSSPK 84
+L+ L +GF TP+QA T P+ +D+ A TGSGKTL +++P +LR R+ +
Sbjct: 446 ILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR 505
Query: 85 PKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNI 144
P +I++PTREL++QI A F + I L GG +K++E G +I
Sbjct: 506 NGP---TVLILAPTRELATQIQDEALRFGRS-SRISCTCLYGGAPKGPQLKELER-GADI 560
Query: 145 LIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGLFS 204
++ TPGRL+DI+ M ++DF+++ +L+LDEADR+LDMGF+ Q+ I+ ++P R+T +++
Sbjct: 561 VVATPGRLNDIL-EMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYT 619
Query: 205 ATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEADKK 264
AT + V ++A L NPV+V + R ++ A K + +Y+E +
Sbjct: 620 ATWPKEVRKIASDLLVNPVQVNI----GRVDELAANKAI----------TQYVEVVPQME 665
Query: 265 PSQLVDFLVKN--RSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREK 322
+ ++ ++++ R K+II+ T D SV + F + +HG Q R+
Sbjct: 666 KERRLEQILRSQERGSKVIIFCSTKRLCDHLAR-----SVGRHFGAVVIHGDKTQGERDW 720
Query: 323 ALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAV 382
L F S + +L+ TDVAARGLDI + ++ YD P ++HR+GRT R G G A
Sbjct: 721 VLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAF 780
Query: 383 VFLLPKEDSYVEFL 396
F ++ Y L
Sbjct: 781 TFFTEQDWKYAPDL 794
>AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:21657099-21660352
FORWARD LENGTH=646
Length = 646
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 192/362 (53%), Gaps = 38/362 (10%)
Query: 40 TPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPKPHQVLGI-----I 94
TPVQ IP+L + +D+ A TGSGKT AF P++ + + +P V G+ I
Sbjct: 170 TPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVI 229
Query: 95 ISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHD 154
+SPTREL+ QI+ A+ F S +K ++ GG V ++++E GV+IL+ TPGRL+D
Sbjct: 230 LSPTRELACQIHDEARKF-SYQTGVKVVVAYGGTPVNQQIRELER-GVDILVATPGRLND 287
Query: 155 IMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQL----PKLRRTGLFSATQTEA 210
++ R + + + L LDEADR+LDMGF+ Q+ I+ Q+ P +R+T LFSAT
Sbjct: 288 LLERGRV-SLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPRE 346
Query: 211 VEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEADKKPSQLVD 270
++ LA L N + + V ++ SS +E++ ++DK+ S L+D
Sbjct: 347 IQRLASDFLSNYIFLAV-------------GRVGSSTDLIVQRVEFVH-DSDKR-SHLMD 391
Query: 271 FLVKNRSKK-------IIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKA 323
L R +++ T D L + + GF +HG Q RE A
Sbjct: 392 LLHAQRENGNQGKQALTLVFVETKKGAD----SLENWLCINGFPATTIHGDRSQQEREVA 447
Query: 324 LASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVV 383
L SF + IL+ TDVAARGLDIP V +V +D P D + ++HR+GRT R G G A
Sbjct: 448 LRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATA 507
Query: 384 FL 385
F
Sbjct: 508 FF 509
>AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=542
Length = 542
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 131/393 (33%), Positives = 214/393 (54%), Gaps = 38/393 (9%)
Query: 26 PVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLV------EILR 79
P+L+ L D G TP+Q +P++ S +D+ A TGSGKTL FVLP++ EI+
Sbjct: 107 PLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMM 166
Query: 80 RSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVN-----IKSMLLVGGVDVKADM 134
+ P + ++I P+REL+ Q Y V + F+++LV ++S+L +GGVD+++ +
Sbjct: 167 PIAAGEGP---IALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQL 223
Query: 135 KKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQL 194
+++ GV+I++ TPGRL DI+ + + +L LDEADRL+D+GF+ + +
Sbjct: 224 DVVKK-GVHIVVATPGRLKDILAKKK-MSLDACRLLTLDEADRLVDLGFEDDIRHVFDHF 281
Query: 195 PKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHI 254
R+T LFSAT ++ A + L PV V V A A L+ + +
Sbjct: 282 KSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGR--------AGAANLDVIQ-----EV 328
Query: 255 EYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGK 314
EY++ EA K L++ L K + ++I+ A VD L +LKG + +HG
Sbjct: 329 EYVKQEA--KIVYLLECLQKT-TPPVLIFCENKADVDDIHEYL----LLKGVEAVAIHGG 381
Query: 315 MKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTAR 374
Q R+ A++ F + +L+ TDVA++GLD P + ++ YD P + ++HR+GRT R
Sbjct: 382 KDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGR 441
Query: 375 LGKQGHAVVFLLPKEDSYVEFLRIRRVPLQEIR 407
GK G A F + K S + L ++ + LQE +
Sbjct: 442 CGKTGIATTF-INKNQSEITLLDLKHL-LQEAK 472
>AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:17705382-17708744
FORWARD LENGTH=633
Length = 633
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 194/362 (53%), Gaps = 38/362 (10%)
Query: 40 TPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPKPHQV-----LGII 94
TPVQ IP+L +D+ A TGSGKT AF P++ + + +P L +I
Sbjct: 183 TPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVI 242
Query: 95 ISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHD 154
+SPTREL+SQI+ A+ F S +K ++ GG + ++++E GV+IL+ TPGRL+D
Sbjct: 243 LSPTRELASQIHDEAKKF-SYQTGVKVVVAYGGTPINQQLRELER-GVDILVATPGRLND 300
Query: 155 IMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQL---PK-LRRTGLFSATQTEA 210
++ R + + + L LDEADR+LDMGF+ Q+ I+ Q+ P+ +R+T LFSAT
Sbjct: 301 LLERARV-SMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPRE 359
Query: 211 VEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEADKKPSQLVD 270
++ LA L N + + V ++ SS +E++ ++DK+ S L+D
Sbjct: 360 IQRLAADFLANYIFLAV-------------GRVGSSTDLIVQRVEFV-LDSDKR-SHLMD 404
Query: 271 FLVKNRSKKI-------IIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKA 323
L R I +++ T D L + + GF +HG Q RE A
Sbjct: 405 LLHAQRENGIQGKQALTLVFVETKRGAD----SLENWLCINGFPATSIHGDRTQQEREVA 460
Query: 324 LASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVV 383
L +F S IL+ TDVAARGLDIP V +V +D P D + ++HR+GRT R GK G A
Sbjct: 461 LKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATA 520
Query: 384 FL 385
F
Sbjct: 521 FF 522
>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Length = 616
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 205/370 (55%), Gaps = 29/370 (7%)
Query: 17 SELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVE 76
SEL +S +++AL+ G + P+Q A + +D+ A TG+GKTLAF +P+++
Sbjct: 107 SELG--ISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 164
Query: 77 -ILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMK 135
I++ ++ + L ++++PTREL+ Q V + F + ++ ++ L GG + M+
Sbjct: 165 KIIKYNAKHGRGRNPLCLVLAPTRELARQ---VEKEFRESAPSLDTICLYGGTPIGQQMR 221
Query: 136 KIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLP 195
+++ GV++ +GTPGR+ D+M R L+ E++ ++LDEAD++L +GF + + I+ +LP
Sbjct: 222 QLDY-GVDVAVGTPGRVIDLMKR-GALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLP 279
Query: 196 KLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIE 255
+ R++ +FSAT + L K L NP+ V++ ++ + K G+
Sbjct: 280 EKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQ-------------KLADGITTY 326
Query: 256 YLECEADKKPSQLVDFLVKNRSK--KIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHG 313
+ ++ + S ++ LV +K K I++ T D L + F LHG
Sbjct: 327 SIIADSYGRAS-IIGPLVTEHAKGGKCIVFTQTKRDADRLSYALA-----RSFKCEALHG 380
Query: 314 KMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTA 373
+ Q+ RE+ LA F IL+ TDVAARGLD+P VD I+ Y+ P + F+HR GRT
Sbjct: 381 DISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTG 440
Query: 374 RLGKQGHAVV 383
R GK+G A++
Sbjct: 441 RAGKKGSAIL 450
>AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 192/360 (53%), Gaps = 36/360 (10%)
Query: 40 TPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPKPHQV-----LGII 94
TPVQ IP+L + +D+ A TGSGKT AF P++ + + +P +I
Sbjct: 175 TPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVI 234
Query: 95 ISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHD 154
+SPTREL+ QI+ A+ F S +K ++ GG + ++++E G +IL+ TPGRL+D
Sbjct: 235 LSPTRELACQIHDEAKKF-SYQTGVKVVVAYGGTPIHQQLRELER-GCDILVATPGRLND 292
Query: 155 IMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQL---PK-LRRTGLFSATQTEA 210
++ R + + + L LDEADR+LDMGF+ Q+ I+ Q+ P+ +R+T LFSAT
Sbjct: 293 LLERARV-SMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQ 351
Query: 211 VEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEADKKPSQLVD 270
++ LA + N + + V ++ SS +E+++ E+DK+ S L+D
Sbjct: 352 IQRLAADFMSNYIFLAV-------------GRVGSSTDLITQRVEFVQ-ESDKR-SHLMD 396
Query: 271 FLVKNRSKK-----IIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALA 325
L R + +++ T D L + + F +HG Q RE AL
Sbjct: 397 LLHAQRETQDKQSLTLVFVETKRGAD----TLENWLCMNEFPATSIHGDRTQQEREVALR 452
Query: 326 SFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFL 385
SF + IL+ TDVAARGLDIP V +V +D P D + ++HR+GRT R GK G A F
Sbjct: 453 SFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFF 512
>AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 192/360 (53%), Gaps = 36/360 (10%)
Query: 40 TPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPKPHQV-----LGII 94
TPVQ IP+L + +D+ A TGSGKT AF P++ + + +P +I
Sbjct: 175 TPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVI 234
Query: 95 ISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHD 154
+SPTREL+ QI+ A+ F S +K ++ GG + ++++E G +IL+ TPGRL+D
Sbjct: 235 LSPTRELACQIHDEAKKF-SYQTGVKVVVAYGGTPIHQQLRELER-GCDILVATPGRLND 292
Query: 155 IMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQL---PK-LRRTGLFSATQTEA 210
++ R + + + L LDEADR+LDMGF+ Q+ I+ Q+ P+ +R+T LFSAT
Sbjct: 293 LLERARV-SMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQ 351
Query: 211 VEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEADKKPSQLVD 270
++ LA + N + + V ++ SS +E+++ E+DK+ S L+D
Sbjct: 352 IQRLAADFMSNYIFLAV-------------GRVGSSTDLITQRVEFVQ-ESDKR-SHLMD 396
Query: 271 FLVKNRSKK-----IIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALA 325
L R + +++ T D L + + F +HG Q RE AL
Sbjct: 397 LLHAQRETQDKQSLTLVFVETKRGAD----TLENWLCMNEFPATSIHGDRTQQEREVALR 452
Query: 326 SFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFL 385
SF + IL+ TDVAARGLDIP V +V +D P D + ++HR+GRT R GK G A F
Sbjct: 453 SFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFF 512
>AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 192/360 (53%), Gaps = 36/360 (10%)
Query: 40 TPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPKPHQV-----LGII 94
TPVQ IP+L + +D+ A TGSGKT AF P++ + + +P +I
Sbjct: 175 TPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVI 234
Query: 95 ISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHD 154
+SPTREL+ QI+ A+ F S +K ++ GG + ++++E G +IL+ TPGRL+D
Sbjct: 235 LSPTRELACQIHDEAKKF-SYQTGVKVVVAYGGTPIHQQLRELER-GCDILVATPGRLND 292
Query: 155 IMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQL---PK-LRRTGLFSATQTEA 210
++ R + + + L LDEADR+LDMGF+ Q+ I+ Q+ P+ +R+T LFSAT
Sbjct: 293 LLERARV-SMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQ 351
Query: 211 VEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEADKKPSQLVD 270
++ LA + N + + V ++ SS +E+++ E+DK+ S L+D
Sbjct: 352 IQRLAADFMSNYIFLAV-------------GRVGSSTDLITQRVEFVQ-ESDKR-SHLMD 396
Query: 271 FLVKNRSKK-----IIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALA 325
L R + +++ T D L + + F +HG Q RE AL
Sbjct: 397 LLHAQRETQDKQSLTLVFVETKRGAD----TLENWLCMNEFPATSIHGDRTQQEREVALR 452
Query: 326 SFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFL 385
SF + IL+ TDVAARGLDIP V +V +D P D + ++HR+GRT R GK G A F
Sbjct: 453 SFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFF 512
>AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 |
chr1:5568482-5570487 REVERSE LENGTH=491
Length = 491
Score = 185 bits (470), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 200/378 (52%), Gaps = 37/378 (9%)
Query: 12 TSTRFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFV 71
++T F L L+E ++ + G TPVQ +P + + +DV A TGSGKT AF
Sbjct: 56 SATNFEGLG--LAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFA 113
Query: 72 LPLVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPF--ISTLVNIKSMLLVGGVD 129
LP++ L P+ V ++++PTREL+ + +A+ F + + +N++ ++VGG+D
Sbjct: 114 LPILHRLAED-----PYGVFALVVTPTRELA---FQLAEQFKALGSCLNLRCSVIVGGMD 165
Query: 130 VKADMKKIEEEGVNILIGTPGRLHDIM-NRMDILD-FKELEILILDEADRLLDMGFQKQL 187
+ + +I+I TPGR+ ++ N D+ F + L+LDEADR+LD+GFQ +L
Sbjct: 166 MLTQTMSLVSRP-HIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDEL 224
Query: 188 TSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSK 247
+I LPK R+T LFSAT T ++ L + +N + E K
Sbjct: 225 RTIFQCLPKSRQTLLFSATMTSNLQALLEHS---------------SNKAYFYEAYEGLK 269
Query: 248 TPSGLHIEYLECEADKKPSQLVDFLVKNRSKKI---IIYFMTCACVDFWGTVLPHISVLK 304
T L +++ + D K LV L + K I +I+ TC +L + V
Sbjct: 270 TVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVEN 329
Query: 305 GFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNV 364
I +H Q++R AL+ F S ILL TDVA+RGLDIP VD ++ YD P+DP
Sbjct: 330 ----IAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRD 385
Query: 365 FIHRVGRTARLGKQGHAV 382
++HRVGRTAR G+ G AV
Sbjct: 386 YVHRVGRTARAGRGGLAV 403
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 131/376 (34%), Positives = 201/376 (53%), Gaps = 34/376 (9%)
Query: 16 FSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLP-L 74
F + N P + +L+A+ GF TP+QA P+ +D+ A TGSGKTLA++LP L
Sbjct: 167 FQDANFP--DNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAL 224
Query: 75 VEILRRSSPKPKPHQVLG---IIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVK 131
V + S +P+ Q G +I++PTREL+ QI ++ F ++S + GG
Sbjct: 225 VHV----SAQPRLGQDDGPIVLILAPTRELAVQIQEESRKF-GLRSGVRSTCIYGGAPKG 279
Query: 132 ADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSII 191
++ + GV I+I TPGRL D++ + K + L+LDEADR+LDMGF+ Q+ I+
Sbjct: 280 PQIRDLRR-GVEIVIATPGRLIDMLE-CQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIV 337
Query: 192 TQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSG 251
+Q+ R+T L+SAT VE LA+ LR+P + + + +AN + + +E TP
Sbjct: 338 SQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQ-SINQVIEIVPTPEK 396
Query: 252 LH--IEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLI 309
+ + L+ QL+D KI+I+ T D L + G+ +
Sbjct: 397 YNRLLTLLK--------QLMD------GSKILIFVETKRGCDQVTRQL----RMDGWPAL 438
Query: 310 PLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRV 369
+HG Q+ R++ LA F S + I+ TDVAARGLD+ + C+V YD P +IHR+
Sbjct: 439 AIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRI 498
Query: 370 GRTARLGKQGHAVVFL 385
GRT R G +G A F
Sbjct: 499 GRTGRAGAKGMAFTFF 514
>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
Length = 610
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 199/365 (54%), Gaps = 27/365 (7%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVE-ILRRS 81
+S +++AL G + P+Q A + +D+ A TG+GKTLAF +P+++ I++ +
Sbjct: 123 ISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFN 182
Query: 82 SPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEG 141
+ + ++++PTREL+ Q V + F + ++ ++ L GG + M+++ G
Sbjct: 183 AKHGRGKNPQCLVLAPTRELARQ---VEKEFRESAPSLDTICLYGGTPIGQQMRELNY-G 238
Query: 142 VNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTG 201
+++ +GTPGR+ D+M R L+ E++ ++LDEAD++L +GF + + I+ +LP R++
Sbjct: 239 IDVAVGTPGRIIDLMKR-GALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSM 297
Query: 202 LFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEA 261
+FSAT + L K L NP+ +++ ++ + K G+ + + ++
Sbjct: 298 MFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQ-------------KLADGITMYSIAADS 344
Query: 262 DKKPSQLVDFLVKNRSK--KIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTV 319
+ S ++ LVK K K I++ T D + K + LHG + Q
Sbjct: 345 YGRAS-IIGPLVKEHGKGGKCIVFTQTKRDADRLA-----FGLAKSYKCEALHGDISQAQ 398
Query: 320 REKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQG 379
RE+ LA F + IL+ TDVAARGLD+P VD ++ Y+ P + F+HR GRT R GK+G
Sbjct: 399 RERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKG 458
Query: 380 HAVVF 384
A++
Sbjct: 459 SAILI 463
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 187/383 (48%), Gaps = 42/383 (10%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
L+ +L+A+ +G+ +P+Q A IPL +DV A TGSGKT AFVLP++ + R
Sbjct: 320 LTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLP 379
Query: 83 PKPKPHQVLG---IIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEE 139
P + ++ G ++++PTREL+ QI F L + +VGG ++ KI +
Sbjct: 380 PMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYL-GFRVTSIVGGQSIEEQGLKITQ 438
Query: 140 EGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPK--- 196
G I+I TPGRL D + R + + ++LDEADR++DMGF+ Q+ ++ +P
Sbjct: 439 -GCEIVIATPGRLIDCLERRYAV-LNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNL 496
Query: 197 --------------LRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQ 242
R T +FSAT VE LA+ LRNPV V + TA
Sbjct: 497 KPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTI----------GTA-- 544
Query: 243 LESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISV 302
KT + + + +K +L L + K I++ T D L
Sbjct: 545 ---GKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKA-- 599
Query: 303 LKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDP 362
G+ + LHG Q RE +L F + +L+ TDV RG+DIP V ++ YD P+
Sbjct: 600 --GYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHI 657
Query: 363 NVFIHRVGRTARLGKQGHAVVFL 385
++ HR+GRT R GK G A FL
Sbjct: 658 EMYTHRIGRTGRAGKSGVATSFL 680
>AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:19429083-19431617
REVERSE LENGTH=760
Length = 760
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 191/372 (51%), Gaps = 21/372 (5%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
S ++ A+ ++ T +Q +P++ S +DV A TGSGKT AFVLP++ +
Sbjct: 235 FSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQP 294
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGV 142
+ +G+I +PTREL+ QI+ A+ F S ++ + GG+ K+++ G
Sbjct: 295 ELQRDEGPIGVICAPTRELAHQIFLEAKKF-SKAYGLRVSAVYGGMSKHEQFKELKA-GC 352
Query: 143 NILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGL 202
I++ TPGRL D++ +M L L+LDEADR+ D+GF+ Q+ SI+ Q+ R+T L
Sbjct: 353 EIVVATPGRLIDML-KMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLL 411
Query: 203 FSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEAD 262
FSAT VE+LA+ L +P+RV V E AN+ T + + +A+
Sbjct: 412 FSATMPWKVEKLAREILSDPIRVTV-GEVGMANEDITQV------------VNVIPSDAE 458
Query: 263 KKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREK 322
K P L ++++ A VD L L F + LHG Q R +
Sbjct: 459 KLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQL----TLNSFKVAALHGDKDQASRME 514
Query: 323 ALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLG-KQGHA 381
L F S + +L+ TDVAARGLDI + +V YD +D ++ +HR+GRT R G + G A
Sbjct: 515 TLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVA 574
Query: 382 VVFLLPKEDSYV 393
+ +E +
Sbjct: 575 YTLVTQREARFA 586
>AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7285342-7288842
FORWARD LENGTH=1166
Length = 1166
Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 200/391 (51%), Gaps = 23/391 (5%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
L+ +L + ++ P+Q +P++ S +D A TGSGKTL FVLP++ ++
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 595
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGV 142
P +G++++PTREL QI+ + F S + I+ + + GG V + +++ G
Sbjct: 596 PVEAGDGPIGLVMAPTRELVQQIHSDIRKF-SKPLGIRCVPVYGGSGVAQQISELKR-GT 653
Query: 143 NILIGTPGRLHDIM--NRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRT 200
I++ TPGR+ DI+ + I + + + L++DEADR+ DMGF+ Q+T II + R+T
Sbjct: 654 EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQT 713
Query: 201 GLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECE 260
LFSAT VE LA+ L PV ++V + D QL + S + LE
Sbjct: 714 VLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKD---ITQLVEVRPESDRFLRLLEL- 769
Query: 261 ADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVR 320
L ++ K KI+++ + D L + + + LHG QT R
Sbjct: 770 -------LGEWSEKG---KILVFVQSQEKCD----ALYRDMIKSSYPCLSLHGGKDQTDR 815
Query: 321 EKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGH 380
E ++ F + +L+ T VAARGLD+ ++ +V +D P ++HRVGRT R G++G
Sbjct: 816 ESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGC 875
Query: 381 AVVFLLPKEDSYVEFLRIRRVPLQEIRCSDD 411
AV F+ + Y L ++ + L E DD
Sbjct: 876 AVTFISEDDAKYAPDL-VKALELSEQPVPDD 905
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 126/408 (30%), Positives = 205/408 (50%), Gaps = 33/408 (8%)
Query: 27 VLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPK 86
+L+ + +GF TP+QA + P+ +D+ A TGSGKTL +++P L+R +
Sbjct: 169 LLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR 228
Query: 87 PHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILI 146
+ +++SPTREL++QI A F + I L GG ++ +E G +I++
Sbjct: 229 MGPTI-LVLSPTRELATQIQEEAVKFGRS-SRISCTCLYGGAPKGPQLRDLER-GADIVV 285
Query: 147 GTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGLFSAT 206
TPGRL+DI+ M + +++ L+LDEADR+LDMGF+ Q+ I+ ++P R+T +++AT
Sbjct: 286 ATPGRLNDILE-MRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTAT 344
Query: 207 QTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLE-CEADKKP 265
+ V ++A L NP +V + +L ++K+ + HIE + E ++
Sbjct: 345 WPKGVRKIAADLLVNPAQVNI----------GNVDELVANKSIT-QHIEVVAPMEKQRRL 393
Query: 266 SQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALA 325
Q++ + K+II+ T D L + F +HG Q R+ L
Sbjct: 394 EQIL--RSQEPGSKVIIFCSTKRMCDQLTRNL-----TRQFGAAAIHGDKSQPERDNVLN 446
Query: 326 SFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFL 385
F S +L+ TDVAARGLD+ + +V YD P ++HR+GRT R G G A F
Sbjct: 447 QFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
Query: 386 LPKEDSYVEFLRIRRVPLQEIRCSDDAPD-VVPQIRSAAKKDRDIMEK 432
++ + L I+ + A V PQIR A + M K
Sbjct: 507 GDQDSKHASDL---------IKILEGANQRVPPQIREMATRGGGGMNK 545
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 126/408 (30%), Positives = 205/408 (50%), Gaps = 33/408 (8%)
Query: 27 VLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPK 86
+L+ + +GF TP+QA + P+ +D+ A TGSGKTL +++P L+R +
Sbjct: 169 LLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR 228
Query: 87 PHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILI 146
+ +++SPTREL++QI A F + I L GG ++ +E G +I++
Sbjct: 229 MGPTI-LVLSPTRELATQIQEEAVKFGRS-SRISCTCLYGGAPKGPQLRDLER-GADIVV 285
Query: 147 GTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGLFSAT 206
TPGRL+DI+ M + +++ L+LDEADR+LDMGF+ Q+ I+ ++P R+T +++AT
Sbjct: 286 ATPGRLNDILE-MRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTAT 344
Query: 207 QTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLE-CEADKKP 265
+ V ++A L NP +V + +L ++K+ + HIE + E ++
Sbjct: 345 WPKGVRKIAADLLVNPAQVNI----------GNVDELVANKSIT-QHIEVVAPMEKQRRL 393
Query: 266 SQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALA 325
Q++ + K+II+ T D L + F +HG Q R+ L
Sbjct: 394 EQIL--RSQEPGSKVIIFCSTKRMCDQLTRNL-----TRQFGAAAIHGDKSQPERDNVLN 446
Query: 326 SFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFL 385
F S +L+ TDVAARGLD+ + +V YD P ++HR+GRT R G G A F
Sbjct: 447 QFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
Query: 386 LPKEDSYVEFLRIRRVPLQEIRCSDDAPD-VVPQIRSAAKKDRDIMEK 432
++ + L I+ + A V PQIR A + M K
Sbjct: 507 GDQDSKHASDL---------IKILEGANQRVPPQIREMATRGGGGMNK 545
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 126/408 (30%), Positives = 205/408 (50%), Gaps = 33/408 (8%)
Query: 27 VLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPK 86
+L+ + +GF TP+QA + P+ +D+ A TGSGKTL +++P L+R +
Sbjct: 169 LLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR 228
Query: 87 PHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILI 146
+ +++SPTREL++QI A F + I L GG ++ +E G +I++
Sbjct: 229 MGPTI-LVLSPTRELATQIQEEAVKFGRS-SRISCTCLYGGAPKGPQLRDLER-GADIVV 285
Query: 147 GTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGLFSAT 206
TPGRL+DI+ M + +++ L+LDEADR+LDMGF+ Q+ I+ ++P R+T +++AT
Sbjct: 286 ATPGRLNDILE-MRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTAT 344
Query: 207 QTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLE-CEADKKP 265
+ V ++A L NP +V + +L ++K+ + HIE + E ++
Sbjct: 345 WPKGVRKIAADLLVNPAQVNI----------GNVDELVANKSIT-QHIEVVAPMEKQRRL 393
Query: 266 SQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALA 325
Q++ + K+II+ T D L + F +HG Q R+ L
Sbjct: 394 EQIL--RSQEPGSKVIIFCSTKRMCDQLTRNL-----TRQFGAAAIHGDKSQPERDNVLN 446
Query: 326 SFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFL 385
F S +L+ TDVAARGLD+ + +V YD P ++HR+GRT R G G A F
Sbjct: 447 QFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
Query: 386 LPKEDSYVEFLRIRRVPLQEIRCSDDAPD-VVPQIRSAAKKDRDIMEK 432
++ + L I+ + A V PQIR A + M K
Sbjct: 507 GDQDSKHASDL---------IKILEGANQRVPPQIREMATRGGGGMNK 545
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=618
Length = 618
Score = 178 bits (452), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 126/408 (30%), Positives = 205/408 (50%), Gaps = 33/408 (8%)
Query: 27 VLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPK 86
+L+ + +GF TP+QA + P+ +D+ A TGSGKTL +++P L+R +
Sbjct: 169 LLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR 228
Query: 87 PHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILI 146
+ +++SPTREL++QI A F + I L GG ++ +E G +I++
Sbjct: 229 MGPTI-LVLSPTRELATQIQEEAVKFGRS-SRISCTCLYGGAPKGPQLRDLER-GADIVV 285
Query: 147 GTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGLFSAT 206
TPGRL+DI+ M + +++ L+LDEADR+LDMGF+ Q+ I+ ++P R+T +++AT
Sbjct: 286 ATPGRLNDILE-MRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTAT 344
Query: 207 QTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLE-CEADKKP 265
+ V ++A L NP +V + +L ++K+ + HIE + E ++
Sbjct: 345 WPKGVRKIAADLLVNPAQVNI----------GNVDELVANKSIT-QHIEVVAPMEKQRRL 393
Query: 266 SQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALA 325
Q++ + K+II+ T D L + F +HG Q R+ L
Sbjct: 394 EQIL--RSQEPGSKVIIFCSTKRMCDQLTRNL-----TRQFGAAAIHGDKSQPERDNVLN 446
Query: 326 SFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFL 385
F S +L+ TDVAARGLD+ + +V YD P ++HR+GRT R G G A F
Sbjct: 447 QFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
Query: 386 LPKEDSYVEFLRIRRVPLQEIRCSDDAPD-VVPQIRSAAKKDRDIMEK 432
++ + L I+ + A V PQIR A + M K
Sbjct: 507 GDQDSKHASDL---------IKILEGANQRVPPQIREMATRGGGGMNK 545
>AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7286356-7288842
FORWARD LENGTH=828
Length = 828
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 200/391 (51%), Gaps = 23/391 (5%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
L+ +L + ++ P+Q +P++ S +D A TGSGKTL FVLP++ ++
Sbjct: 198 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 257
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGV 142
P +G++++PTREL QI+ + F S + I+ + + GG V + +++ G
Sbjct: 258 PVEAGDGPIGLVMAPTRELVQQIHSDIRKF-SKPLGIRCVPVYGGSGVAQQISELKR-GT 315
Query: 143 NILIGTPGRLHDIM--NRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRT 200
I++ TPGR+ DI+ + I + + + L++DEADR+ DMGF+ Q+T II + R+T
Sbjct: 316 EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQT 375
Query: 201 GLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECE 260
LFSAT VE LA+ L PV ++V + D QL + S + LE
Sbjct: 376 VLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKD---ITQLVEVRPESDRFLRLLEL- 431
Query: 261 ADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVR 320
L ++ K KI+++ + D L + + + LHG QT R
Sbjct: 432 -------LGEWSEKG---KILVFVQSQEKCD----ALYRDMIKSSYPCLSLHGGKDQTDR 477
Query: 321 EKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGH 380
E ++ F + +L+ T VAARGLD+ ++ +V +D P ++HRVGRT R G++G
Sbjct: 478 ESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGC 537
Query: 381 AVVFLLPKEDSYVEFLRIRRVPLQEIRCSDD 411
AV F+ + Y L ++ + L E DD
Sbjct: 538 AVTFISEDDAKYAPDL-VKALELSEQPVPDD 567
>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=748
Length = 748
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/370 (31%), Positives = 191/370 (51%), Gaps = 45/370 (12%)
Query: 29 QALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEIL---------- 78
++L G P+Q A + +D+ A TG+GKTLAF +P+++ L
Sbjct: 115 ESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAF 174
Query: 79 RRSSPKPKPHQVLGIIISPTRELSSQI---YHVAQPFISTLVNIKSMLLVGGVDVKADMK 135
RRS PK ++++PTREL+ Q+ + P++ST+ + GGV
Sbjct: 175 RRSGRLPK-----FLVLAPTRELAKQVEKEIKESAPYLSTVC------VYGGVSYTIQQS 223
Query: 136 KIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLP 195
+ GV++++GTPGR+ D++ L E+E L+LDEAD++L +GF++ + SI+ LP
Sbjct: 224 ALTR-GVDVVVGTPGRIIDLIEGRS-LKLGEVEYLVLDEADQMLAVGFEEAVESILENLP 281
Query: 196 KLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIE 255
R++ LFSAT V++LA+ L NP+ +++ + + K G+ +
Sbjct: 282 TKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGD-------------QDEKLAEGIKLY 328
Query: 256 YLECEADKKPSQLVDFL-VKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGK 314
+ + K + L D + V + K I++ T D L + + LHG
Sbjct: 329 AIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN-----SIATEALHGD 383
Query: 315 MKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTAR 374
+ Q RE+ L +F +L+ TDVA+RGLDIP VD ++ Y+ P DP F+HR GRT R
Sbjct: 384 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 443
Query: 375 LGKQGHAVVF 384
GK+G A++
Sbjct: 444 AGKEGSAILM 453
>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=747
Length = 747
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/370 (31%), Positives = 191/370 (51%), Gaps = 45/370 (12%)
Query: 29 QALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEIL---------- 78
++L G P+Q A + +D+ A TG+GKTLAF +P+++ L
Sbjct: 115 ESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAF 174
Query: 79 RRSSPKPKPHQVLGIIISPTRELSSQI---YHVAQPFISTLVNIKSMLLVGGVDVKADMK 135
RRS PK ++++PTREL+ Q+ + P++ST+ + GGV
Sbjct: 175 RRSGRLPK-----FLVLAPTRELAKQVEKEIKESAPYLSTVC------VYGGVSYTIQQS 223
Query: 136 KIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLP 195
+ GV++++GTPGR+ D++ L E+E L+LDEAD++L +GF++ + SI+ LP
Sbjct: 224 ALTR-GVDVVVGTPGRIIDLIEGRS-LKLGEVEYLVLDEADQMLAVGFEEAVESILENLP 281
Query: 196 KLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIE 255
R++ LFSAT V++LA+ L NP+ +++ + + K G+ +
Sbjct: 282 TKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGD-------------QDEKLAEGIKLY 328
Query: 256 YLECEADKKPSQLVDFL-VKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGK 314
+ + K + L D + V + K I++ T D L + + LHG
Sbjct: 329 AIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN-----SIATEALHGD 383
Query: 315 MKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTAR 374
+ Q RE+ L +F +L+ TDVA+RGLDIP VD ++ Y+ P DP F+HR GRT R
Sbjct: 384 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 443
Query: 375 LGKQGHAVVF 384
GK+G A++
Sbjct: 444 AGKEGSAILM 453
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 209/413 (50%), Gaps = 35/413 (8%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
L +L+ + +GF +P+QA + P+ +D+ A TGSGKTL +++P L+R
Sbjct: 168 LPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIH 227
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGV 142
+ + +++SPTREL++QI A F + I L GG +K+IE GV
Sbjct: 228 NDSRMGPTI-LVLSPTRELATQIQVEALKFGKS-SKISCACLYGGAPKGPQLKEIER-GV 284
Query: 143 NILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGL 202
+I++ TPGRL+DI+ M + ++ L+LDEADR+LDMGF+ Q+ I+ ++P R+T +
Sbjct: 285 DIVVATPGRLNDIL-EMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLM 343
Query: 203 FSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEAD 262
++AT + V ++A L NP +V + +L ++K+ + + +E A
Sbjct: 344 YTATWPKEVRKIAADLLVNPAQVNI----------GNVDELVANKSIT----QTIEVLAP 389
Query: 263 KKPSQLVDFLVKNR--SKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVR 320
+ ++ +++++ KIII+ T D L + F +HG Q R
Sbjct: 390 MEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNL-----TRTFGAAAIHGDKSQAER 444
Query: 321 EKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGH 380
+ L F S +L+ TDVAARGLD+ + +V YD P ++HR+GRT R G G
Sbjct: 445 DDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGL 504
Query: 381 AVVFLLPKEDSYV-EFLRIRRVPLQEIRCSDDAPDVVPQIRSAAKKDRDIMEK 432
A F ++ + + ++I Q+ V PQ+R A + M K
Sbjct: 505 AYTFFGDQDAKHASDLIKILEGANQK---------VPPQVREMATRGGGGMNK 548
>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288618 REVERSE LENGTH=655
Length = 655
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 188/357 (52%), Gaps = 46/357 (12%)
Query: 42 VQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEIL----------RRSSPKPKPHQVL 91
V+A +P L +D+ A TG+GKTLAF +P+++ L RRS PK
Sbjct: 36 VRAVLVPALQG-RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKF---- 90
Query: 92 GIIISPTRELSSQI---YHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILIGT 148
++++PTREL+ Q+ + P++ST+ + GGV + GV++++GT
Sbjct: 91 -LVLAPTRELAKQVEKEIKESAPYLSTVC------VYGGVSYTIQQSALTR-GVDVVVGT 142
Query: 149 PGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGLFSATQT 208
PGR+ D++ L E+E L+LDEAD++L +GF++ + SI+ LP R++ LFSAT
Sbjct: 143 PGRIIDLIEGRS-LKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMP 201
Query: 209 EAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEADKKPSQL 268
V++LA+ L NP+ +++ + + K G+ + + + K + L
Sbjct: 202 TWVKKLARKYLDNPLNIDLVGD-------------QDEKLAEGIKLYAIATTSTSKRTIL 248
Query: 269 VDFL-VKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALASF 327
D + V + K I++ T D L + + LHG + Q RE+ L +F
Sbjct: 249 SDLITVYAKGGKTIVFTQTKRDADEVSLALSN-----SIATEALHGDISQHQRERTLNAF 303
Query: 328 TSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVF 384
+L+ TDVA+RGLDIP VD ++ Y+ P DP F+HR GRT R GK+G A++
Sbjct: 304 RQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILM 360
>AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=712
Length = 712
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 204/402 (50%), Gaps = 35/402 (8%)
Query: 34 SGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPKPHQVLGI 93
+GF +P+QA + P+ +D+ A TGSGKTL +++P L+R + + +
Sbjct: 247 AGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTI-L 305
Query: 94 IISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLH 153
++SPTREL++QI A F + I L GG +K+IE GV+I++ TPGRL+
Sbjct: 306 VLSPTRELATQIQVEALKFGKS-SKISCACLYGGAPKGPQLKEIER-GVDIVVATPGRLN 363
Query: 154 DIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGLFSATQTEAVEE 213
DI+ M + ++ L+LDEADR+LDMGF+ Q+ I+ ++P R+T +++AT + V +
Sbjct: 364 DIL-EMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRK 422
Query: 214 LAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEADKKPSQLVDFLV 273
+A L NP +V + +L ++K+ + + +E A + ++ ++
Sbjct: 423 IAADLLVNPAQVNI----------GNVDELVANKSIT----QTIEVLAPMEKHSRLEQIL 468
Query: 274 KNR--SKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALASFTSLS 331
+++ KIII+ T D L + F +HG Q R+ L F S
Sbjct: 469 RSQEPGSKIIIFCSTKRMCDQLARNL-----TRTFGAAAIHGDKSQAERDDVLNQFRSGR 523
Query: 332 NGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEDS 391
+L+ TDVAARGLD+ + +V YD P ++HR+GRT R G G A F ++
Sbjct: 524 TPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAK 583
Query: 392 YV-EFLRIRRVPLQEIRCSDDAPDVVPQIRSAAKKDRDIMEK 432
+ + ++I Q+ V PQ+R A + M K
Sbjct: 584 HASDLIKILEGANQK---------VPPQVREMATRGGGGMNK 616
>AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:23463284-23466451 REVERSE LENGTH=798
Length = 798
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 140/456 (30%), Positives = 225/456 (49%), Gaps = 28/456 (6%)
Query: 1 MDSSEFPNKALTST-RFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVD 59
M+ + P+ ++ S RF E +S L+AL+ SG T VQ AT+ KD V
Sbjct: 314 MEEKQEPHDSIYSAKRFDE--SCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVK 371
Query: 60 AATGSGKTLAFVLPLVEILRRSSPKPKPHQ----VLGIIISPTRELSSQIYHVAQPFIST 115
A TG+GK++AF+LP +E + ++ K + +I+ PTREL+SQI + +
Sbjct: 372 AKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKF 431
Query: 116 LVNIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHD-IMNRMDILD-FKELEILILD 173
I L+GG K D +++E E ILI TPGRL D I N+ + L++ I+D
Sbjct: 432 HDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVD 491
Query: 174 EADRLLDMGFQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKR 233
EAD LLD+GF++ + II LP+ R++ LFSAT + V +++ L+ R +T
Sbjct: 492 EADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLK---RDHSYIDTIG 548
Query: 234 ANDPATAKQLESS--KTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVD 291
T ++ S P H + P L + + KII++ T
Sbjct: 549 LGCVETHDKVRQSCIVAPHESHFHLV-------PHLLKEHINNTPDYKIIVFCSTGMVTS 601
Query: 292 FWGTVLPHISVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVD 351
T+L + + ++ +H + Q R + F + IL+ +DV+ARG++ P V
Sbjct: 602 LMYTLLREMKL----NVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVT 657
Query: 352 CIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEDSYVEFLRIRRVPLQEIRCSDD 411
++Q P D +IHR+GRT R GK G ++ + P E +++ L + +PL+ I D
Sbjct: 658 LVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERYFLDEL--KDLPLEPIPAPDL 715
Query: 412 APDVVPQI-RSAAKKDRDIMEKGVKAFVSYIRAYKE 446
V Q+ +S AK D I E A++ Y + +E
Sbjct: 716 DSIVKHQVDQSMAKIDTSIKEAAYHAWLGYYNSVRE 751
>AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:3576483-3580396 FORWARD LENGTH=845
Length = 845
Score = 172 bits (435), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 142/456 (31%), Positives = 227/456 (49%), Gaps = 28/456 (6%)
Query: 1 MDSSEFPNKALTST-RFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVD 59
M+ + P+ ++ S RF E +S L+AL+ SG T VQ AT+ KD V
Sbjct: 361 MEEKQEPHDSIYSAKRFDE--SCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVK 418
Query: 60 AATGSGKTLAFVLPLVE-ILRRSSPKPKPHQVLGI---IISPTRELSSQIYHVAQPFIST 115
A TG+GK++AF+LP +E +L+ + H+V I I+ PTREL+SQI + +
Sbjct: 419 AKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKN 478
Query: 116 LVNIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHD-IMNRMDILD-FKELEILILD 173
I L+GG + D +++E E ILI TPGRL D I N+ + L++ I+D
Sbjct: 479 HDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVD 538
Query: 174 EADRLLDMGFQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKR 233
EAD LLD+GF++ + II LP+ R++ LFSAT + V +++ L+ R +T
Sbjct: 539 EADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLK---RDHSYIDTIG 595
Query: 234 ANDPATAKQLESS--KTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVD 291
T +++ S P H + P L + + KII++ T
Sbjct: 596 LGCVETHDKVKQSCIVAPHESHFHLV-------PHLLKEHINNMPDYKIIVFCSTGMVTS 648
Query: 292 FWGTVLPHISVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVD 351
T+L + + ++ +H + Q R F + IL+ +DV+ARG++ P V
Sbjct: 649 LMYTLLREMKL----NVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVT 704
Query: 352 CIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEDSYVEFLRIRRVPLQEIRCSDD 411
++Q P D +IHR+GRT R GK G ++ + P E +++ L + +PL+ I D
Sbjct: 705 LVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDEL--KDLPLEPIPAPDL 762
Query: 412 APDVVPQI-RSAAKKDRDIMEKGVKAFVSYIRAYKE 446
V Q+ +S AK D I E A++ Y + +E
Sbjct: 763 DSRVKHQVDQSMAKIDTSIKEAAYHAWLGYYNSVRE 798
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/360 (31%), Positives = 189/360 (52%), Gaps = 22/360 (6%)
Query: 27 VLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPK 86
VL+ + +GF TP+Q+ P+ +D+ A TGSGKTL+++LP + +
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH 169
Query: 87 PHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILI 146
+ ++++PTREL+ QI A F S+ IK+ + GGV ++ +++ GV I+I
Sbjct: 170 GDGPIVLVLAPTRELAVQIQQEASKFGSS-SKIKTTCIYGGVPKGPQVRDLQK-GVEIVI 227
Query: 147 GTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGLFSAT 206
TPGRL D+M + + + + L+LDEADR+LDMGF Q+ I++ + R+T +SAT
Sbjct: 228 ATPGRLIDMMESNNT-NLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSAT 286
Query: 207 QTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEADKKPS 266
+ VE+L+K L NP +V + + +AN +Q+ + S +K +
Sbjct: 287 WPKEVEQLSKKFLYNPYKVIIGSSDLKAN--RAIRQIVDVISES------------QKYN 332
Query: 267 QLVDFLVK-NRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALA 325
+LV L +I+++ T D + + G+ + +HG Q R+ L+
Sbjct: 333 KLVKLLEDIMDGSRILVFLDTKKGCD----QITRQLRMDGWPALSIHGDKSQAERDWVLS 388
Query: 326 SFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFL 385
F S + I+ TDVAARGLD+ V ++ YD P ++HR+GRT R G +G A F
Sbjct: 389 EFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 448
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 126/381 (33%), Positives = 205/381 (53%), Gaps = 35/381 (9%)
Query: 16 FSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLP-L 74
F+E N P E VL F+ +P+Q+ T P L +D+ A TGSGKTLAF +P +
Sbjct: 118 FAESNLP--ENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAI 173
Query: 75 VEILRRS------SPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGV 128
+ +L+++ S K P +++SPTREL+ QI V + +KS+ + GG
Sbjct: 174 MHVLKKNKKIGGGSKKVNP---TCLVLSPTRELAVQISDVLRE-AGEPCGLKSICVYGGS 229
Query: 129 DVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLT 188
+ I GV+I+IGTPGRL D++ ++L ++ ++LDEADR+LDMGF++ +
Sbjct: 230 SKGPQISAIRS-GVDIVIGTPGRLRDLIES-NVLRLSDVSFVVLDEADRMLDMGFEEPVR 287
Query: 189 SIITQLPKLRRTGLFSATQTEAVEELAKAGLR-NPVRVEVRAETKRANDPATAKQLESSK 247
I++ K+R+ +FSAT V +LA+ + NP++V + + AN Q+
Sbjct: 288 FILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVM--QI---- 341
Query: 248 TPSGLHIEYLECEA-DKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGF 306
IE L+ A D++ L++ K++ +++++ A L +G+
Sbjct: 342 ------IEVLDERARDQRLIALLEKYHKSQKNRVLVF----ALYKVEAERLERFLQQRGW 391
Query: 307 SLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFI 366
+ +HG Q+ R ++L+ F S +L+ TDVAARGLDIP V+ ++ Y P ++
Sbjct: 392 KAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYV 451
Query: 367 HRVGRTARLGKQGHAVVFLLP 387
HR+GRT R GK+G A F P
Sbjct: 452 HRIGRTGRAGKKGVAHTFFTP 472
>AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2949152-2952205
REVERSE LENGTH=989
Length = 989
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 197/405 (48%), Gaps = 52/405 (12%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
L+ +L L ++ P+QA +P++ S +D A TGSGKTL FVLP++ ++
Sbjct: 403 LTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 462
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGV 142
P +G++++PTREL QIY + F S + I + + GG V + ++ + G
Sbjct: 463 PVEAGDGPIGLVMAPTRELVQQIYSDIRKF-SKALGIICVPVYGGSGVAQQISEL-KRGT 520
Query: 143 NILIGTPGRLHDIM--NRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRT 200
I++ TPGR+ DI+ + I + + + L++DEADR+ DMGF+ Q+T I+ + R+T
Sbjct: 521 EIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 580
Query: 201 GLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECE 260
LFSAT VE LA+ L PV ++V + D QL + S
Sbjct: 581 VLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKD---ITQLVEIRPES---------- 627
Query: 261 ADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVR 320
++ S+L++ L + K ++ F+ +
Sbjct: 628 --ERFSRLLELLGEWYEKGKVLVFVRS--------------------------------Q 653
Query: 321 EKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGH 380
EK+++ F S +L+ T VAARGLD+ ++ +V +D P ++HRVGRT R G++G
Sbjct: 654 EKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGC 713
Query: 381 AVVFLLPKEDSYVEFLRIRRVPLQEIRCSDDAPDVVPQIRSAAKK 425
AV F+ + Y L ++ + L E DD V + K+
Sbjct: 714 AVTFISEDDAKYAPDL-VKALELSEQPVPDDVKAVAEGFMAKVKQ 757
>AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:19047960-19049967 FORWARD LENGTH=392
Length = 392
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/365 (30%), Positives = 194/365 (53%), Gaps = 30/365 (8%)
Query: 23 LSEPVLQALTDSGFDFCTPVQA-ATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRS 81
+++ VL+ + D G+ + +Q A +P+L +DV A +G+GKT + + +I+ S
Sbjct: 29 MNDKVLRGVYDYGYKKPSEIQQRALVPILKG-RDVIAQAQSGTGKTSMIAISVCQIVNIS 87
Query: 82 SPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEG 141
S K QVL ++SP+REL+SQ Q I NI++ +GG + D+KK+E G
Sbjct: 88 SRKV---QVL--VLSPSRELASQTEKTIQA-IGAHTNIQAHACIGGKSIGEDIKKLER-G 140
Query: 142 VNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTG 201
V+ + GTPGR++D++ R L K +++L+LDE+D +L G + Q+ + LP +
Sbjct: 141 VHAVSGTPGRVYDMIKRGS-LQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVC 199
Query: 202 LFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEA 261
L SAT + + E+ + + +PVR+ V+ + T G+ Y++ +
Sbjct: 200 LISATLPQEILEMTEKFMTDPVRILVKPD---------------ELTLEGIKQYYVDVDK 244
Query: 262 DK-KPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVR 320
++ K L D + + II+ T VD W T S F + +HG +Q R
Sbjct: 245 EEWKFDTLCDLYGRLTINQAIIFCNTRQKVD-WLTEKMRSS---NFIVSSMHGDKRQKER 300
Query: 321 EKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGH 380
+ + F S + +L+ +DV ARG+D+ V ++ YD P +P ++IHR+GR R G++G
Sbjct: 301 DDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGV 360
Query: 381 AVVFL 385
A+ F+
Sbjct: 361 AINFV 365
>AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 200/390 (51%), Gaps = 30/390 (7%)
Query: 4 SEFPNKALTSTRFSELNPP-LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAAT 62
+ + + +T+T+ +E L +L + + GF+ +P+Q +IP+ + +D+ A
Sbjct: 118 TRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKN 177
Query: 63 GSGKTLAFVLPLVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSM 122
G+GKT AF +P++E + + + + + +II PTREL+ Q V + + + I+ M
Sbjct: 178 GTGKTAAFCIPVLEKIDQDN-----NVIQAVIIVPTRELALQTSQVCKE-LGKHLKIQVM 231
Query: 123 LLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMG 182
+ GG +K D+ ++ + V++L+GTPGR+ D + + + K+ +L++DEAD+LL
Sbjct: 232 VTTGGTSLKDDIMRLYQP-VHLLVGTPGRILD-LTKKGVCVLKDCSVLVMDEADKLLSQE 289
Query: 183 FQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQ 242
FQ + +I+ LP+ R+ +FSAT V++ L NP + + E
Sbjct: 290 FQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDEL----------- 338
Query: 243 LESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISV 302
T G+ Y E +K L K + + II+ C V+ + I+
Sbjct: 339 -----TLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIF---CNSVNRVELLAKKITE 390
Query: 303 LKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDP 362
L G+S +H KM Q R + F + + L+CTD+ RG+DI V+ ++ +D P++
Sbjct: 391 L-GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNA 449
Query: 363 NVFIHRVGRTARLGKQGHAVVFLLPKEDSY 392
++HRVGR+ R G G AV L+ ED +
Sbjct: 450 ETYLHRVGRSGRFGHLGLAVN-LITYEDRF 478
>AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 200/390 (51%), Gaps = 30/390 (7%)
Query: 4 SEFPNKALTSTRFSELNPP-LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAAT 62
+ + + +T+T+ +E L +L + + GF+ +P+Q +IP+ + +D+ A
Sbjct: 118 TRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKN 177
Query: 63 GSGKTLAFVLPLVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSM 122
G+GKT AF +P++E + + + + + +II PTREL+ Q V + + + I+ M
Sbjct: 178 GTGKTAAFCIPVLEKIDQDN-----NVIQAVIIVPTRELALQTSQVCKE-LGKHLKIQVM 231
Query: 123 LLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMG 182
+ GG +K D+ ++ + V++L+GTPGR+ D + + + K+ +L++DEAD+LL
Sbjct: 232 VTTGGTSLKDDIMRLYQP-VHLLVGTPGRILD-LTKKGVCVLKDCSVLVMDEADKLLSQE 289
Query: 183 FQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQ 242
FQ + +I+ LP+ R+ +FSAT V++ L NP + + E
Sbjct: 290 FQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDEL----------- 338
Query: 243 LESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISV 302
T G+ Y E +K L K + + II+ C V+ + I+
Sbjct: 339 -----TLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIF---CNSVNRVELLAKKITE 390
Query: 303 LKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDP 362
L G+S +H KM Q R + F + + L+CTD+ RG+DI V+ ++ +D P++
Sbjct: 391 L-GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNA 449
Query: 363 NVFIHRVGRTARLGKQGHAVVFLLPKEDSY 392
++HRVGR+ R G G AV L+ ED +
Sbjct: 450 ETYLHRVGRSGRFGHLGLAVN-LITYEDRF 478
>AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 114/390 (29%), Positives = 196/390 (50%), Gaps = 30/390 (7%)
Query: 4 SEFPNKALTSTRFSELNPP-LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAAT 62
+ + +T+T+ +E L +L+ + + GF+ +P+Q +IP+ + D+ A
Sbjct: 111 TRYQTADVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKN 170
Query: 63 GSGKTLAFVLPLVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSM 122
G+GKT AF +P++E + P + + +I+ PTREL+ Q V + +S +NI+ M
Sbjct: 171 GTGKTGAFCIPVLEKI-----DPNNNVIQAMILVPTRELALQTSQVCKE-LSKYLNIQVM 224
Query: 123 LLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMG 182
+ GG ++ D+ ++ + V++L+GTPGR+ D+ + + K+ +L++DEAD+LL
Sbjct: 225 VTTGGTSLRDDIMRLHQP-VHLLVGTPGRILDLTKK-GVCVLKDCAMLVMDEADKLLSAE 282
Query: 183 FQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQ 242
FQ L +I LP+ R+ +FSAT V+ LR P +
Sbjct: 283 FQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVIN---------------- 326
Query: 243 LESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISV 302
L T G+ Y E +K L K + + II+ C V+ + I+
Sbjct: 327 LMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIF---CNSVNRVELLAKKITE 383
Query: 303 LKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDP 362
L G+S +H KM Q R + F + + L+CTD+ RG+DI V+ ++ +D P+
Sbjct: 384 L-GYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTS 442
Query: 363 NVFIHRVGRTARLGKQGHAVVFLLPKEDSY 392
++HRVGR+ R G G AV L+ ED +
Sbjct: 443 ESYLHRVGRSGRFGHLGLAVN-LVTYEDRF 471
>AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 114/390 (29%), Positives = 196/390 (50%), Gaps = 30/390 (7%)
Query: 4 SEFPNKALTSTRFSELNPP-LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAAT 62
+ + +T+T+ +E L +L+ + + GF+ +P+Q +IP+ + D+ A
Sbjct: 111 TRYQTADVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKN 170
Query: 63 GSGKTLAFVLPLVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSM 122
G+GKT AF +P++E + P + + +I+ PTREL+ Q V + +S +NI+ M
Sbjct: 171 GTGKTGAFCIPVLEKI-----DPNNNVIQAMILVPTRELALQTSQVCKE-LSKYLNIQVM 224
Query: 123 LLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMG 182
+ GG ++ D+ ++ + V++L+GTPGR+ D+ + + K+ +L++DEAD+LL
Sbjct: 225 VTTGGTSLRDDIMRLHQP-VHLLVGTPGRILDLTKK-GVCVLKDCAMLVMDEADKLLSAE 282
Query: 183 FQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQ 242
FQ L +I LP+ R+ +FSAT V+ LR P +
Sbjct: 283 FQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVIN---------------- 326
Query: 243 LESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISV 302
L T G+ Y E +K L K + + II+ C V+ + I+
Sbjct: 327 LMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIF---CNSVNRVELLAKKITE 383
Query: 303 LKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDP 362
L G+S +H KM Q R + F + + L+CTD+ RG+DI V+ ++ +D P+
Sbjct: 384 L-GYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTS 442
Query: 363 NVFIHRVGRTARLGKQGHAVVFLLPKEDSY 392
++HRVGR+ R G G AV L+ ED +
Sbjct: 443 ESYLHRVGRSGRFGHLGLAVN-LVTYEDRF 471
>AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843084-9845002
REVERSE LENGTH=614
Length = 614
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 182/362 (50%), Gaps = 47/362 (12%)
Query: 46 TIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPKPHQVLG---IIISPTRELS 102
TIPL +DV +ATGSGKT AFVLP++ + R P + +Q G +++ PTREL+
Sbjct: 232 TIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYALVMVPTRELA 291
Query: 103 SQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDIL 162
QI F S + K++ + G ++ K+ + G I+I TPGRL D + R ++
Sbjct: 292 HQIEEETVKF-SRYLGFKAVSITGWESIEKQALKLSQ-GCEIVIATPGRLLDCLERRYVV 349
Query: 163 DFKELEILILDEADRLLDMGFQKQLTSIITQLP-----------------KLRRTGLFSA 205
+ L+LDEADR++DM F+ Q++ ++ +P R T +FSA
Sbjct: 350 -LNQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKPEKEDEELEEKKIYRTTYMFSA 408
Query: 206 TQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEADK-- 263
T +VE LA+ LRNPV V + TK +Q+ +K E+DK
Sbjct: 409 TMLLSVERLARKFLRNPVVVTIGETTK-----FITQQVIMTK------------ESDKFS 451
Query: 264 KPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKA 323
+ +L+D L + K I++ T VD+ ++ ++ + + LH Q R+ +
Sbjct: 452 RLKKLIDDLGDD--KTAIVFVNTRNKVDY---IVKNLEKVGRCRVTTLHAGKSQEQRDYS 506
Query: 324 LASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVV 383
L F +L+ TDV RGLDI + ++ YD P +++ HR+GRT R GK G A
Sbjct: 507 LEEFKKKRFNVLVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATT 566
Query: 384 FL 385
FL
Sbjct: 567 FL 568
>AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
Length = 408
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 191/373 (51%), Gaps = 30/373 (8%)
Query: 14 TRFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLP 73
T F+++ + E VL+ + + GF+ + +Q + + +DV A +G+GKT L
Sbjct: 35 TSFNDMG--IKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALS 92
Query: 74 LVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKAD 133
+ +++ SS +V +I+SPTREL++Q Q I NI++ +GG V D
Sbjct: 93 VCQVVDTSS-----REVQALILSPTRELATQTEKTIQA-IGLHANIQAHACIGGNSVGED 146
Query: 134 MKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQ 193
++K+E GV+++ GTPGR+ D++ R L + +++LILDE+D +L GF+ Q+ +
Sbjct: 147 IRKLEH-GVHVVSGTPGRVCDMIKRRS-LRTRAIKLLILDESDEMLSRGFKDQIYDVYRY 204
Query: 194 LPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLH 253
LP + L SAT + E+ + PV++ V+ + T G+
Sbjct: 205 LPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRD---------------ELTLEGIK 249
Query: 254 IEYLECEADK-KPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLH 312
++ E ++ K L D + +I+ T VD+ + F++ +H
Sbjct: 250 QFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRS----HNFTVSSMH 305
Query: 313 GKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRT 372
G M Q R+ + F S + +L+ TDV ARG+D+ V ++ YD P + ++IHR+GR+
Sbjct: 306 GDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 365
Query: 373 ARLGKQGHAVVFL 385
R G++G A+ F+
Sbjct: 366 GRFGRKGVAINFV 378
>AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3553334-3556646 FORWARD LENGTH=427
Length = 427
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 185/375 (49%), Gaps = 31/375 (8%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
L +L+A+ DSGF+ + VQ IP DV A +G GKT FVL ++ +
Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI---- 108
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGV 142
+P P QV +++ TREL+ QI + F + L + K + GGV++K ++ E
Sbjct: 109 -EPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP 167
Query: 143 NILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLD-MGFQKQLTSIITQLPKLRRTG 201
+I++GTPGR+ + D L K + ILDE D++L+ + ++ + I P ++
Sbjct: 168 HIVVGTPGRVLALAREKD-LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 202 LFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGL---HIEYLE 258
+FSAT ++ + + K +++P+ + V E K T GL +I+ E
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL--------------TLHGLVQHYIKLSE 272
Query: 259 CEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQT 318
E ++K + L+D L N +++I+ + + L + V F I +H M Q
Sbjct: 273 MEKNRKLNDLLDALDFN---QVVIFVKSVS----RAAELNKLLVECNFPSICIHSGMSQE 325
Query: 319 VREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQ 378
R SF IL+ TD+ RG+DI V+ ++ YD P + ++HRVGR R G +
Sbjct: 326 ERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK 385
Query: 379 GHAVVFLLPKEDSYV 393
G A+ F+ DS V
Sbjct: 386 GLAITFVASASDSEV 400
>AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=427
Length = 427
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 185/375 (49%), Gaps = 31/375 (8%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
L +L+A+ DSGF+ + VQ IP DV A +G GKT FVL ++ +
Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI---- 108
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGV 142
+P P QV +++ TREL+ QI + F + L + K + GGV++K ++ E
Sbjct: 109 -EPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP 167
Query: 143 NILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLD-MGFQKQLTSIITQLPKLRRTG 201
+I++GTPGR+ + D L K + ILDE D++L+ + ++ + I P ++
Sbjct: 168 HIVVGTPGRVLALAREKD-LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 202 LFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGL---HIEYLE 258
+FSAT ++ + + K +++P+ + V E K T GL +I+ E
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL--------------TLHGLVQHYIKLSE 272
Query: 259 CEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQT 318
E ++K + L+D L N +++I+ + + L + V F I +H M Q
Sbjct: 273 MEKNRKLNDLLDALDFN---QVVIFVKSVS----RAAELNKLLVECNFPSICIHSGMSQE 325
Query: 319 VREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQ 378
R SF IL+ TD+ RG+DI V+ ++ YD P + ++HRVGR R G +
Sbjct: 326 ERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK 385
Query: 379 GHAVVFLLPKEDSYV 393
G A+ F+ DS V
Sbjct: 386 GLAITFVASASDSEV 400
>AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2980483-2983268
REVERSE LENGTH=541
Length = 541
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 187/375 (49%), Gaps = 37/375 (9%)
Query: 27 VLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPK 86
+L+ L + GF TP+Q IP+L S ++ A TGSGKT AF+ P++ L+R P
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKR----PS 207
Query: 87 PHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILI 146
+ +I+SP REL++Q + I N L+ + AD K+ ++LI
Sbjct: 208 TDGIRAVILSPARELAAQTAREGKKLIKG-SNFHIRLMTKPLVKTADFSKL---WCDVLI 263
Query: 147 GTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQL--PKLRRTGLFS 204
TP RL + I D ++E L+LDE+D+L + KQ+ ++ P + R+ LFS
Sbjct: 264 STPMRLKRAIKAKKI-DLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRS-LFS 321
Query: 205 ATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQ-LESSKTPSGLHIEYLECEADK 263
AT ++VEELA++ + + VRV + ++ T KQ L + + G + + A+
Sbjct: 322 ATLPDSVEELARSIMHDAVRVII---GRKNTASETVKQKLVFAGSEEGKLLALRQSFAES 378
Query: 264 -KPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREK 322
P L+ K R+K++ + C + V+ H + RE
Sbjct: 379 LNPPVLIFVQSKERAKEL---YDELKCENIRAGVI--------------HSDLPPGEREN 421
Query: 323 ALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAV 382
A+ F + +L+ TDV ARG+D G++C++ YD P + +IHR+GR+ R G+ G A+
Sbjct: 422 AVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAI 481
Query: 383 VFLLPKEDSYVEFLR 397
F ++ V FLR
Sbjct: 482 TFYTEQD---VPFLR 493
>AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:18859836-18862318 FORWARD LENGTH=528
Length = 528
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 111/390 (28%), Positives = 197/390 (50%), Gaps = 30/390 (7%)
Query: 4 SEFPNKALTSTRFSELNPP-LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAAT 62
+ + + +T+T+ +E L +L+ + + GF+ +P+Q +IP+ + D+ A
Sbjct: 141 NRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKN 200
Query: 63 GSGKTLAFVLPLVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSM 122
G+GKT AF +P +E + P+ + + +I+ PTREL+ Q V + +S + I+ M
Sbjct: 201 GTGKTGAFCIPTLEKI-----DPENNVIQAVILVPTRELALQTSQVCKE-LSKYLKIEVM 254
Query: 123 LLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMG 182
+ GG ++ D+ ++ + V++L+GTPGR+ D+ + + K+ +L++DEAD+LL +
Sbjct: 255 VTTGGTSLRDDIMRLYQP-VHLLVGTPGRILDLAKK-GVCVLKDCAMLVMDEADKLLSVE 312
Query: 183 FQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQ 242
FQ + +I LP+ R+ +FSAT V+ L+ P +
Sbjct: 313 FQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYII----------------N 356
Query: 243 LESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISV 302
L T G+ Y E +K L K + + II+ C V+ + I+
Sbjct: 357 LMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIF---CNSVNRVELLAKKITE 413
Query: 303 LKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDP 362
L G+S +H KM Q R + F + + L+CTD+ RG+DI V+ ++ +D P+
Sbjct: 414 L-GYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTS 472
Query: 363 NVFIHRVGRTARLGKQGHAVVFLLPKEDSY 392
++HRVGR+ R G G AV L+ ED +
Sbjct: 473 ESYLHRVGRSGRFGHLGLAVN-LVTYEDRF 501
>AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:27378040-27379593 REVERSE LENGTH=414
Length = 414
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 195/391 (49%), Gaps = 33/391 (8%)
Query: 18 ELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEI 77
EL P L L+ + GF+ + +Q I C DV A +G+GKT F +++
Sbjct: 47 ELQPDL----LRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 102
Query: 78 LRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKI 137
L S Q ++++PTREL+ QI V + + + +K+ VGG V+ D +++
Sbjct: 103 LDISLV-----QCQALVLAPTRELAQQIEKVMRA-LGDYLGVKAQACVGGTSVRED-QRV 155
Query: 138 EEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKL 197
+ GV++++GTPGR+ D++ R L +++ +LDEAD +L GF+ Q+ I LP
Sbjct: 156 LQSGVHVVVGTPGRVFDLLRRQS-LRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSK 214
Query: 198 RRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYL 257
+ G+FSAT E+ + + PVR+ V+ + T G+ Y+
Sbjct: 215 VQVGVFSATMPPEALEITRKFMNKPVRILVKRD---------------ELTLEGIKQFYV 259
Query: 258 ECEADK-KPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMK 316
+ ++ K L D + +I+ T VD+ + + ++ HG M
Sbjct: 260 NVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMD 315
Query: 317 QTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLG 376
Q R+ + F S S+ +L+ TD+ ARG+D+ V ++ +D P P ++HR+GR+ R G
Sbjct: 316 QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFG 375
Query: 377 KQGHAVVFLLPKEDSYV-EFLRIRRVPLQEI 406
++G A+ F+ +++ + + R V ++E+
Sbjct: 376 RKGVAINFMTSEDERMMADIQRFYNVVVEEL 406
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594128 REVERSE
LENGTH=412
Length = 412
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 182/364 (50%), Gaps = 28/364 (7%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
L E +L+ + GF+ + +Q I C DV A +G+GKT F +++ L S
Sbjct: 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSL 105
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGV 142
Q ++++PTREL+ QI V + + + +K VGG V+ D ++I + GV
Sbjct: 106 I-----QCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHACVGGTSVRED-QRILQAGV 158
Query: 143 NILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGL 202
++++GTPGR+ D++ R L +++ +LDEAD +L GF+ Q+ I LP + G+
Sbjct: 159 HVVVGTPGRVFDMLKRQS-LRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217
Query: 203 FSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEAD 262
FSAT E+ + + PVR+ V+ + T G+ Y+ E +
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRD---------------ELTLEGIKQFYVNVEKE 262
Query: 263 K-KPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVRE 321
+ K L D + +I+ T VD+ + + ++ HG M Q R+
Sbjct: 263 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRD 318
Query: 322 KALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHA 381
+ F S S+ +L+ TD+ ARG+D+ V ++ +D P P ++HR+GR+ R G++G A
Sbjct: 319 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVA 378
Query: 382 VVFL 385
+ F+
Sbjct: 379 INFV 382
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594094 REVERSE
LENGTH=402
Length = 402
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 182/364 (50%), Gaps = 28/364 (7%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
L E +L+ + GF+ + +Q I C DV A +G+GKT F +++ L S
Sbjct: 36 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSL 95
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGV 142
Q ++++PTREL+ QI V + + + +K VGG V+ D ++I + GV
Sbjct: 96 I-----QCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHACVGGTSVRED-QRILQAGV 148
Query: 143 NILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGL 202
++++GTPGR+ D++ R L +++ +LDEAD +L GF+ Q+ I LP + G+
Sbjct: 149 HVVVGTPGRVFDMLKRQS-LRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 207
Query: 203 FSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEAD 262
FSAT E+ + + PVR+ V+ + T G+ Y+ E +
Sbjct: 208 FSATMPPEALEITRKFMSKPVRILVKRD---------------ELTLEGIKQFYVNVEKE 252
Query: 263 K-KPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVRE 321
+ K L D + +I+ T VD+ + + ++ HG M Q R+
Sbjct: 253 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRD 308
Query: 322 KALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHA 381
+ F S S+ +L+ TD+ ARG+D+ V ++ +D P P ++HR+GR+ R G++G A
Sbjct: 309 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVA 368
Query: 382 VVFL 385
+ F+
Sbjct: 369 INFV 372
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592586-4594128 REVERSE
LENGTH=415
Length = 415
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/364 (29%), Positives = 182/364 (50%), Gaps = 28/364 (7%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
L E +L+ + GF+ + +Q I C DV A +G+GKT F +++ L S
Sbjct: 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSL 105
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGV 142
Q ++++PTREL+ QI V + + + +K VGG V+ D ++I + GV
Sbjct: 106 I-----QCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHACVGGTSVRED-QRILQAGV 158
Query: 143 NILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGL 202
++++GTPGR+ D++ R L +++ +LDEAD +L GF+ Q+ I LP + G+
Sbjct: 159 HVVVGTPGRVFDMLKRQS-LRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217
Query: 203 FSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEAD 262
FSAT E+ + + PVR+ V+ + T G+ Y+ E +
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRD---------------ELTLEGIKQFYVNVEKE 262
Query: 263 K-KPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVRE 321
+ K L D + +I+ T VD+ L + ++ HG M Q R+
Sbjct: 263 EWKLETLCDLYETLAITQSVIFVNTRRKVDW----LTDKMRSRDHTVSATHGDMDQNTRD 318
Query: 322 KALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHA 381
+ F S S+ +L+ TD+ ARG+D+ V ++ +D P P ++HR+GR+ R G++G A
Sbjct: 319 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVA 378
Query: 382 VVFL 385
+ F+
Sbjct: 379 INFV 382
>AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiation
factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407
Length = 407
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 183/373 (49%), Gaps = 28/373 (7%)
Query: 14 TRFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLP 73
T + +++ LQ GF+ + +Q I C DV A +G+GKT F
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG 91
Query: 74 LVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKAD 133
+++ L S Q ++++PTREL+ QI V + + + +K VGG V+ D
Sbjct: 92 VLQQLDFSLI-----QCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHACVGGTSVRED 145
Query: 134 MKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQ 193
++I + GV++++GTPGR+ D++ R L +++ +LDEAD +L GF+ Q+ I
Sbjct: 146 -QRILQAGVHVVVGTPGRVFDMLKRQS-LRADNIKMFVLDEADEMLSRGFKDQIYDIFQL 203
Query: 194 LPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLH 253
LP + G+FSAT E+ + + PVR+ V+ + T G+
Sbjct: 204 LPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD---------------ELTLEGIK 248
Query: 254 IEYLECEADK-KPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLH 312
Y+ E ++ K L D + +I+ T VD+ + + ++ H
Sbjct: 249 QFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATH 304
Query: 313 GKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRT 372
G M Q R+ + F S S+ +L+ TD+ ARG+D+ V ++ +D P P ++HR+GR+
Sbjct: 305 GDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 364
Query: 373 ARLGKQGHAVVFL 385
R G++G A+ F+
Sbjct: 365 GRFGRKGVAINFV 377
>AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=412
Length = 412
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 180/364 (49%), Gaps = 28/364 (7%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
L E +L+ + GF+ + +Q I C DV A +G+GKT F +++ L +
Sbjct: 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYAL 105
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGV 142
Q ++++PTREL+ QI V + + +K VGG V+ D ++I + GV
Sbjct: 106 L-----QCQALVLAPTRELAQQIEKVMRA-LGDYQGVKVHACVGGTSVRED-QRILQAGV 158
Query: 143 NILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGL 202
++++GTPGR+ D++ R L +++ +LDEAD +L GF+ Q+ I LP + G+
Sbjct: 159 HVVVGTPGRVFDMLRRQS-LRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217
Query: 203 FSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEA- 261
FSAT E+ + + PVR+ V+ + T G+ Y+ E
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRD---------------ELTLEGIKQFYVNVEKE 262
Query: 262 DKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVRE 321
D K L D + +I+ T VD+ + + ++ HG M Q R+
Sbjct: 263 DWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRD 318
Query: 322 KALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHA 381
+ F S S+ +L+ TD+ ARG+D+ V ++ +D P P ++HR+GR+ R G++G A
Sbjct: 319 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVA 378
Query: 382 VVFL 385
+ F+
Sbjct: 379 INFV 382
>AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) |
chr5:24980542-24983879 REVERSE LENGTH=671
Length = 671
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 184/379 (48%), Gaps = 35/379 (9%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
+S P+ + L +G + P+QA+T ++ D+ A TG GKTLAFVLP++E L
Sbjct: 103 ISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGP 162
Query: 83 PKPKPHQVLG-----IIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKI 137
K K G +++ PTREL+ Q+ + +L + S L GG K+
Sbjct: 163 AKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSL-GLSSCCLYGGDSYPVQEGKL 221
Query: 138 EEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKL 197
+ GV+I++GTPGR+ D + R + LDF L+ +LDEAD +L MGF + + I+ ++
Sbjct: 222 -KRGVDIVVGTPGRIKDHIERQN-LDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDS 279
Query: 198 RR--TGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIE 255
+ T LFSAT V+ ++ L+ D T + + K + +
Sbjct: 280 TKVQTLLFSATLPSWVKNISNRFLK--------------RDQKTIDLVGNDKMKASNSVR 325
Query: 256 YLECEADKKP-SQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGF--SLIPLH 312
++ +K ++L+ II + + + +S L G LH
Sbjct: 326 HIAIPCNKAAMARLI--------PDIISCYSSGGQTIIFAETKVQVSELSGLLDGSRALH 377
Query: 313 GKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRT 372
G++ Q+ RE LA F + L+ T+VAARGLDI V I+Q +PP++ +IHR GRT
Sbjct: 378 GEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRT 437
Query: 373 ARLGKQGHAVVFLLPKEDS 391
R G G AV ++ S
Sbjct: 438 GRAGNTGVAVTLYDSRKSS 456
>AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=407
Length = 407
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 181/373 (48%), Gaps = 28/373 (7%)
Query: 14 TRFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLP 73
T + E++ LQ GF+ + +Q I C DV A +G+GKT F
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG 91
Query: 74 LVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKAD 133
+++ L + Q ++++PTREL+ QI V + + +K VGG V+ D
Sbjct: 92 VLQQLDYALL-----QCQALVLAPTRELAQQIEKVMRA-LGDYQGVKVHACVGGTSVRED 145
Query: 134 MKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQ 193
++I + GV++++GTPGR+ D++ R L +++ +LDEAD +L GF+ Q+ I
Sbjct: 146 -QRILQAGVHVVVGTPGRVFDMLRRQS-LRPDCIKMFVLDEADEMLSRGFKDQIYDIFQL 203
Query: 194 LPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLH 253
LP + G+FSAT E+ + + PVR+ V+ + T G+
Sbjct: 204 LPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD---------------ELTLEGIK 248
Query: 254 IEYLECEA-DKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLH 312
Y+ E D K L D + +I+ T VD+ + + ++ H
Sbjct: 249 QFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATH 304
Query: 313 GKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRT 372
G M Q R+ + F S S+ +L+ TD+ ARG+D+ V ++ +D P P ++HR+GR+
Sbjct: 305 GDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 364
Query: 373 ARLGKQGHAVVFL 385
R G++G A+ F+
Sbjct: 365 GRFGRKGVAINFV 377
>AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25319798-25322071
REVERSE LENGTH=484
Length = 484
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 180/341 (52%), Gaps = 34/341 (9%)
Query: 16 FSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLP-L 74
F + N P + +L+A+ GF TP+QA P+ +D+ A TGSGKTLA++LP L
Sbjct: 167 FQDANFP--DNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAL 224
Query: 75 VEILRRSSPKPKPHQVLG---IIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVK 131
V + S +P+ Q G +I++PTREL+ QI ++ F ++S + GG
Sbjct: 225 VHV----SAQPRLGQDDGPIVLILAPTRELAVQIQEESRKF-GLRSGVRSTCIYGGAPKG 279
Query: 132 ADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSII 191
++ + GV I+I TPGRL D++ + K + L+LDEADR+LDMGF+ Q+ I+
Sbjct: 280 PQIRDLRR-GVEIVIATPGRLIDMLE-CQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIV 337
Query: 192 TQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSG 251
+Q+ R+T L+SAT VE LA+ LR+P + + + +AN + + +E TP
Sbjct: 338 SQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQ-SINQVIEIVPTPEK 396
Query: 252 LH--IEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLI 309
+ + L+ QL+D KI+I+ T D L + G+ +
Sbjct: 397 YNRLLTLLK--------QLMD------GSKILIFVETKRGCDQVTRQL----RMDGWPAL 438
Query: 310 PLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGV 350
+HG Q+ R++ LA F S + I+ TDVAARGL G+
Sbjct: 439 AIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLVSSGI 479
>AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=468
Length = 468
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/402 (28%), Positives = 190/402 (47%), Gaps = 44/402 (10%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
L +L+A+ DSGF+ + VQ IP DV A +G GKT FVL ++ +
Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI---- 108
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGV 142
+P P QV +++ TREL+ QI + F + L + K + GGV++K ++ E
Sbjct: 109 -EPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP 167
Query: 143 NILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLD-MGFQKQLTSIITQLPKLRRTG 201
+I++GTPGR+ + D L K + ILDE D++L+ + ++ + I P ++
Sbjct: 168 HIVVGTPGRVLALAREKD-LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 202 LFSATQTEAVEELAKAGLRNPVR-------------------VEVRAETKRA--NDPATA 240
+FSAT ++ + + K +++ +R V R R N P+
Sbjct: 227 MFSATLSKEIRPVCKKFMQDGLRTLSGDSVALWWVGFGSGYCVFPRFHRARMGLNVPSNI 286
Query: 241 KQL------ESSKTPSGL---HIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVD 291
+ E+ T GL +I+ E E ++K + L+D L N +++I+ + +
Sbjct: 287 DPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFN---QVVIFVKSVS--- 340
Query: 292 FWGTVLPHISVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVD 351
L + V F I +H M Q R SF IL+ TD+ RG+DI V+
Sbjct: 341 -RAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVN 399
Query: 352 CIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEDSYV 393
++ YD P + ++HRVGR R G +G A+ F+ DS V
Sbjct: 400 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEV 441
>AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3554272-3556646 FORWARD LENGTH=344
Length = 344
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 169/343 (49%), Gaps = 31/343 (9%)
Query: 55 DVAVDAATGSGKTLAFVLPLVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFIS 114
DV A +G GKT FVL ++ + +P P QV +++ TREL+ QI + F +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQI-----EPSPGQVSALVLCHTRELAYQICNEFVRFST 56
Query: 115 TLVNIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDE 174
L + K + GGV++K ++ E +I++GTPGR+ + D L K + ILDE
Sbjct: 57 YLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKD-LSLKNVRHFILDE 115
Query: 175 ADRLLD-MGFQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKR 233
D++L+ + ++ + I P ++ +FSAT ++ + + K +++P+ + V E K
Sbjct: 116 CDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL 175
Query: 234 ANDPATAKQLESSKTPSGL---HIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACV 290
T GL +I+ E E ++K + L+D L N +++I+ + +
Sbjct: 176 --------------TLHGLVQHYIKLSEMEKNRKLNDLLDALDFN---QVVIFVKSVS-- 216
Query: 291 DFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGV 350
L + V F I +H M Q R SF IL+ TD+ RG+DI V
Sbjct: 217 --RAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERV 274
Query: 351 DCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEDSYV 393
+ ++ YD P + ++HRVGR R G +G A+ F+ DS V
Sbjct: 275 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEV 317
>AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 180/365 (49%), Gaps = 29/365 (7%)
Query: 27 VLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVE---ILRRSSP 83
+L L +G+DF TP+Q IP + K + A TGSGKT +F++P++ P
Sbjct: 121 LLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHP 180
Query: 84 KPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVN 143
+ L ++++PTREL Q+ A+ + + K+ L+VGG + + +I++ GV
Sbjct: 181 SDQRRNPLAMVLAPTRELCVQVEDQAK-MLGKGLPFKTALVVGGDPMSGQLYRIQQ-GVE 238
Query: 144 ILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGLF 203
++IGTPGR+ D++++ I + + +LDE D +L GF+ Q+ I L + + LF
Sbjct: 239 LIIGTPGRVVDLLSKHTI-ELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQ-PQVLLF 296
Query: 204 SATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATA-KQLESSKTPSGLHIEYLECEAD 262
SAT + VE++ + + + V + N P A QL + +A
Sbjct: 297 SATISREVEKVGGSLAKEIILVSI----GNPNKPNKAVNQLA------------IWVDAK 340
Query: 263 KKPSQLVDFLVKNRSKK--IIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVR 320
+K +L D L K ++Y + D I+V+ G + +HG+ R
Sbjct: 341 QKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANA---ITVVTGVKALSIHGEKPMKER 397
Query: 321 EKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGH 380
+ SF +L+ T V RG+D+ V ++ +D P +IH +GR +R+G++G
Sbjct: 398 RDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGT 457
Query: 381 AVVFL 385
A+VF+
Sbjct: 458 AIVFV 462
>AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 180/365 (49%), Gaps = 29/365 (7%)
Query: 27 VLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVE---ILRRSSP 83
+L L +G+DF TP+Q IP + K + A TGSGKT +F++P++ P
Sbjct: 121 LLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHP 180
Query: 84 KPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVN 143
+ L ++++PTREL Q+ A+ + + K+ L+VGG + + +I++ GV
Sbjct: 181 SDQRRNPLAMVLAPTRELCVQVEDQAK-MLGKGLPFKTALVVGGDPMSGQLYRIQQ-GVE 238
Query: 144 ILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGLF 203
++IGTPGR+ D++++ I + + +LDE D +L GF+ Q+ I L + + LF
Sbjct: 239 LIIGTPGRVVDLLSKHTI-ELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQ-PQVLLF 296
Query: 204 SATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATA-KQLESSKTPSGLHIEYLECEAD 262
SAT + VE++ + + + V + N P A QL + +A
Sbjct: 297 SATISREVEKVGGSLAKEIILVSI----GNPNKPNKAVNQLA------------IWVDAK 340
Query: 263 KKPSQLVDFLVKNRSKK--IIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVR 320
+K +L D L K ++Y + D I+V+ G + +HG+ R
Sbjct: 341 QKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANA---ITVVTGVKALSIHGEKPMKER 397
Query: 321 EKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGH 380
+ SF +L+ T V RG+D+ V ++ +D P +IH +GR +R+G++G
Sbjct: 398 RDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGT 457
Query: 381 AVVFL 385
A+VF+
Sbjct: 458 AIVFV 462
>AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWARD
LENGTH=621
Length = 621
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 116/390 (29%), Positives = 198/390 (50%), Gaps = 39/390 (10%)
Query: 16 FSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLV 75
F EL LSE V+ AL + + T +Q IP + K V + + TGSGKTLA++LP+V
Sbjct: 114 FQELG--LSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 76 EILRRS----SPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVK 131
+++R K KP + +++ PTRELS Q+Y VA+ IS +S+L+ GG ++
Sbjct: 172 QLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKS-ISHHARFRSILVSGGSRIR 230
Query: 132 ADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSII 191
+ +++++GTPGR+ + +++ + ++ L+LDEAD + D GF ++ +
Sbjct: 231 PQEDSL-NNAIDMVVGTPGRILQHIEEGNMV-YGDIAYLVLDEADTMFDRGFGPEIRKFL 288
Query: 192 TQLPKLR--------RTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKR-ANDPATAKQ 242
L + +T L +AT T AV++L + + K+ AN +
Sbjct: 289 APLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIK 348
Query: 243 LESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISV 302
L + ++ LE PS L K K++++ C ++ V ++S
Sbjct: 349 LSGGEDKLEALLQVLE------PS-----LAKG--SKVMVF---CNTLNSSRAVDHYLSE 392
Query: 303 LKGFSLIPLHGKMKQTVREKALASFTSLSNG--ILLCTDVAARGLDIPGVDCIVQYDPPQ 360
+ S + HG++ R + L F L+CTD+AARGLD+ VD +V +D P+
Sbjct: 393 NQ-ISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPK 450
Query: 361 DPNVFIHRVGRTARLGKQGHAVVFLLPKED 390
+ ++HR GRTAR+G +G V L+ ++D
Sbjct: 451 NSIDYLHRTGRTARMGAKG-KVTSLVSRKD 479
>AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=486
Length = 486
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 115/420 (27%), Positives = 190/420 (45%), Gaps = 62/420 (14%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
L +L+A+ DSGF+ + VQ IP DV A +G GKT FVL ++ +
Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI---- 108
Query: 83 PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGV 142
+P P QV +++ TREL+ QI + F + L + K + GGV++K ++ E
Sbjct: 109 -EPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP 167
Query: 143 NILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLD-MGFQKQLTSIITQLPKLRRTG 201
+I++GTPGR+ + D L K + ILDE D++L+ + ++ + I P ++
Sbjct: 168 HIVVGTPGRVLALAREKD-LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 202 LFSATQTEAVEELAKAGLRNPVRVEV-------------------------------RA- 229
+FSAT ++ + + K +++ + E RA
Sbjct: 227 MFSATLSKEIRPVCKKFMQDFLENETVSVRLFSFGVENSEWRLCSFGFIVLVWVSMFRAI 286
Query: 230 ----------ETKRANDPATAKQL---ESSKTPSGL---HIEYLECEADKKPSQLVDFLV 273
E KR + + E+ T GL +I+ E E ++K + L+D L
Sbjct: 287 LMFHSKTHIFEEKRWTRISPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALD 346
Query: 274 KNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALASFTSLSNG 333
N +++I+ + + L + V F I +H M Q R SF
Sbjct: 347 FN---QVVIFVKSVS----RAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKR 399
Query: 334 ILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEDSYV 393
IL+ TD+ RG+DI V+ ++ YD P + ++HRVGR R G +G A+ F+ DS V
Sbjct: 400 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEV 459
>AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:2201531-2204662 FORWARD LENGTH=781
Length = 781
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/401 (28%), Positives = 190/401 (47%), Gaps = 50/401 (12%)
Query: 16 FSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLV 75
F+E+ SE +++AL + FD +QA + K + +GSGKTLA+++P++
Sbjct: 376 FAEIG--CSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 76 EILR----RSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVK 131
+ LR + K P I++ PT EL+SQ+ + + V +SM++ GG +
Sbjct: 434 QRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQR 493
Query: 132 ADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLL-DMGFQKQLTSI 190
++ + E+GV++LI TPGR +MN IL L ILDE D L D F+ L ++
Sbjct: 494 TQLENL-EQGVDVLIATPGRFTYLMNE-GILGLSNLRCAILDEVDILFGDDEFEAALQNL 551
Query: 191 ITQLPKLRRTGLFSAT-QTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTP 249
I P + +AT E +L VEV + + P +
Sbjct: 552 INSSPVTAQYLFVTATLPLEIYNKL----------VEVFPDCEVVMGPRV------HRVS 595
Query: 250 SGLHIEYLECEAD------------KKPSQLVDFLVKNRSKKIIIY---FMTCACVDFWG 294
+ L ++C D K + L+ + +N K II+ TC V+
Sbjct: 596 NALEEFLVDCSGDDNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVE--- 652
Query: 295 TVLPHISVL-KGFSLIPLHGKMKQTVREKALASFTSL----SNGILLCTDVAARGLDIPG 349
+ + + ++P H + Q R + FTS ++ L+CTD A+RG+D G
Sbjct: 653 NIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSG 712
Query: 350 VDCIVQYDPPQDPNVFIHRVGRTARLGK-QGHAVVFLLPKE 389
VD +V +D P+DP+ ++ RVGRTAR + +G A +F++ K+
Sbjct: 713 VDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFVVGKQ 753
>AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5738020-5743042
REVERSE LENGTH=826
Length = 826
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 199/428 (46%), Gaps = 95/428 (22%)
Query: 36 FDFCTP--VQAATIPLLC-SFKDVAVDAATGSGKTLAFVLPLVEILRRSSPK-PKPHQVL 91
DF P +Q A + KDV A TGSGKTLAF LP+++ L K K + +
Sbjct: 208 LDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALK 267
Query: 92 G--------------IIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKI 137
G +II+PTREL+ Q+ + L ++K + +VGG+ + +++
Sbjct: 268 GEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNL-SVKVVPIVGGMFSEKQERRL 326
Query: 138 EEEGVNILIGTPGRLHDIMNRMD--ILDFKELEILILDEADRLLDMGFQKQLTSIITQLP 195
+E+ I++ TPGRL ++M+ + +++ L +LDEADR+++ G ++L SI+ LP
Sbjct: 327 KEK-PEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLP 385
Query: 196 ------------------------KLRRTGLFSAT------------------------Q 207
K R+T +FSAT +
Sbjct: 386 VTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGE 445
Query: 208 TEAVEELA-KAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEADKKPS 266
++E L+ +AG+R+ V + A ++E S +++CE +K +
Sbjct: 446 VNSIEVLSERAGMRDNVAI-----IDLTTTSILAPKIEES---------FIKCEEKEKDA 491
Query: 267 QLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHIS-VLK--GFSLIPLHGKMKQTVREKA 323
L L + + I++ C V T L HIS +LK G + L +MKQ R K+
Sbjct: 492 YLYYILSVHGQGRTIVF---CTSV----TDLRHISGLLKILGLDVCTLFSEMKQRARLKS 544
Query: 324 LASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVV 383
+ F + NGIL+ TD+ ARG+DI V I+ Y P V++HR GRTAR G ++
Sbjct: 545 IDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIA 604
Query: 384 FLLPKEDS 391
+ P E S
Sbjct: 605 LIEPNETS 612
>AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 |
chr4:9001426-9004534 FORWARD LENGTH=522
Length = 522
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 130/442 (29%), Positives = 195/442 (44%), Gaps = 78/442 (17%)
Query: 1 MDSSEFPNKALTSTRFSELNPPLSEPVLQALTDSGFDFCTPVQAA----TIPLLCSFKDV 56
+D S N AL + LNP L +AL + G PVQ A TI +D+
Sbjct: 22 VDVSNVENCALDT--LPCLNPKLK----KALENMGISSLFPVQVAVWHETIGPGGFERDI 75
Query: 57 AVDAATGSGKTLAFVLPLVEILRRSSPKPKPHQVL-GIIISPTRELSSQI---YHVAQPF 112
V++ TGSGKTL++ LP+V++L +P + L +++ PTR+L+ Q+ + P
Sbjct: 76 CVNSPTGSGKTLSYALPIVQLL-----ASRPVRCLRALVVLPTRDLALQVKDVFDAIAPA 130
Query: 113 ISTLVN---------------IKSMLLVGGVDVKAD-MKKIEEEGVNILIGTPGRLHDIM 156
+ V IK+ L G+ D + + E V+IL+ TPGRL D +
Sbjct: 131 VGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHI 190
Query: 157 NRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGLF-----------SA 205
N + L L++DE DRLL +Q L +++ QL + LF +
Sbjct: 191 NNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVL-QLTQTSDDSLFPSFTPFVPSAFGS 249
Query: 206 TQT---EAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLE------------SSKTPS 250
QT ++VE K G P V++ DP+ QL+ + P
Sbjct: 250 LQTVRRQSVERGFK-GKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPE 308
Query: 251 GLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMT-------CACVDFWGTVLPHISVL 303
L L CE KP LV L +K II+ + C ++F+G P I
Sbjct: 309 KLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGD--PKIKA- 365
Query: 304 KGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPN 363
K +S G + Q++R K L +F +L+ +D RG+D+ GV ++ YD P
Sbjct: 366 KEYS-----GGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAK 420
Query: 364 VFIHRVGRTARLGKQGHAVVFL 385
FIHR GRTAR G+ G L
Sbjct: 421 TFIHRAGRTARAGQAGRCFTLL 442
>AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359628-360734
FORWARD LENGTH=368
Length = 368
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 168/346 (48%), Gaps = 29/346 (8%)
Query: 46 TIPLLCSFKDVAVDAATGSGKTLAFVLPLVE---ILRRSSPKPKPHQVLGIIISPTRELS 102
IP + K + A TGSGKT +F++P++ P + L ++++PTREL
Sbjct: 3 AIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELC 62
Query: 103 SQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDIL 162
Q+ A+ + + K+ L+VGG + + +I++ GV ++IGTPGR+ D++++ I
Sbjct: 63 VQVEDQAK-MLGKGLPFKTALVVGGDPMSGQLYRIQQ-GVELIIGTPGRVVDLLSKHTI- 119
Query: 163 DFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNP 222
+ + +LDE D +L GF+ Q+ I L + + LFSAT + VE++ + +
Sbjct: 120 ELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQ-PQVLLFSATISREVEKVGGSLAKEI 178
Query: 223 VRVEVRAETKRANDPATA-KQLESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKK-- 279
+ V + N P A QL + +A +K +L D L K
Sbjct: 179 ILVSI----GNPNKPNKAVNQLA------------IWVDAKQKKQKLFDILRSQNHFKPP 222
Query: 280 IIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTD 339
++Y + D I+V+ G + +HG+ R + SF +L+ T
Sbjct: 223 AVVYVSSRVGADLLANA---ITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTG 279
Query: 340 VAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFL 385
V RG+D+ V ++ +D P +IH +GR +R+G++G A+VF+
Sbjct: 280 VLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFV 325
>AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:4351888-4353543 FORWARD LENGTH=551
Length = 551
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 115/441 (26%), Positives = 193/441 (43%), Gaps = 52/441 (11%)
Query: 4 SEFPNKALTSTRFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATG 63
+E + ++ F EL P + +L +L GF T VQ+A +P + D + + TG
Sbjct: 100 AEIVSPLFSAKSFEELGLP--DSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTG 157
Query: 64 SGKTLAFVLP-------LVEILRRS-SPKPKPHQVLGIIISPTRELSSQIYHVAQPFIST 115
SGKTLA++LP L E R S S K ++ +I++P+REL QI + +
Sbjct: 158 SGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGP 217
Query: 116 LVNIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEA 175
+ LVGG + + +++ I++GTPGR+ +I ++ L L+LDE
Sbjct: 218 VHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEI-SKGGKLHTHGCRFLVLDEV 276
Query: 176 DRLLDMGFQKQLTSIITQLPKL--------------RRTGLFSATQTEAVEELAKAGLRN 221
D LL F++ + I+ + K R+T L SAT +V AK+
Sbjct: 277 DELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHE 336
Query: 222 PVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKII 281
PV V+ T +A + + T S + ++ P L + ++ + +
Sbjct: 337 PVLVQANKVTPLDTVQPSAPVMSLTPTTSEADGQ-IQTTIQSLPPALKHYYCISKHQHKV 395
Query: 282 IYFMTCA-CVDFWGTV--LPHISVLK---------GFSLIPLHGKMKQTVREKALASFTS 329
C +D + + H LK G + +HG + + R L F +
Sbjct: 396 DTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKN 455
Query: 330 LSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAV------- 382
+L+ +++ARGLD+ D +V + P D + HR GRT RLG++G V
Sbjct: 456 GEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQ 515
Query: 383 VFLLPKEDS-------YVEFL 396
VF++ K + Y EF+
Sbjct: 516 VFIVKKMEKQLGLPFLYCEFV 536
>AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:16631661-16634834
FORWARD LENGTH=626
Length = 626
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 114/401 (28%), Positives = 174/401 (43%), Gaps = 61/401 (15%)
Query: 16 FSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLV 75
F EL L +++ALT G + T +Q + IP + KDV A TGSGKTLA++LPL+
Sbjct: 48 FEELG--LDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 105
Query: 76 E-ILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTL-VNIKSMLLVGGVDVKAD 133
+ + S K I+ P+REL Q+Y I V +K++ L + +D
Sbjct: 106 QKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSA-SD 164
Query: 134 MKKIEEEGVNILIGTPGRLHDIMNRMDILD----FKELEILILDEADRLLDMGFQKQLTS 189
M+ IL+ TP + +L+ + L IL+LDEAD LL G++ L S
Sbjct: 165 MRNALAGLPEILVSTPACIPKCF-AAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRS 223
Query: 190 IITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTP 249
+ + +P+ + L SAT + VE+L K L NP+ + + + ND A P
Sbjct: 224 VTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTED----NDKEEA-------VP 272
Query: 250 SGLHIEYLECEA-DKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSL 308
S + ++ C A DK L ++ KKI+I+ T +D G L G
Sbjct: 273 SNVQQFWISCSAQDKLLHILALLKLEVVQKKILIFINT---IDM-GFRLKLFLEKFGIKS 328
Query: 309 IPLHGKMKQTVREKALASFTSLSNGILLCTDVAA-------------------------- 342
L+G++ Q R L F + L+ TD +
Sbjct: 329 AILNGELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKP 388
Query: 343 ---------RGLDIPGVDCIVQYDPPQDPNVFIHRVGRTAR 374
RG+D V ++ +D PQ +IHR+GRT R
Sbjct: 389 KLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGR 429
>AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr3:19687968-19690423 FORWARD LENGTH=496
Length = 496
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 184/396 (46%), Gaps = 43/396 (10%)
Query: 12 TSTRFSELNPPLSEPVLQAL-TDSGFDFCTPVQAATIPLLCS--FKDVAVDAATGSGKTL 68
+++RF +LN LS +++ L + F+ + +QA ++P++ + K + A GSGKT
Sbjct: 89 SASRFEDLN--LSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTT 146
Query: 69 AFVLPLVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGV 128
FVL + L R P + Q L I PTREL++Q V Q + I + L V
Sbjct: 147 CFVLGM---LSRVDPTLREPQAL--CICPTRELANQNMEVLQK-MGKFTGITAELAVPDS 200
Query: 129 DVKA-DMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDM-GFQKQ 186
A + +++IGTPG L M L L+IL+ DEAD +L GF+
Sbjct: 201 TRGAPAATRGAPVSAHVVIGTPGTLKKWM-AFKRLGLNHLKILVFDEADHMLATDGFRDD 259
Query: 187 LTSIITQLPKLR---RTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQL 243
I+ + ++ + LFSAT E V++ +++P ++ V+ E + + KQ
Sbjct: 260 SLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALD---SVKQY 316
Query: 244 ESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVL 303
+ IE ++ Q+++ + II+ T A L +
Sbjct: 317 KVVCPKEQNKIEVIK-------DQIMEL---GDIGQTIIFVKTKASAQKVHKALAEM--- 363
Query: 304 KGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQ--- 360
G+ + +HG + ++ R+K + F +L+ TDV ARG D V+ +V Y+ P
Sbjct: 364 -GYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYE 422
Query: 361 ----DPNVFIHRVGRTARLGKQGHAVVFLLPKEDSY 392
D V++HRVGR R G++G VF L +D +
Sbjct: 423 TGEPDYEVYLHRVGRAGRFGRKG--AVFNLLLDDGW 456
>AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6461444-6463687
FORWARD LENGTH=472
Length = 472
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 159/377 (42%), Gaps = 54/377 (14%)
Query: 25 EPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPK 84
E +L + + GF F T +Q +P L + +D + A TGSGKTL ++L + ++
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLI-----N 139
Query: 85 PKPHQVLGIIISPTRELSSQIYHVAQPFIS-TLVNIKS---MLLVGGVDVKADMKKIEEE 140
P+ V +I+ PTREL Q+ VA+ + + +++K M L+ G ++ ++ E
Sbjct: 140 PQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAE 199
Query: 141 GVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLL----DMGFQKQLTSIITQLPK 196
IL+ T L ++ + I + +L++DE D L +G ++L + + K
Sbjct: 200 PPAILVATVASLCHMLEK-HIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDK 258
Query: 197 LRRTGLFSAT---QTEAVEEL--AKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSG 251
R+T SA+ V + K R+ V V V A P
Sbjct: 259 -RQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVSAIM---------------PMPLC 302
Query: 252 LHIEYLECEADKKPSQLVDFLVKNRSKKIIIYF--------------MTCACVDFWGTVL 297
L ++ CE K L+ L + + II+ T ++F T
Sbjct: 303 LLHRFVMCEKTNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKT-- 360
Query: 298 PHISVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYD 357
S ++ L G M R +L +L+ TD+AARG+D+P I +D
Sbjct: 361 ---SYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFD 417
Query: 358 PPQDPNVFIHRVGRTAR 374
PQ ++HR GR R
Sbjct: 418 LPQTVTDYLHRAGRAGR 434
>AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:22090369-22092885 REVERSE LENGTH=581
Length = 581
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 100/219 (45%), Gaps = 33/219 (15%)
Query: 23 LSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSS 82
LS+ V AL DSGFD + QA IP + S KDV V A TGSGKT ++ P+++ L ++
Sbjct: 87 LSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTA 146
Query: 83 ---------PKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKAD 133
+P P + + +I+ P L Q+ + + N +L V V
Sbjct: 147 LDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGN--PLLRVEAV---CG 201
Query: 134 MKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEIL------ILDEADRLLDMGFQKQL 187
+ + +I++ TP L +N ++ + LE L + DEAD LL FQ Q+
Sbjct: 202 SQGWPDRLPDIIVSTPAAL---LNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQI 258
Query: 188 TSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVE 226
+I L F Q V LAK+ L P+ ++
Sbjct: 259 IRLINMLR-------FDEKQ---VSRLAKSNLGRPMEID 287
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 312 HGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGR 371
H K R LA F + G+ +CTD AARG+D+P V ++Q D F+HR+GR
Sbjct: 455 HKNHKLDERANILADFRE-TGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGR 513
Query: 372 TARLGKQGHAVVFLLPKEDSYVEFLR 397
TAR G+ G VE +R
Sbjct: 514 TARAGQYGTVTSLYTEANRDLVEAIR 539