Miyakogusa Predicted Gene

Lj2g3v2702340.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2702340.1 Non Chatacterized Hit- tr|K4DAY4|K4DAY4_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,38.62,2e-19,Homeodomain,Homeodomain;
Homeodomain-like,Homeodomain-like; Homeobox,Homeodomain;
HOMEOBOX_2,Homeodo,CUFF.39210.1
         (178 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3:...   159   1e-39
AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 | chr5:...   122   9e-29
AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 | chr3:...   104   3e-23
AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superf...   100   8e-22
AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superf...    97   5e-21
AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5:...    96   2e-20
AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 | chr1:...    95   2e-20
AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like super...    89   1e-18
AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 | chr2:1434...    74   6e-14
AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 |...    72   1e-13
AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobox...    64   6e-11
AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related ho...    64   6e-11
AT5G17810.2 | Symbols: WOX12 | WUSCHEL related homeobox 12 | chr...    55   2e-08
AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 | chr...    55   2e-08
AT3G03660.1 | Symbols: WOX11 | WUSCHEL related homeobox 11 | chr...    54   7e-08
AT1G20710.1 | Symbols: WOX10 | WUSCHEL related homeobox 10 | chr...    54   7e-08
AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 | chr...    54   7e-08

>AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 |
           chr3:3527606-3528263 FORWARD LENGTH=182
          Length = 182

 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 113/171 (66%), Gaps = 29/171 (16%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RWNPT EQ+K+LT+LF +GLRTP+TDQIQKIST+LSFYGKIESKNVFYWFQNHKARERQK
Sbjct: 24  RWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQNHKARERQK 83

Query: 85  RRKVTFDDKDFNVILRENSMSKNSSKQNYAQFYQVT-----EPERVIETLQLFPLNSFGE 139
           RRK++ D               +  + +    ++++     E E+VIETLQLFP+NSF +
Sbjct: 84  RRKISID------------FDHHHHQPSTRDVFEISEEDCQEEEKVIETLQLFPVNSFED 131

Query: 140 SESK--NLRVHANE-----CRDSAMFSY----LMGEQMDH-PPLDLRLSSL 178
           S SK   +R   N       R++   S+      G +M+H PPLDLRLS L
Sbjct: 132 SNSKVDKMRARGNNQYREYIRETTTTSFSPYSSCGAEMEHPPPLDLRLSFL 182


>AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 |
           chr5:1734487-1734855 FORWARD LENGTH=122
          Length = 122

 Score =  122 bits (307), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 61/84 (72%), Positives = 69/84 (82%), Gaps = 6/84 (7%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RWNPT EQVK+LT+LF +GLRTPSTDQIQKIS +LSFYGKIESKNVFYWFQNHKARERQK
Sbjct: 29  RWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQNHKARERQK 88

Query: 85  RRKVT---FD---DKDFNVILREN 102
            RK++   FD   D D +   R+N
Sbjct: 89  CRKISTVKFDHRQDTDLSKPRRDN 112


>AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 |
           chr3:6161155-6163183 REVERSE LENGTH=350
          Length = 350

 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 80/143 (55%), Gaps = 6/143 (4%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RWNPT +Q++VL EL+  G RTPS D IQ+I+ QL  YGKIE KNVFYWFQNHKARERQK
Sbjct: 76  RWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQK 135

Query: 85  RRKVTFDDKDFNVILRENSMSKNSSKQNYAQFYQVTEPERVI-----ETLQLFPLNSFGE 139
           RR+      +  V+   + +S +   +     Y+V + +  I     +T    P   +  
Sbjct: 136 RRRQMETGHEETVLSTASLVSNHGFDKKDPPGYKVEQVKNWICSVGCDTQPEKPSRDYHL 195

Query: 140 SESKNLRV-HANECRDSAMFSYL 161
            E  N+RV H   C      S+L
Sbjct: 196 EEPANIRVEHNARCGGDERRSFL 218


>AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like
          superfamily protein | chr2:12262115-12263286 FORWARD
          LENGTH=244
          Length = 244

 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 52/63 (82%)

Query: 25 RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
          RW PT EQ+ +L E++ SG+RTP+  QIQ+I+  L+FYG+IE KNVFYWFQNHKAR+RQK
Sbjct: 8  RWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67

Query: 85 RRK 87
           RK
Sbjct: 68 LRK 70


>AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like
           superfamily protein | chr2:7809100-7810671 REVERSE
           LENGTH=292
          Length = 292

 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 54/63 (85%), Gaps = 1/63 (1%)

Query: 25  RWNPTTEQVKVLTELF-SSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQ 83
           RW PTTEQ+K+L EL+ ++ +R+P+ DQIQKI+ +L  +GKIE KNVFYWFQNHKARERQ
Sbjct: 38  RWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQNHKARERQ 97

Query: 84  KRR 86
           K+R
Sbjct: 98  KKR 100


>AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 |
          chr5:23933408-23934627 REVERSE LENGTH=260
          Length = 260

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query: 25 RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
          RWNPT +Q+ +L  L+  G+RTPS DQIQ+I+ +L  YG IE KNVFYWFQNHKAR+RQK
Sbjct: 14 RWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQK 73

Query: 85 RRK 87
          +++
Sbjct: 74 QKQ 76


>AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 |
           chr1:17236903-17237953 REVERSE LENGTH=251
          Length = 251

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 50/63 (79%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RWNPT EQ+ +L  L+  G+RTP+  QI+ I+ QL  YGKIE KNVFYWFQNHKARERQK
Sbjct: 90  RWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKARERQK 149

Query: 85  RRK 87
           +++
Sbjct: 150 QKR 152


>AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like
           superfamily protein | chr2:224470-225997 REVERSE
           LENGTH=271
          Length = 271

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 46/55 (83%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKA 79
           RWNPT EQ+  L EL+ SG RTP+T+QIQ+I+++L  YG+IE KNVFYWFQNHKA
Sbjct: 61  RWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKA 115


>AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 |
           chr2:14341639-14343597 REVERSE LENGTH=378
          Length = 378

 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RWNP  EQ+++L  +F+SG+  P  ++I++I  QL  YG++   NVFYWFQN K+R + K
Sbjct: 55  RWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114

Query: 85  RR 86
            R
Sbjct: 115 LR 116


>AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 |
           chr5:18648921-18650698 FORWARD LENGTH=325
          Length = 325

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RWNP  EQ+++L  +F+SG   P  ++IQ+I  +L  YG+I   NVFYWFQN K+R + K
Sbjct: 55  RWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHK 114

Query: 85  RR 86
            R
Sbjct: 115 LR 116


>AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobox 14
           | chr1:7182558-7183866 FORWARD LENGTH=211
          Length = 211

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 46/65 (70%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RW PT+ Q+++L  ++  G  TP+  +I++I+T+LS +G+I   NV+ WFQN +AR ++K
Sbjct: 95  RWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRK 154

Query: 85  RRKVT 89
           + + T
Sbjct: 155 QPQTT 159


>AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related
           homeobox 13 | chr4:16875814-16877167 REVERSE LENGTH=268
          Length = 268

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 42/61 (68%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RW PT  Q+++L  +F  G  TPS  +I+ I+ +LS +G+I  +NV+ WFQN +AR ++K
Sbjct: 99  RWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRK 158

Query: 85  R 85
           +
Sbjct: 159 Q 159


>AT5G17810.2 | Symbols: WOX12 | WUSCHEL related homeobox 12 |
          chr5:5880576-5882602 REVERSE LENGTH=268
          Length = 268

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 25 RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQN 76
          RW+P  EQ+ +L  +F+SG   P  D+  +I   L  +G +   NVFYWFQN
Sbjct: 21 RWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQN 72


>AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 |
          chr5:5880576-5882602 REVERSE LENGTH=268
          Length = 268

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 25 RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQN 76
          RW+P  EQ+ +L  +F+SG   P  D+  +I   L  +G +   NVFYWFQN
Sbjct: 21 RWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQN 72


>AT3G03660.1 | Symbols: WOX11 | WUSCHEL related homeobox 11 |
          chr3:889515-892162 REVERSE LENGTH=268
          Length = 268

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 25 RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQN 76
          RW+P  EQ+ +L  +F SG+  P  ++  +I   L  +G +   NVFYWFQN
Sbjct: 33 RWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQN 84


>AT1G20710.1 | Symbols: WOX10 | WUSCHEL related homeobox 10 |
           chr1:7184485-7185267 FORWARD LENGTH=197
          Length = 197

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 41/58 (70%)

Query: 32  QVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVT 89
           Q+++L  ++  G  TP+  +I++I+ +LS +G+I  KNV++WFQN +AR ++K+   T
Sbjct: 86  QLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRRARSKRKQPPTT 143


>AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 |
          chr3:889515-892162 REVERSE LENGTH=297
          Length = 297

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 25 RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQN 76
          RW+P  EQ+ +L  +F SG+  P  ++  +I   L  +G +   NVFYWFQN
Sbjct: 33 RWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQN 84