Miyakogusa Predicted Gene

Lj2g3v2748740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2748740.1 Non Chatacterized Hit- tr|C5YZD3|C5YZD3_SORBI
Putative uncharacterized protein Sb09g022940 OS=Sorghu,48.84,1e-18,GB
DEF: HYPOTHETICAL PROTEIN F27K19_140 (HYPOTHETICAL PROTEIN
AT3G55960),NULL; NUCLEAR LIM INTERACTO,CUFF.39238.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55960.1 | Symbols:  | Haloacid dehalogenase-like hydrolase (...   109   9e-25

>AT3G55960.1 | Symbols:  | Haloacid dehalogenase-like hydrolase
           (HAD) superfamily protein | chr3:20760797-20762892
           REVERSE LENGTH=305
          Length = 305

 Score =  109 bits (272), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 82/153 (53%), Gaps = 21/153 (13%)

Query: 1   MGELTQAEV-YSPRTQQVWRALLSWLAXXXXXXXXXXRALGHYPLLXXXXXXXXXXXXXX 59
           M ELTQA+V YSPR+ QVW+ L++WLA          RA+G++PLL              
Sbjct: 1   MAELTQADVVYSPRSFQVWKTLVNWLAFFYQIFLQILRAVGYHPLLSSSAKASA------ 54

Query: 60  XXXXPHAFKPLPSVELQEHDSPPPSALEITAVDHHPT---------QKXXXXXXXXXXXX 110
                  FKPLP++EL +  S  P+ +EI A     +         Q+            
Sbjct: 55  -----DGFKPLPAIELLDRASESPTTVEIAATTTSDSCSDGARSRFQRLKVVLDLDETLV 109

Query: 111 CAYETSSLPASLRAQAIEGGLNWFDLECVSSDK 143
           CAYETSSLPA+LR QAIE GL WF+LEC+S+DK
Sbjct: 110 CAYETSSLPAALRNQAIEAGLKWFELECLSTDK 142