Miyakogusa Predicted Gene
- Lj2g3v2724450.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2724450.1 tr|F2D9U8|F2D9U8_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,46.77,3e-18,no
description,Tetratricopeptide-like helical; TPR-like,NULL; NOVEL
PROTEIN (FRAGMENT),NULL;
TETRATR,NODE_66141_length_1656_cov_7.674517.path2.1
(431 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 253 1e-67
AT2G29670.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 185 5e-47
AT1G07280.3 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 177 2e-44
AT1G07280.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 177 2e-44
AT1G07280.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 177 2e-44
AT4G17940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 92 5e-19
AT5G20190.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 79 7e-15
AT1G80130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 74 2e-13
AT4G32340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 66 4e-11
AT1G04530.1 | Symbols: TPR4 | Tetratricopeptide repeat (TPR)-lik... 62 7e-10
>AT3G47080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:17338415-17340129 REVERSE
LENGTH=515
Length = 515
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 212/366 (57%), Gaps = 55/366 (15%)
Query: 98 VLDPSLLGIQPESPSWPERDEILRLNFERKVNSVGIPLSIRMIKKKLQWEKGLTEASEFT 157
+L S+ G+ W E + + ERK NSV +PLS+R+IK+KLQ E+ L +AS T
Sbjct: 159 LLQESVPGLASLEAPWAEM--VNHSSIERKANSVDLPLSLRIIKRKLQ-EEALKKASATT 215
Query: 158 SCSVKRVFSSMLFIIHELQNHVLQTREILCCEDLQGAMAKLQGDLDVSFVWLFQNIFWKS 217
CS+ R FSSM+F+I EL + LQTR G + +++ ++ S +W+FQ +F ++
Sbjct: 216 YCSINRAFSSMVFMIEELHSFALQTR--------VGVLKQVKKEMHASLLWIFQRVFSQT 267
Query: 218 PNLMVNVMVLLANFSVFSMCDN-------------------------------------- 239
P LMV VM+LLAN++V S+ N
Sbjct: 268 PTLMVYVMILLANYTVHSVASNLPIAASPPVVNKGPDQTQQRIDFSSLKESTKLDGSKWL 327
Query: 240 -NVMTNNRNKLLQHSQGESGKQELTEDEEMLWKSMLEEASRWQNELQSEALDHETVLKFV 298
++ + + L +H SG + + E+E LW SM+EEA +++Q ++D + L+ V
Sbjct: 328 GSINFDKVSHLPRHRDSVSG-EGMREEEVSLWNSMVEEA----DQMQDSSVDRDMRLRLV 382
Query: 299 APVSIQLEGDQYEEYVKTRLYYRKHLRQAPYNSLLLSNYAQFLYLVVHDLDGAEEYFKRS 358
+P++ ++E D Y Y +T L Y+ L Q P N LLL+NYAQFLYLV D + AE FK++
Sbjct: 383 SPITARIELDDYANYTRTELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKA 442
Query: 359 VLEEPPDAEAFSRYADFLWLVRKDLEAAELRYQEALEEEPRNTYYASKYANFLWSTGGKD 418
+ E DAE +S+YA FLW VR DL AAE + EA+ +P N++YA+ YANFLW+TGG++
Sbjct: 443 IESEDVDAETYSKYAIFLWKVRNDLWAAEENFLEAISADPTNSFYAANYANFLWNTGGEE 502
Query: 419 TCFPLE 424
TCFPLE
Sbjct: 503 TCFPLE 508
>AT2G29670.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:12682309-12684745 REVERSE
LENGTH=536
Length = 536
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 114/161 (70%)
Query: 264 EDEEMLWKSMLEEASRWQNELQSEALDHETVLKFVAPVSIQLEGDQYEEYVKTRLYYRKH 323
+DE LW SM+EEA R Q ++LD ET +FV+ V ++E ++ Y KT L Y+
Sbjct: 368 QDEHRLWNSMVEEAERMQYSNIDDSLDQETRKRFVSHVEARVEAEEDTGYFKTELMYQTE 427
Query: 324 LRQAPYNSLLLSNYAQFLYLVVHDLDGAEEYFKRSVLEEPPDAEAFSRYADFLWLVRKDL 383
L Q P N LLL+NYAQFLYLV +D D AEEYFKR+V EP DAEAFS+YA FLW R DL
Sbjct: 428 LSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATFLWRARDDL 487
Query: 384 EAAELRYQEALEEEPRNTYYASKYANFLWSTGGKDTCFPLE 424
AAE + EA++ +P N+YYA+ YANFLW+TGG DTCFPL+
Sbjct: 488 WAAEETFLEAIDADPTNSYYAANYANFLWNTGGDDTCFPLD 528
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 94/131 (71%), Gaps = 4/131 (3%)
Query: 111 PSWPERDEILRLN-FERKVNSVGIPLSIRMIKKKLQWEKGLTEASEFTSCSVKRVFSSML 169
P W +E++ L+ E K NSV +PLS+R+IKKK QWE+G+ +A E CS+ + FSSM+
Sbjct: 138 PPW---NEMVHLSSIEMKANSVDLPLSLRIIKKKRQWEEGVKQAGESACCSMNKAFSSMV 194
Query: 170 FIIHELQNHVLQTREILCCEDLQGAMAKLQGDLDVSFVWLFQNIFWKSPNLMVNVMVLLA 229
F+I ELQ+ L REIL EDLQ + +++ ++ SFVWLFQ +F +P LMV VM+LLA
Sbjct: 195 FMIRELQSFTLHMREILFYEDLQEILLRVREEMQQSFVWLFQQVFSATPTLMVYVMILLA 254
Query: 230 NFSVFSMCDNN 240
NF+V+S+ +N+
Sbjct: 255 NFTVYSIGNNS 265
>AT1G07280.3 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2238505-2240991 FORWARD
LENGTH=552
Length = 552
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 190/388 (48%), Gaps = 75/388 (19%)
Query: 111 PSWPERDEILRLNFERKVNSVGIPLSIRMIKKKLQWEKG-LTEASEFTSCSVKRVFSSML 169
P WPE ++ N ERK NSV +PLS+R+IK+KLQ E+G L + E CSVK+ FSSM+
Sbjct: 161 PPWPEMVQMS--NIERKANSVDLPLSLRIIKRKLQMEEGVLNQVGESACCSVKKAFSSMV 218
Query: 170 FIIHELQNHVLQTREILCCEDLQGAMAKLQGDLDVSFVWLFQNIFWKSPNLMVNVMVLLA 229
F+I ELQ+ L RE+L EDLQG + +++ ++ SFVWLFQ +F +P LMV+VM+LLA
Sbjct: 219 FMIRELQSFTLHMRELLLFEDLQGILHRVRKEMQASFVWLFQQVFSATPTLMVSVMILLA 278
Query: 230 NFSVFSMCDNNVMTNNRNKLLQHSQGESGKQELTEDEEMLWK---SMLEEASRWQNELQS 286
NF+V+S+ N+ + + S E++E +E K SM++ S ++
Sbjct: 279 NFTVYSIESNSALAAAVSPPTTLSFSFETTAEISETQETNQKFDSSMVKTFSVSSPYGKT 338
Query: 287 EALDHETVLKFVAPVSIQLEGDQYEEYVKTRLYYRKHLRQAPYNS--------------L 332
+ PV +GD +++ K++ + L +S
Sbjct: 339 SFVGGGGGNNIPPPVQSGTDGDGSDQFRKSQ-FSSSSLGATSADSDVSVSGQEEIRLWNS 397
Query: 333 LLSNYAQFLYLVVHDLDG----------AEE---YFKRSVL------EEPPDAEAFSRYA 373
+L A+ L + G AEE YFK +L +EP + + YA
Sbjct: 398 ILEETAKMETLDHETMKGMVSPVEARLEAEESMDYFKTELLYQTGLSQEPGNVLLLANYA 457
Query: 374 DFLWLV-----------------------------------RKDLEAAELRYQEALEEEP 398
FL+L+ R D+ AE Y EA+ +P
Sbjct: 458 QFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFLWRARNDIWRAEETYLEAISADP 517
Query: 399 RNTYYASKYANFLWSTGGKDTCFPLESP 426
N+ Y++ YA+FLW+TGG +TCFPL++P
Sbjct: 518 TNSVYSANYAHFLWNTGGDETCFPLDAP 545
>AT1G07280.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2238505-2240991 FORWARD
LENGTH=552
Length = 552
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 190/388 (48%), Gaps = 75/388 (19%)
Query: 111 PSWPERDEILRLNFERKVNSVGIPLSIRMIKKKLQWEKG-LTEASEFTSCSVKRVFSSML 169
P WPE ++ N ERK NSV +PLS+R+IK+KLQ E+G L + E CSVK+ FSSM+
Sbjct: 161 PPWPEMVQMS--NIERKANSVDLPLSLRIIKRKLQMEEGVLNQVGESACCSVKKAFSSMV 218
Query: 170 FIIHELQNHVLQTREILCCEDLQGAMAKLQGDLDVSFVWLFQNIFWKSPNLMVNVMVLLA 229
F+I ELQ+ L RE+L EDLQG + +++ ++ SFVWLFQ +F +P LMV+VM+LLA
Sbjct: 219 FMIRELQSFTLHMRELLLFEDLQGILHRVRKEMQASFVWLFQQVFSATPTLMVSVMILLA 278
Query: 230 NFSVFSMCDNNVMTNNRNKLLQHSQGESGKQELTEDEEMLWK---SMLEEASRWQNELQS 286
NF+V+S+ N+ + + S E++E +E K SM++ S ++
Sbjct: 279 NFTVYSIESNSALAAAVSPPTTLSFSFETTAEISETQETNQKFDSSMVKTFSVSSPYGKT 338
Query: 287 EALDHETVLKFVAPVSIQLEGDQYEEYVKTRLYYRKHLRQAPYNS--------------L 332
+ PV +GD +++ K++ + L +S
Sbjct: 339 SFVGGGGGNNIPPPVQSGTDGDGSDQFRKSQ-FSSSSLGATSADSDVSVSGQEEIRLWNS 397
Query: 333 LLSNYAQFLYLVVHDLDG----------AEE---YFKRSVL------EEPPDAEAFSRYA 373
+L A+ L + G AEE YFK +L +EP + + YA
Sbjct: 398 ILEETAKMETLDHETMKGMVSPVEARLEAEESMDYFKTELLYQTGLSQEPGNVLLLANYA 457
Query: 374 DFLWLV-----------------------------------RKDLEAAELRYQEALEEEP 398
FL+L+ R D+ AE Y EA+ +P
Sbjct: 458 QFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFLWRARNDIWRAEETYLEAISADP 517
Query: 399 RNTYYASKYANFLWSTGGKDTCFPLESP 426
N+ Y++ YA+FLW+TGG +TCFPL++P
Sbjct: 518 TNSVYSANYAHFLWNTGGDETCFPLDAP 545
>AT1G07280.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2238505-2240991 FORWARD
LENGTH=552
Length = 552
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 190/388 (48%), Gaps = 75/388 (19%)
Query: 111 PSWPERDEILRLNFERKVNSVGIPLSIRMIKKKLQWEKG-LTEASEFTSCSVKRVFSSML 169
P WPE ++ N ERK NSV +PLS+R+IK+KLQ E+G L + E CSVK+ FSSM+
Sbjct: 161 PPWPEMVQMS--NIERKANSVDLPLSLRIIKRKLQMEEGVLNQVGESACCSVKKAFSSMV 218
Query: 170 FIIHELQNHVLQTREILCCEDLQGAMAKLQGDLDVSFVWLFQNIFWKSPNLMVNVMVLLA 229
F+I ELQ+ L RE+L EDLQG + +++ ++ SFVWLFQ +F +P LMV+VM+LLA
Sbjct: 219 FMIRELQSFTLHMRELLLFEDLQGILHRVRKEMQASFVWLFQQVFSATPTLMVSVMILLA 278
Query: 230 NFSVFSMCDNNVMTNNRNKLLQHSQGESGKQELTEDEEMLWK---SMLEEASRWQNELQS 286
NF+V+S+ N+ + + S E++E +E K SM++ S ++
Sbjct: 279 NFTVYSIESNSALAAAVSPPTTLSFSFETTAEISETQETNQKFDSSMVKTFSVSSPYGKT 338
Query: 287 EALDHETVLKFVAPVSIQLEGDQYEEYVKTRLYYRKHLRQAPYNS--------------L 332
+ PV +GD +++ K++ + L +S
Sbjct: 339 SFVGGGGGNNIPPPVQSGTDGDGSDQFRKSQ-FSSSSLGATSADSDVSVSGQEEIRLWNS 397
Query: 333 LLSNYAQFLYLVVHDLDG----------AEE---YFKRSVL------EEPPDAEAFSRYA 373
+L A+ L + G AEE YFK +L +EP + + YA
Sbjct: 398 ILEETAKMETLDHETMKGMVSPVEARLEAEESMDYFKTELLYQTGLSQEPGNVLLLANYA 457
Query: 374 DFLWLV-----------------------------------RKDLEAAELRYQEALEEEP 398
FL+L+ R D+ AE Y EA+ +P
Sbjct: 458 QFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFLWRARNDIWRAEETYLEAISADP 517
Query: 399 RNTYYASKYANFLWSTGGKDTCFPLESP 426
N+ Y++ YA+FLW+TGG +TCFPL++P
Sbjct: 518 TNSVYSANYAHFLWNTGGDETCFPLDAP 545
>AT4G17940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:9965787-9966778 FORWARD
LENGTH=274
Length = 274
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 60/102 (58%)
Query: 311 EEYVKTRLYYRKHLRQAPYNSLLLSNYAQFLYLVVHDLDGAEEYFKRSVLEEPPDAEAFS 370
E+ K YYR+ LR P NSLLL NY +FLY V D +GAEEY+ R++LE P D EA S
Sbjct: 145 EDKSKIGDYYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALS 204
Query: 371 RYADFLWLVRKDLEAAELRYQEALEEEPRNTYYASKYANFLW 412
Y +W ++D + A+ + +A+ P + YA F+W
Sbjct: 205 MYGRLIWETKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMW 246
>AT5G20190.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:6814093-6815171 FORWARD
LENGTH=290
Length = 290
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%)
Query: 316 TRLYYRKHLRQAPYNSLLLSNYAQFLYLVVHDLDGAEEYFKRSVLEEPPDAEAFSRYADF 375
T ++YRK + P N + LSNYA+FL V D AEEY R++L P D + YA+
Sbjct: 156 TDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAEL 215
Query: 376 LWLVRKDLEAAELRYQEALEEEPRNTYYASKYANFLW 412
+W + KD AE + +A+ P + Y + YA FLW
Sbjct: 216 VWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLW 252
>AT1G80130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:30141250-30142478 REVERSE
LENGTH=305
Length = 305
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%)
Query: 316 TRLYYRKHLRQAPYNSLLLSNYAQFLYLVVHDLDGAEEYFKRSVLEEPPDAEAFSRYADF 375
T YYR+ + P NSLL NYA+FL V D+ AEEY +R++L D S YAD
Sbjct: 165 TDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADL 224
Query: 376 LWLVRKDLEAAELRYQEALEEEPRNTYYASKYANFLW 412
+ +D + A Y++A++ P + Y + YA FLW
Sbjct: 225 ILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLW 261
>AT4G32340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:15612741-15614219 REVERSE
LENGTH=238
Length = 238
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 319 YYRKHLRQAPYNSLLLSNYAQFLYLVVHDLDGAEEYFKRSVLEEPP-DAEAFSRYADFLW 377
YY + +++ P ++LLLSNYA+FL V D AEEY +R++L E D E S Y D +W
Sbjct: 113 YYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGDLIW 172
Query: 378 LVRKDLEAAELRYQEALEEEPRNTYYASKYANFLW 412
D A+ Y +A++ P + + YA FLW
Sbjct: 173 KNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLW 207
>AT1G04530.1 | Symbols: TPR4 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1234456-1235895 REVERSE
LENGTH=310
Length = 310
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 319 YYRKHLRQAPYNSLLLSNYAQFLYLVVHDLDGAEEYFKRSVLEEPPDAEAFSRYADFLWL 378
YY+ L + P + LLL NYA+FL DL GAEEY+ + + EP D A + Y +
Sbjct: 124 YYKGMLEEYPLHPLLLKNYAKFLEYK-GDLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 182
Query: 379 VRKDLEAAELRYQEALEEEPRNTYYASKYANFLW 412
+ +D A ++ A++ P ++ + YA+FLW
Sbjct: 183 LHQDEAKAMSYFERAVQASPDDSIVLAAYASFLW 216