Miyakogusa Predicted Gene

Lj2g3v2688020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2688020.1 Non Chatacterized Hit- tr|F6HK57|F6HK57_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,80,2e-18,ubiquitin,Ubiquitin; Ubiquitin-like,NULL; no
description,NULL,CUFF.39203.1
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G06599.1 | Symbols:  | ubiquitin family protein | chr4:366607...    87   3e-18

>AT4G06599.1 | Symbols:  | ubiquitin family protein |
           chr4:3666079-3667495 REVERSE LENGTH=340
          Length = 340

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 46/54 (85%)

Query: 48  SEEEMPLKVKWSGKDYTVRVCGDDTIVELKRRICELTNVLPIRQKFLYPKLGSK 101
           +EEE+ L VKW+GK+YTVR+C DD++ ELKRRIC LT VLP RQK LYPK+G+K
Sbjct: 20  TEEELTLTVKWNGKEYTVRICADDSVAELKRRICLLTTVLPKRQKLLYPKIGNK 73