Miyakogusa Predicted Gene

Lj2g3v2794500.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2794500.1 Non Chatacterized Hit- tr|Q8LJN2|Q8LJN2_ORYSJ
Putative uncharacterized protein B1189A09.37 OS=Oryza
,41.43,2e-19,seg,NULL; Pollen_Ole_e_I,Pollen Ole e 1
allergen/extensin,CUFF.39285.1
         (178 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05500.1 | Symbols:  | Pollen Ole e 1 allergen and extensin f...   169   9e-43
AT2G34700.1 | Symbols:  | Pollen Ole e 1 allergen and extensin f...    54   8e-08
AT3G09925.1 | Symbols:  | Pollen Ole e 1 allergen and extensin f...    49   1e-06
AT2G33790.1 | Symbols: ATAGP30, AGP30 | arabinogalactan protein ...    49   2e-06

>AT5G05500.1 | Symbols:  | Pollen Ole e 1 allergen and extensin
           family protein | chr5:1629716-1630267 FORWARD LENGTH=183
          Length = 183

 Score =  169 bits (428), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 97/131 (74%)

Query: 46  YCQSCEHYGTWSLTGAKPIPSAKVSVTCKNHKGKLVYYKVFESDKNGYLYAQLEEFKMQH 105
           YCQSC+ +G+WSL GA+ I  AK+S+ CKNH+ ++ +YKVF +D  G+ Y +L+ FKM  
Sbjct: 50  YCQSCDKFGSWSLAGAEAIAGAKISIICKNHRQQVSFYKVFRTDSYGHFYGELKGFKMTP 109

Query: 106 SLLDHPLHSCYVKPVWSPLESCNLLSNVNHSLDGARLRYQNKRLRGSNYEAVVYSASPLA 165
             LDHPLHSC  K V SP E CNL SN+N++LDGA LRY+ KRL+ +NYEAV+Y+A PLA
Sbjct: 110 HFLDHPLHSCRAKLVSSPREDCNLFSNINNALDGAPLRYEEKRLKWTNYEAVIYAAGPLA 169

Query: 166 FRRSDCSHTAP 176
           FR   C  TAP
Sbjct: 170 FRPDHCPATAP 180


>AT2G34700.1 | Symbols:  | Pollen Ole e 1 allergen and extensin
           family protein | chr2:14634298-14635597 REVERSE
           LENGTH=175
          Length = 175

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 12/126 (9%)

Query: 46  YCQSCEHYGTWSLTGAKPIPSAKVSVTCKNHKGKLVYYKVFESDKNGYLYAQLEEFKMQH 105
           YC+SC++ G  +L  A P+  A V + C N K  +      ++DKNGY +    +     
Sbjct: 53  YCKSCKYSGVDTLLEASPLQGATVKLACNNTKRGVTMET--KTDKNGYFFMLAPK----- 105

Query: 106 SLLDHPLHSCYVKPV----WSPLESCNLLSNVNHSLDGARLRYQNKRLRGSNYEAVVYSA 161
            L  +  H+C   P      +   +C + S +N+ + GA L+  +K +    ++ V++S 
Sbjct: 106 KLTTYAFHTCRAWPTNPGPTTATMTCTVPSKLNNGITGAMLK-PSKTINIGEHDYVLFSV 164

Query: 162 SPLAFR 167
            P AF 
Sbjct: 165 GPFAFE 170


>AT3G09925.1 | Symbols:  | Pollen Ole e 1 allergen and extensin
           family protein | chr3:3051868-3052784 REVERSE LENGTH=171
          Length = 171

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 13  LLLQVIFFPCIAATENAPKAIXXXXXXXXXXXXYCQSCE-HYGTWSLTGAKPIPSAKVSV 71
           LL++++F            A              CQ C  +Y  W + G++PI  A VS+
Sbjct: 10  LLIEILFLVSCVTHITTTAAYNNGDKIHVAGKVMCQDCSLNYDEW-INGSEPIKGAVVSI 68

Query: 72  TCKNHKGKLVYYKVFESDKNGYLYAQLEEFKMQHSLLDHPLHSCYVKPVWSPLESCNLLS 131
           TC + + ++ YY    +D+ G     + +  + H  +  P   C V+ V SP  SCN+ +
Sbjct: 69  TCMDERRRVSYYGSDLTDERGQFDLMVNKV-LSHGKVLKP-QLCNVRLVSSPDLSCNIPT 126

Query: 132 NVNHSLDGARL 142
           N  +   G +L
Sbjct: 127 NFGNGQTGVKL 137


>AT2G33790.1 | Symbols: ATAGP30, AGP30 | arabinogalactan protein 30
           | chr2:14293862-14295237 REVERSE LENGTH=239
          Length = 239

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 16/130 (12%)

Query: 46  YCQSCEHYGTWSLTGAKPIPSAKVSVTCKNHKGKLVYYKVFESDKNGYLYAQLEEFKMQH 105
           YC++C++ G  ++ GAKP+  A V + CKN K  +   K   +DKNGY            
Sbjct: 117 YCKACKYAGVNNVQGAKPVKDAVVRLVCKNKKNSISETK---TDKNGYFM-----LLAPK 168

Query: 106 SLLDHPLHSCYVKPVWSPLESCNLLSNVNHSLDGARLR------YQNKRLRGSNYEAVVY 159
           ++ ++ +  C    V SP   C+ +S+++    G+ L+      + +  +R   Y   VY
Sbjct: 169 TVTNYDIKGCRAFLVKSPDTKCSKVSSLHDGGKGSVLKPVLKPGFSSTIMRWFKYS--VY 226

Query: 160 SASPLAFRRS 169
           +  P AF  +
Sbjct: 227 NVGPFAFEPT 236