Miyakogusa Predicted Gene

Lj2g3v2599880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2599880.1 Non Chatacterized Hit- tr|K2GZJ7|K2GZJ7_9BACT
Uncharacterized protein OS=uncultured bacterium
(gcode,30.4,5e-19,FtsJ,Ribosomal RNA methyltransferase FtsJ domain;
S-adenosyl-L-methionine-dependent methyltransferas,CUFF.39135.1
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13830.1 | Symbols:  | FtsJ-like methyltransferase family pro...   317   4e-87
AT4G25730.1 | Symbols:  | FtsJ-like methyltransferase family pro...    78   6e-15
AT5G01230.1 | Symbols:  | S-adenosyl-L-methionine-dependent meth...    70   1e-12
AT5G01230.2 | Symbols:  | S-adenosyl-L-methionine-dependent meth...    56   2e-08

>AT5G13830.1 | Symbols:  | FtsJ-like methyltransferase family
           protein | chr5:4467363-4468487 FORWARD LENGTH=224
          Length = 224

 Score =  317 bits (813), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 159/239 (66%), Positives = 188/239 (78%), Gaps = 18/239 (7%)

Query: 1   MGASGAPDFYYKEAQRLGYVARSAFKLLQIQKHSNIIKSGSSVLDLGCAPGSWLQVACQS 60
           M  +G PDF+Y+EAQRLGYVARSAFKLLQIQK   +IK GSSVLDLGCAPG+WLQVACQS
Sbjct: 1   MSGAGVPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60

Query: 61  LGPLQHGGSVLGIDVKKVKVPPVHCDSRVHTIAADVMTLSKHQLRALSPKQKGFSVILSD 120
           LGPL+ GG V+G+D+KKVKVPP  CDSRV TIAADV+   + ++R LSP+Q GFSVILSD
Sbjct: 61  LGPLRSGGIVVGMDIKKVKVPP-QCDSRVQTIAADVLNFPRQKIRELSPQQLGFSVILSD 119

Query: 121 MCPSVSGVTTKDAALSVELGMRALDLAVGXXXXXXXXXXXXXXYIREEQSVDDPSGSDDK 180
           MC SVSG+TT+DAALS ELGMRALDLAVG                   QS +D  G  ++
Sbjct: 120 MCHSVSGITTRDAALSAELGMRALDLAVGQAAI--------------SQSPNDDDGGPNE 165

Query: 181 ---GVLRVGGNLIIKLLESEDSKEISQICKPLFRKSSWLRPKATRPSSREIYLICQGLK 236
              GVLR GG+L+IKLLESED+++ ++ICKP+F K+SWLRPKATRPSSREIYLICQG +
Sbjct: 166 SRPGVLRHGGHLVIKLLESEDAQDFARICKPIFNKASWLRPKATRPSSREIYLICQGFR 224


>AT4G25730.1 | Symbols:  | FtsJ-like methyltransferase family
           protein | chr4:13102906-13106718 REVERSE LENGTH=821
          Length = 821

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 45/232 (19%)

Query: 8   DFYYKEAQRLGYVARSAFKLLQIQKHSNIIKSGSSVLDLGCAPGSWLQVACQSLGPLQHG 67
           D YY+ A+  G+ +R+++KLLQ+    +++ S  +VLDL  APG W+QVA + + P+  G
Sbjct: 11  DKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVAVEKV-PV--G 67

Query: 68  GSVLGIDVKKVKVPPVH-CDSRVHTIAADVMTLSKHQLRALSPKQ--KGFSVILSDMCPS 124
             VLGID+  V + PV  C +    I     T  K +++ +  +     F+++L D  P+
Sbjct: 68  SLVLGIDL--VPILPVRGCVTMTQDI---TRTECKSKIKQVMEQHGVSAFNLVLHDGSPN 122

Query: 125 VSGVTTKDAALSVELGMRALDLAVGXXXXXXXXXXXXXXYIREEQSVDDPSGSDDKGVLR 184
           V G   ++A     L + ++ LA                                   L 
Sbjct: 123 VGGAWAQEAMSQNALVIDSVRLAT--------------------------------EFLA 150

Query: 185 VGGNLIIKLLESEDSKEISQICKPLFRKSSWLRPKATRPSSREIYLICQGLK 236
             GNL+ K+  S D   +      LF K    +P A+R +S E YL+  GLK
Sbjct: 151 RNGNLVTKVFRSRDYNSVLYCLGRLFEKVEVFKPPASRSASAETYLV--GLK 200


>AT5G01230.1 | Symbols:  | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr5:92789-95380 REVERSE LENGTH=309
          Length = 309

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 96/234 (41%), Gaps = 36/234 (15%)

Query: 8   DFYYKEAQRLGYVARSAFKLLQIQKHSNIIKSGSSVLDLGCAPGSWLQVACQSLG-PLQH 66
           D YY++A+  G+ ARSAFKLLQI +  NI +    V+DL  APGSW QV  + L  P + 
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLYLPAKS 69

Query: 67  GGSVLGID---VKKVKVPPVHCDSRVHTIAADVMTLSKHQLRALSPKQKGFSVILSDMCP 123
                  D   +  + + P+     V  +  D+      ++           +++ D  P
Sbjct: 70  SAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129

Query: 124 SVSGVTTKDAALSVELGMRALDLAVGXXXXXXXXXXXXXXYIREEQSVDDPSGSDDKGVL 183
            V+G+   D  +  +L +  L +                                   +L
Sbjct: 130 DVTGLHDMDEFVQSQLILAGLTIVT--------------------------------HIL 157

Query: 184 RVGGNLIIKLLESEDSKEISQICKPLFRKSSWLRPKATRPSSREIYLICQGLKP 237
           + GG  I K+   +D+  +    K  F   ++ +PK++R SS E + +C+   P
Sbjct: 158 KEGGKFIAKIFRGKDTSLLYCQLKLFFPTVTFAKPKSSRNSSIEAFAVCENYSP 211


>AT5G01230.2 | Symbols:  | S-adenosyl-L-methionine-dependent
          methyltransferases superfamily protein |
          chr5:94694-95380 REVERSE LENGTH=61
          Length = 61

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 33/48 (68%)

Query: 8  DFYYKEAQRLGYVARSAFKLLQIQKHSNIIKSGSSVLDLGCAPGSWLQ 55
          D YY++A+  G+ ARSAFKLLQI +  NI +    V+DL  APGSW Q
Sbjct: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ 57