Miyakogusa Predicted Gene
- Lj2g3v2703350.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2703350.1 Non Chatacterized Hit- tr|I3SNM9|I3SNM9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.65,0,seg,NULL;
JAB/MPN domain,JAB1/Mov34/MPN/PAD-1; JAB,JAB1/Mov34/MPN/PAD-1;
MitMem_reg,Rpn11/EIF3F C-te,CUFF.39213.1
(288 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G39990.1 | Symbols: EIF2, AteIF3f, eIF3F | eukaryotic transla... 402 e-112
AT3G11270.2 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein | ... 107 1e-23
AT3G11270.1 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein | ... 106 2e-23
AT5G05780.2 | Symbols: RPN8A | RP non-ATPase subunit 8A | chr5:1... 100 2e-21
AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase subu... 99 4e-21
AT4G26430.1 | Symbols: CSN6B | COP9 signalosome subunit 6B | chr... 60 2e-09
AT5G56280.1 | Symbols: CSN6A | COP9 signalosome subunit 6A | chr... 55 4e-08
>AT2G39990.1 | Symbols: EIF2, AteIF3f, eIF3F | eukaryotic
translation initiation factor 2 | chr2:16698332-16699929
REVERSE LENGTH=293
Length = 293
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/291 (71%), Positives = 234/291 (80%), Gaps = 4/291 (1%)
Query: 2 AASDRTVLQF----XXXXXXXXXXXARVHPLVIFNICDCFVRRPDQAERVIGTLLGSILP 57
A S+ T+LQF AR+HPLVIFN+CDCFVRRPD AERVIGTLLGSILP
Sbjct: 3 ATSEHTILQFVSPSSTASATTSVLTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILP 62
Query: 58 DGTVDIRNSYAVPHNESIDQVALDIEYQHNMLVAHQKVNPKEVIVGWYSTGLGVTGHSVL 117
DGTVDIRNSYAVPHNES DQVA+DI+Y HNML +H KVN KE IVGWYSTG GV G S L
Sbjct: 63 DGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSL 122
Query: 118 IHEFFSREVTNPIHLTVDTEFANGVGTIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAE 177
IH+F++REV NPIHLTVDT F NG GTIKA+VS+NLSLGDRQ+ A FQEIP+DLRMV+AE
Sbjct: 123 IHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQEIPVDLRMVDAE 182
Query: 178 RIGFDTLKATTVEKIPSDLEGMEASMEHLLALXXXXXXXXXXXXEGRIAPDNNIGKFISD 237
R+GFD LKAT+V+K+P+DLEGME +ME LL L G+IAPDNNIG+FI+D
Sbjct: 183 RVGFDVLKATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQIAPDNNIGRFIAD 242
Query: 238 AVGSLPKSPPAVFDKLVNDSLQDHLLSLYLSSITRTQLSLAEKLNTAAQIL 288
AV SLPK PP VFD LVNDSLQD LL LYLSSITRTQLSLAEKLNTAAQ+L
Sbjct: 243 AVASLPKLPPQVFDNLVNDSLQDQLLLLYLSSITRTQLSLAEKLNTAAQML 293
>AT3G11270.2 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein |
chr3:3528989-3531317 FORWARD LENGTH=307
Length = 307
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 133/269 (49%), Gaps = 16/269 (5%)
Query: 25 VHPLVIFNICDCFVR-RPDQAERVIGTLLGSILPDGTVDIRNSYAVPHNESIDQVA---L 80
VHPLV+ +I D + R D ++RV+G LLGS GTVD+ NSYAVP E + L
Sbjct: 19 VHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSS-SRGTVDVTNSYAVPFEEDDKDTSIWFL 77
Query: 81 DIEYQHNMLVAHQKVNPKEVIVGWYSTGLGVTGHSVLIHEFFSREVTNPIHLTVDTEFAN 140
D Y +M +++N KE IVGWYSTG + + + +H F+ V NP+ + +D +
Sbjct: 78 DHNYHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKE 137
Query: 141 -GVGTIKAY--VSNNLSLGDRQIAAQFQEIPLDLRMVEAERIGFDTL----KATTVEKIP 193
G+ T KAY V N + +Q+ F +P ++ E E IG + L K TT+ +
Sbjct: 138 LGIPT-KAYYAVEENATQKSQQV---FVHVPTEIAAHEVEEIGVEHLLRDVKDTTISTLA 193
Query: 194 SDLEGMEASMEHLLALXXXXXXXXXXXXEGRIAPDNNIGKFISDAVGSLPKSPPAVFDKL 253
+++ +++ L A EG++ ++ I + D LP K
Sbjct: 194 TEVTAKLTALKGLDARLREIRTYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKA 253
Query: 254 VNDSLQDHLLSLYLSSITRTQLSLAEKLN 282
D +L +YLSS+ R+ ++L +N
Sbjct: 254 FAVKTNDMMLVIYLSSLIRSVIALHSLIN 282
>AT3G11270.1 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein |
chr3:3528989-3531317 FORWARD LENGTH=310
Length = 310
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 11/268 (4%)
Query: 25 VHPLVIFNICDCFVR-RPDQAERVIGTLLGSILPDGTVDIRNSYAVPHNESIDQVA---L 80
VHPLV+ +I D + R D ++RV+G LLGS GTVD+ NSYAVP E + L
Sbjct: 19 VHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSS-SRGTVDVTNSYAVPFEEDDKDTSIWFL 77
Query: 81 DIEYQHNMLVAHQKVNPKEVIVGWYSTGLGVTGHSVLIHEFFSREVTNPIHLTVDTEFAN 140
D Y +M +++N KE IVGWYSTG + + + +H F+ V NP+ + +D +
Sbjct: 78 DHNYHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKE 137
Query: 141 -GVGTIKAYVSNNLSLGDRQIAAQ-FQEIPLDLRMVEAERIGFDTL----KATTVEKIPS 194
G+ T Y + Q + Q F +P ++ E E IG + L K TT+ + +
Sbjct: 138 LGIPTKAYYAVEEVKENATQKSQQVFVHVPTEIAAHEVEEIGVEHLLRDVKDTTISTLAT 197
Query: 195 DLEGMEASMEHLLALXXXXXXXXXXXXEGRIAPDNNIGKFISDAVGSLPKSPPAVFDKLV 254
++ +++ L A EG++ ++ I + D LP K
Sbjct: 198 EVTAKLTALKGLDARLREIRTYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKAF 257
Query: 255 NDSLQDHLLSLYLSSITRTQLSLAEKLN 282
D +L +YLSS+ R+ ++L +N
Sbjct: 258 AVKTNDMMLVIYLSSLIRSVIALHSLIN 285
>AT5G05780.2 | Symbols: RPN8A | RP non-ATPase subunit 8A |
chr5:1735862-1738176 FORWARD LENGTH=305
Length = 305
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 132/269 (49%), Gaps = 16/269 (5%)
Query: 25 VHPLVIFNICDCFVR-RPDQAERVIGTLLGSILPDGTVDIRNSYAVPHNESIDQVA---L 80
VHPLV+ +I D + R D ++RV+G LLGS G VD+ NSYAVP E + L
Sbjct: 19 VHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSS-SRGVVDVTNSYAVPFEEDDKDPSIWFL 77
Query: 81 DIEYQHNMLVAHQKVNPKEVIVGWYSTGLGVTGHSVLIHEFFSREVTNPIHLTVDTEFAN 140
D Y +M +++N KE +VGWYSTG + + + +H F+ V NP+ + +D +
Sbjct: 78 DHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKE 137
Query: 141 -GVGTIKAY--VSNNLSLGDRQIAAQFQEIPLDLRMVEAERIGFDTL----KATTVEKIP 193
G+ T KAY V N + +++ F + ++ E E IG + L K TT+ +
Sbjct: 138 LGIPT-KAYYAVEENATQKSQKV---FVHVSTEIAAHEVEEIGVEHLLRDVKDTTISTLA 193
Query: 194 SDLEGMEASMEHLLALXXXXXXXXXXXXEGRIAPDNNIGKFISDAVGSLPKSPPAVFDKL 253
+++ +++ L A EG++ ++ I + D LP K
Sbjct: 194 TEVTAKLTALKGLDARLREIRSYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKA 253
Query: 254 VNDSLQDHLLSLYLSSITRTQLSLAEKLN 282
+ D +L +YLSS+ R+ ++L +N
Sbjct: 254 FSVKTNDMMLVIYLSSLIRSVIALHNLIN 282
>AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase subunit
8A | chr5:1735862-1738176 FORWARD LENGTH=308
Length = 308
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 128/268 (47%), Gaps = 11/268 (4%)
Query: 25 VHPLVIFNICDCFVR-RPDQAERVIGTLLGSILPDGTVDIRNSYAVPHNESIDQVA---L 80
VHPLV+ +I D + R D ++RV+G LLGS G VD+ NSYAVP E + L
Sbjct: 19 VHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSS-SRGVVDVTNSYAVPFEEDDKDPSIWFL 77
Query: 81 DIEYQHNMLVAHQKVNPKEVIVGWYSTGLGVTGHSVLIHEFFSREVTNPIHLTVDTEFAN 140
D Y +M +++N KE +VGWYSTG + + + +H F+ V NP+ + +D +
Sbjct: 78 DHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKE 137
Query: 141 -GVGTIKAYVSNNLSLGDRQIAAQ-FQEIPLDLRMVEAERIGFDTL----KATTVEKIPS 194
G+ T Y + Q + + F + ++ E E IG + L K TT+ + +
Sbjct: 138 LGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEHLLRDVKDTTISTLAT 197
Query: 195 DLEGMEASMEHLLALXXXXXXXXXXXXEGRIAPDNNIGKFISDAVGSLPKSPPAVFDKLV 254
++ +++ L A EG++ ++ I + D LP K
Sbjct: 198 EVTAKLTALKGLDARLREIRSYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKAF 257
Query: 255 NDSLQDHLLSLYLSSITRTQLSLAEKLN 282
+ D +L +YLSS+ R+ ++L +N
Sbjct: 258 SVKTNDMMLVIYLSSLIRSVIALHNLIN 285
>AT4G26430.1 | Symbols: CSN6B | COP9 signalosome subunit 6B |
chr4:13355229-13357326 FORWARD LENGTH=317
Length = 317
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 123/296 (41%), Gaps = 39/296 (13%)
Query: 24 RVHPLVIFNICDCFVRRPDQAE-----------------------RVIGTLLGSILPDG- 59
++HPLV+ NI D F R Q RV G ++G L G
Sbjct: 12 KLHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYGCVIG--LQRGR 69
Query: 60 TVDIRNSYAVPHNESIDQVALDIEYQHNMLVAHQKVNPKEVIVGWYSTGLGVTGHSVLIH 119
TV+I NS+ + + ++D LD + ++KV P ++GWYSTG T + IH
Sbjct: 70 TVEIFNSFELIFDPALD--TLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDATESDMHIH 127
Query: 120 EFFSREVTNPIHLTVDTEFANGVGTIKAYV-SNNLSLGDRQIAAQFQEIPLDLRMVEAER 178
+ +P+++ ++ + + + + + D + F + VEAER
Sbjct: 128 KALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIFVHTSYTIETVEAER 187
Query: 179 IGFDTLK-------ATTVEKIPSDLEGMEASMEHLLALXXXXXXXXXXXXEGRIAPDNNI 231
I D + + ++ + L G+ ++++ L + +G +N++
Sbjct: 188 ISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHIVAMQKGDKPCENSV 247
Query: 232 GKFISDAVGSLPKSPPAVFDKLVNDSLQDHLLSLYLSSITRTQLSLAE---KLNTA 284
+ +S + SLP + F++ D LL YL+ IT ++ E K NTA
Sbjct: 248 LRQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKFNTA 303
>AT5G56280.1 | Symbols: CSN6A | COP9 signalosome subunit 6A |
chr5:22783617-22785530 REVERSE LENGTH=317
Length = 317
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 121/298 (40%), Gaps = 43/298 (14%)
Query: 24 RVHPLVIFNICDCFVRRPDQAE-----------------------RVIGTLLGSILPDGT 60
++HPLVI NI D + R Q RV G ++G + T
Sbjct: 12 KLHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYGCVIG-VQRGRT 70
Query: 61 VDIRNSYAV---PHNESIDQVALDIEYQHNMLVAHQKVNPKEVIVGWYSTGLGVTGHSVL 117
V+I NS+ + P +++D+ L+ + + ++KV P I+GWYSTG +
Sbjct: 71 VEIFNSFELLYDPSTQTLDRSFLEKKQE-----LYKKVFPDFYILGWYSTGSDAEESDMH 125
Query: 118 IHEFFSREVTNPIHLTVDTEFANGVGTIKAYV-SNNLSLGDRQIAAQFQEIPLDLRMVEA 176
IH+ +P+++ ++ + + + + L + D F + VEA
Sbjct: 126 IHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSYTIETVEA 185
Query: 177 ERIGFDTLK-------ATTVEKIPSDLEGMEASMEHLLALXXXXXXXXXXXXEGRIAPDN 229
ERI D + + ++ + L G+ ++++ L + +G + DN
Sbjct: 186 ERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGDKSCDN 245
Query: 230 NIGKFISDAVGSLPKSPPAVFDKLVNDSLQDHLLSLYLSSITRTQLSLAE---KLNTA 284
++ + +S + LP F D LL YL+ IT ++ E K NTA
Sbjct: 246 SVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTA 303