Miyakogusa Predicted Gene

Lj2g3v2624110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2624110.1 tr|D4N5G0|D4N5G0_SOYBN Alpha-form rubisco
activase OS=Glycine max GN=RCAalpha PE=2 SV=1,90.15,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; seg,NULL;
AAA,ATPase, AAA-type, core; SUB,CUFF.40164.1
         (475 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39730.1 | Symbols: RCA | rubisco activase | chr2:16570951-16...   803   0.0  
AT2G39730.2 | Symbols: RCA | rubisco activase | chr2:16571046-16...   739   0.0  
AT2G39730.3 | Symbols: RCA | rubisco activase | chr2:16571174-16...   738   0.0  
AT1G73110.1 | Symbols:  | P-loop containing nucleoside triphosph...   331   5e-91
AT5G43010.1 | Symbols: RPT4A | regulatory particle triple-A ATPa...    49   7e-06

>AT2G39730.1 | Symbols: RCA | rubisco activase |
           chr2:16570951-16573345 REVERSE LENGTH=474
          Length = 474

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/476 (79%), Positives = 420/476 (88%), Gaps = 3/476 (0%)

Query: 1   MAASVSTIGAVNGTPLSLNXXXXXXXXX-XXXFFGSSLRKVNSRLPNSKVSNGSFKIVAA 59
           MAA+VST+GA+N  PLSLN             F G  +  V+    ++K SNGSFK++A 
Sbjct: 1   MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA- 59

Query: 60  EIDESQQTDKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPQGAGTHYAVMSSYEYLSTG 119
            + E +QTD DRW+GLAYD SDDQQDITRGKGMVD +FQAP G GTH+AV+SSYEY+S G
Sbjct: 60  -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118

Query: 120 LRQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 179
           LRQYN DN MDGFYIAPAFMDKLVVHITKNF+TLPNIKVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178

Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
            AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238

Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDG 299
           GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKE+N RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298

Query: 300 RMEKFYWAPTRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVR 359
           RMEKFYWAPTR+DR+GVCKGIFRTD + +ED+V +VD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358

Query: 360 KWISGVGIETIGKKLVNSKEGPPVFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYLN 419
           K++  +G+E IGK+LVNS+EGPPVFEQP+MT  KL+EYGNMLV EQENVKRVQLA+ YL+
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418

Query: 420 EAALGDANEDSINRGTFYGKAAQQVNVPVPEGCTDPNAKNFDPTARSDDGTCLYTF 475
           +AALGDAN D+I RGTFYGK AQQVN+PVPEGCTDP A+NFDPTARSDDGTC+Y F
Sbjct: 419 QAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474


>AT2G39730.2 | Symbols: RCA | rubisco activase |
           chr2:16571046-16573345 REVERSE LENGTH=446
          Length = 446

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/444 (78%), Positives = 389/444 (87%), Gaps = 3/444 (0%)

Query: 1   MAASVSTIGAVNGTPLSLNXXXXXXXXX-XXXFFGSSLRKVNSRLPNSKVSNGSFKIVAA 59
           MAA+VST+GA+N  PLSLN             F G  +  V+    ++K SNGSFK++A 
Sbjct: 1   MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA- 59

Query: 60  EIDESQQTDKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPQGAGTHYAVMSSYEYLSTG 119
            + E +QTD DRW+GLAYD SDDQQDITRGKGMVD +FQAP G GTH+AV+SSYEY+S G
Sbjct: 60  -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118

Query: 120 LRQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 179
           LRQYN DN MDGFYIAPAFMDKLVVHITKNF+TLPNIKVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178

Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
            AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238

Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDG 299
           GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKE+N RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298

Query: 300 RMEKFYWAPTRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVR 359
           RMEKFYWAPTR+DR+GVCKGIFRTD + +ED+V +VD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358

Query: 360 KWISGVGIETIGKKLVNSKEGPPVFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYLN 419
           K++  +G+E IGK+LVNS+EGPPVFEQP+MT  KL+EYGNMLV EQENVKRVQLA+ YL+
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418

Query: 420 EAALGDANEDSINRGTFYGKAAQQ 443
           +AALGDAN D+I RGTFYGK  ++
Sbjct: 419 QAALGDANADAIGRGTFYGKTEEK 442


>AT2G39730.3 | Symbols: RCA | rubisco activase |
           chr2:16571174-16573345 REVERSE LENGTH=441
          Length = 441

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/440 (79%), Positives = 387/440 (87%), Gaps = 3/440 (0%)

Query: 1   MAASVSTIGAVNGTPLSLNXXXXXXXXX-XXXFFGSSLRKVNSRLPNSKVSNGSFKIVAA 59
           MAA+VST+GA+N  PLSLN             F G  +  V+    ++K SNGSFK++A 
Sbjct: 1   MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA- 59

Query: 60  EIDESQQTDKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPQGAGTHYAVMSSYEYLSTG 119
            + E +QTD DRW+GLAYD SDDQQDITRGKGMVD +FQAP G GTH+AV+SSYEY+S G
Sbjct: 60  -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118

Query: 120 LRQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 179
           LRQYN DN MDGFYIAPAFMDKLVVHITKNF+TLPNIKVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178

Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
            AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238

Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDG 299
           GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKE+N RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298

Query: 300 RMEKFYWAPTRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVR 359
           RMEKFYWAPTR+DR+GVCKGIFRTD + +ED+V +VD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358

Query: 360 KWISGVGIETIGKKLVNSKEGPPVFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYLN 419
           K++  +G+E IGK+LVNS+EGPPVFEQP+MT  KL+EYGNMLV EQENVKRVQLA+ YL+
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418

Query: 420 EAALGDANEDSINRGTFYGK 439
           +AALGDAN D+I RGTFYGK
Sbjct: 419 QAALGDANADAIGRGTFYGK 438


>AT1G73110.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr1:27494344-27496844
           REVERSE LENGTH=432
          Length = 432

 Score =  331 bits (849), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 164/312 (52%), Positives = 220/312 (70%), Gaps = 9/312 (2%)

Query: 113 YEYLSTGLRQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLP-NIKVPLILGIWGGKGQG 171
           ++Y     R  +F++    +YIAP+F+DK+ VHI KN++    NIK+PLILGIWGGKGQG
Sbjct: 119 FDYRQKATR--SFEHLQGDYYIAPSFLDKVAVHIVKNYLAPSLNIKIPLILGIWGGKGQG 176

Query: 172 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIND 230
           K+FQ EL+F  MG+ P++MSAGELES  AGEP +LIR RYR A+ +I+ +GKM  L IND
Sbjct: 177 KTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMIND 236

Query: 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNP-RVPIIVTGNDFS 289
           +DAG GR G  TQ TVNNQ+V  TLMN+ADNPT V +   + + D   RVP+IVTGNDFS
Sbjct: 237 IDAGLGRFG-ETQMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNRVPLIVTGNDFS 295

Query: 290 TLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGAL 349
           TLYAPLIR+GRMEKFYW PTR+D V +   ++  D +  +DV+ IVD FP Q++DF+GAL
Sbjct: 296 TLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGAL 355

Query: 350 RARVYDDEVRKWISGV-GIETIGKKLVNSKEGP--PVFEQPKMTLAKLLEYGNMLVQEQE 406
           R+R YD  + KW+    G+ET+GK L+  K+    P F  P+ T+  LLE G  L+ EQ+
Sbjct: 356 RSRTYDRSILKWVDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLINEQK 415

Query: 407 NVKRVQLADKYL 418
            +   +L+ +Y+
Sbjct: 416 LIMETKLSKEYM 427


>AT5G43010.1 | Symbols: RPT4A | regulatory particle triple-A ATPase
           4A | chr5:17248563-17251014 REVERSE LENGTH=399
          Length = 399

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)

Query: 156 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
           IK P  + ++G  G GK+     + + +  N + + +  +     GE A+LIR+ +  A 
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228

Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED 275
              ++ + C +F++++DA  GR    ++ T  ++ +  TLM + +     QL G  N   
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276

Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RVGVCK----GIFRTDNVPEE 329
             +V +I+  N    L   L+R GR+++    P  ++  R+ + K    GI +   +  E
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335

Query: 330 DVVKIVDTFPGQSI 343
            +VK+ + F G  +
Sbjct: 336 AIVKLAEGFNGADL 349