Miyakogusa Predicted Gene

Lj2g3v2646170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2646170.1 Non Chatacterized Hit- tr|I1JMA9|I1JMA9_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,76.6,0.00000000000005,no description,Regulator of chromosome
condensation/beta-lactamase-inhibitor protein II;
RCC1_3,Regu,CUFF.39152.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55580.1 | Symbols:  | Regulator of chromosome condensation (...   199   8e-52
AT3G53830.1 | Symbols:  | Regulator of chromosome condensation (...   187   2e-48

>AT3G55580.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr3:20612766-20615730 FORWARD
           LENGTH=488
          Length = 488

 Score =  199 bits (505), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 101/145 (69%), Positives = 116/145 (80%), Gaps = 3/145 (2%)

Query: 12  VAKERMVYMWGYLPGALPQRTPLLTPVMVRAP-ASGYSWKDVCGGGCGFAMAISEPGKLI 70
           V  +R+VYMWGYLPGA PQR+PL++PV V+ P A   SWKDV GGGCGFAMA +E GKLI
Sbjct: 27  VVSQRVVYMWGYLPGASPQRSPLMSPVEVKIPPAVESSWKDVSGGGCGFAMATAESGKLI 86

Query: 71  TWGSTDDLGQSYVTSGKHGEIPEPFPLPTEAIV-KATAGWAHCVSVTDCGEVYTWGWKEC 129
           TWGSTDDLGQSYVTSGKHGE PEPFPLP E  V KA AGWAHCV+VT+  +VYTWGW+EC
Sbjct: 87  TWGSTDDLGQSYVTSGKHGETPEPFPLPPEVCVQKAEAGWAHCVAVTENQQVYTWGWREC 146

Query: 130 VPSGKVFGEPPTGVSPEGQSSFLTE 154
           +P+G+VFG+   G S E   SF TE
Sbjct: 147 IPTGRVFGQ-VDGDSCERNISFSTE 170


>AT3G53830.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr3:19940814-19943592 FORWARD
           LENGTH=472
          Length = 472

 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/138 (66%), Positives = 109/138 (78%), Gaps = 4/138 (2%)

Query: 14  KERMVYMWGYLPGALPQRTPLLTPVMVRAPAS---GYSWKDVCGGGCGFAMAISEPGKLI 70
           K  +VYM GYLPGA  +++P+L+PV VR  A+   G SWKDVCGGGCGFAMAISE GKLI
Sbjct: 15  KATVVYMSGYLPGAASEKSPILSPVPVRLSAAVHGGDSWKDVCGGGCGFAMAISEKGKLI 74

Query: 71  TWGSTDDLGQSYVTSGKHGEIPEPFPLPTEA-IVKATAGWAHCVSVTDCGEVYTWGWKEC 129
           TWGSTDD GQSYV SGKHGE PEPFPLPTEA +V+A++GWAHC  VT+ GE +TWGWKEC
Sbjct: 75  TWGSTDDEGQSYVASGKHGETPEPFPLPTEAPVVQASSGWAHCAVVTETGEAFTWGWKEC 134

Query: 130 VPSGKVFGEPPTGVSPEG 147
           +PS    G+  +G S +G
Sbjct: 135 IPSKDPVGKQQSGSSEQG 152