Miyakogusa Predicted Gene

Lj2g3v2772370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2772370.1 Non Chatacterized Hit- tr|K4C549|K4C549_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,69.64,0.000000000000005,seg,NULL,CUFF.39269.1
         (614 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12590.1 | Symbols:  | unknown protein; INVOLVED IN: biologic...   700   0.0  

>AT3G12590.1 | Symbols:  | unknown protein; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast; Has
           50 Blast hits to 41 proteins in 15 species: Archae - 0;
           Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43;
           Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
           | chr3:3996473-4003657 REVERSE LENGTH=1184
          Length = 1184

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/625 (59%), Positives = 465/625 (74%), Gaps = 25/625 (4%)

Query: 6   STTFSPCRSPAPAPSTRIHLA-TFSRLRSSFLKKLPEPLRRAIADCLXXXX--------- 55
           S+T+SP +SP  +   ++  A + SRLRSS  KK PEPLRRA+ADCL             
Sbjct: 2   SSTYSPGQSPGSSRLLQLGAAGSASRLRSSSSKKPPEPLRRAVADCLSSSPPPVNSHHGA 61

Query: 56  --XXXXXXXXRTLRDYLAAHATRDVAYSAVLGHTIAERERSPAVVTRCVAILKRYLLRYK 113
                     R LRDYL+A AT D+AY+ +L HTIAER+RSPAVVTRCVA+LKRY+LRYK
Sbjct: 62  IPSMAPSEALRNLRDYLSASATTDLAYNMLLEHTIAERDRSPAVVTRCVALLKRYILRYK 121

Query: 114 PSEETLLQIDCFCSTIIAECEINLNRPWSISLNQKS----AASTNTSPLPISTFASEAVV 169
           P EETLLQ+D FC  +IAEC+         SL QKS    +A    SPLP+S+FAS A+V
Sbjct: 122 PGEETLLQVDKFCVNLIAECDA--------SLKQKSLPVLSAPAGASPLPVSSFASAALV 173

Query: 170 KSLSYVRSLVAQHIPKRLFQPVSFAGPPSASGQSLPTLSSLLRKSFNSQLCPVSVPETVE 229
           KSL YVRSLVA HIP+R FQP +FAG   AS Q LP+LSSLL KSFNSQL P +  E+ +
Sbjct: 174 KSLHYVRSLVALHIPRRSFQPAAFAGATLASRQLLPSLSSLLSKSFNSQLSPANAAESPQ 233

Query: 230 RASVTS-TVSKLSKLEKFDEKDELGFIAHDVLQWRWLEEQQSSTVQADNDRAVNSQDMKS 288
           +    + +VS LS +++ +  ++  +I+ D+L WRW+ E Q S+  ++++R VN QDM +
Sbjct: 234 KKDAANLSVSNLSNIQEINAMEDTEYISSDLLNWRWVGELQLSSASSESERPVNLQDMNN 293

Query: 289 QNFLEVGAAALLVGDIEDKMKGQPWKYFGTDDMPYLDQLMQSSPVTSITNSASARPHLRA 348
            N LEVGAA LLVGD+E KMKGQ WKYFGT +MPYL+QL+Q + VT ITNSASAR HLRA
Sbjct: 294 CNLLEVGAAGLLVGDMEAKMKGQHWKYFGTAEMPYLEQLLQPASVTMITNSASARSHLRA 353

Query: 349 ITASKRTKTGPNLVWEDAPMSTYRPRARQLFQYRCYSDQQPLRLSPAEVCEVIAAVCSEI 408
           ITASKRT+ GP  +W+D+ ++T+RPRAR LFQYR YS+QQPLRL+PAEV EVIAAVCSE 
Sbjct: 354 ITASKRTRAGPQQIWDDSTVNTFRPRARPLFQYRHYSEQQPLRLNPAEVGEVIAAVCSEA 413

Query: 409 SSPNINVMTVSTGLNNSSGKPPMDVAVNVLIKLVIDMYVLDSQIATPLTLAMLEEMLSSS 468
           SS   N MTVS  L + +GKP MDVAV+VLIKLVIDMYVLD++IA PLTL+MLEEML S+
Sbjct: 414 SSTPSNQMTVSPQLTSKTGKPSMDVAVSVLIKLVIDMYVLDARIAAPLTLSMLEEMLCST 473

Query: 469 ETACRVRAFDLILNLGVHAHLLEPTIVDDASIIEEEYSQESFYDSDNQLMAQGSKKENYQ 528
           +  CR+R FDLILNLGVHA LLEP I D+A+ IEE+Y+QE++ D++N+L+ QG++ ++  
Sbjct: 474 KAPCRIRVFDLILNLGVHAQLLEPMISDNATTIEEDYAQETYIDNENRLLLQGTRTKDLP 533

Query: 529 NKLDTFSAINNLESWISNILYEILLLLVQTEEKEESVWASAFSCLLYLVWDRGKIRRNQL 588
               T SAI N ESWI  IL+EILLLLVQ EEKEE VWASA SCLLY + DRGKIRRNQL
Sbjct: 534 KMSSTSSAIENFESWILKILFEILLLLVQVEEKEECVWASALSCLLYFICDRGKIRRNQL 593

Query: 589 QVLDIRVIKALIEISRKNSWAELVH 613
             LDIRVIKAL+  S++NSW+E+VH
Sbjct: 594 NGLDIRVIKALLGTSKRNSWSEVVH 618