Miyakogusa Predicted Gene

Lj2g3v2598830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2598830.1 Non Chatacterized Hit- tr|K4C5X0|K4C5X0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,50,2e-16,zf-XS,Zinc finger-XS domain; TRANSCRIPTION FACTOR
X1-LIKE,NULL; RIBONUCLEASE P PROTEIN SUBUNIT
P38-R,gene.Ljchr2_pseudomol_20120830.path1.gene6654.1
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48670.2 | Symbols: IDN2, RDM12 | XH/XS domain-containing pro...    87   1e-17
AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing pro...    87   1e-17
AT1G80790.1 | Symbols:  | XH/XS domain-containing protein | chr1...    80   1e-15
AT3G12550.2 | Symbols:  | XH/XS domain-containing protein | chr3...    77   1e-14
AT3G12550.1 | Symbols:  | XH/XS domain-containing protein | chr3...    77   1e-14
AT1G15910.1 | Symbols:  | XH/XS domain-containing protein | chr1...    68   5e-12
AT1G13790.1 | Symbols:  | XH/XS domain-containing protein | chr1...    66   1e-11
AT4G00380.1 | Symbols:  | XH/XS domain-containing protein | chr4...    63   1e-10

>AT3G48670.2 | Symbols: IDN2, RDM12 | XH/XS domain-containing
           protein | chr3:18031240-18033615 FORWARD LENGTH=647
          Length = 647

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 1/87 (1%)

Query: 21  YVVKSYEELRKGVHKVKTSYETFSCPFCPGRKQ-DYKYVELLNHASGVGRSSSDKRSAEE 79
           Y  K Y  L+ G  KV+ S + F CP+CP +K+  ++Y +LL HASGVG S+SDKRSA+E
Sbjct: 24  YGDKMYLNLKGGKLKVRLSPQAFICPYCPNKKKTSFQYKDLLQHASGVGNSNSDKRSAKE 83

Query: 80  KGNHLALVKYMEKDLMSMGGPSKPVDK 106
           K +HLALVKY+++DL      ++P  K
Sbjct: 84  KASHLALVKYLQQDLADSASEAEPSSK 110



 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 131 YVDASYEELKNGSRNVKTSDETLTCPYCP-KRKQDYMYRELLEHAYMVGXXXXXXXXXXX 189
           Y D  Y  LK G   V+ S +   CPYCP K+K  + Y++LL+HA  VG           
Sbjct: 24  YGDKMYLNLKGGKLKVRLSPQAFICPYCPNKKKTSFQYKDLLQHASGVGNSNSDKRSAKE 83

Query: 190 XXNHLALVKYLEKDL---MSMDGPSKVVDKGDRPV 221
             +HLALVKYL++DL    S   PS    K   P+
Sbjct: 84  KASHLALVKYLQQDLADSASEAEPSSKRQKNGNPI 118


>AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing
           protein | chr3:18031240-18033615 FORWARD LENGTH=647
          Length = 647

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 1/87 (1%)

Query: 21  YVVKSYEELRKGVHKVKTSYETFSCPFCPGRKQ-DYKYVELLNHASGVGRSSSDKRSAEE 79
           Y  K Y  L+ G  KV+ S + F CP+CP +K+  ++Y +LL HASGVG S+SDKRSA+E
Sbjct: 24  YGDKMYLNLKGGKLKVRLSPQAFICPYCPNKKKTSFQYKDLLQHASGVGNSNSDKRSAKE 83

Query: 80  KGNHLALVKYMEKDLMSMGGPSKPVDK 106
           K +HLALVKY+++DL      ++P  K
Sbjct: 84  KASHLALVKYLQQDLADSASEAEPSSK 110



 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 131 YVDASYEELKNGSRNVKTSDETLTCPYCP-KRKQDYMYRELLEHAYMVGXXXXXXXXXXX 189
           Y D  Y  LK G   V+ S +   CPYCP K+K  + Y++LL+HA  VG           
Sbjct: 24  YGDKMYLNLKGGKLKVRLSPQAFICPYCPNKKKTSFQYKDLLQHASGVGNSNSDKRSAKE 83

Query: 190 XXNHLALVKYLEKDL---MSMDGPSKVVDKGDRPV 221
             +HLALVKYL++DL    S   PS    K   P+
Sbjct: 84  KASHLALVKYLQQDLADSASEAEPSSKRQKNGNPI 118


>AT1G80790.1 | Symbols:  | XH/XS domain-containing protein |
           chr1:30360280-30362856 FORWARD LENGTH=634
          Length = 634

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 21  YVVKSYEELRKGVHKVKTSYETFSCPFCPGRK-QDYKYVELLNHASGVGRSSSDKRSAEE 79
           Y  K YE+L  G +KVK   +TF CPFC G+K Q YKY ELL HASGV + S+  RSA++
Sbjct: 19  YYEKPYEKLMNGDYKVKVK-DTFRCPFCAGKKKQHYKYKELLAHASGVAKGSAS-RSAKQ 76

Query: 80  KGNHLALVKYMEKDLMSMGGPSKP 103
           K NH AL KYME +L       +P
Sbjct: 77  KANHFALAKYMENELAGDADVPRP 100



 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 131 YVDASYEELKNGSRNVKTSDETLTCPYCP-KRKQDYMYRELLEHAYMVGXXXXXXXXXXX 189
           Y +  YE+L NG   VK  D T  CP+C  K+KQ Y Y+ELL HA  V            
Sbjct: 19  YYEKPYEKLMNGDYKVKVKD-TFRCPFCAGKKKQHYKYKELLAHASGVA-KGSASRSAKQ 76

Query: 190 XXNHLALVKYLEKDL 204
             NH AL KY+E +L
Sbjct: 77  KANHFALAKYMENEL 91


>AT3G12550.2 | Symbols:  | XH/XS domain-containing protein |
          chr3:3978669-3981372 FORWARD LENGTH=638
          Length = 638

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 26 YEELRKGVHKVKTSYETFSCPFCPGRKQDYK-YVELLNHASGVGRSSSDKRSAEEKGNHL 84
          Y++L+ G  +VK SY TF CP+CP  K+    YV++L HASGVG S S KRS  EK +H 
Sbjct: 13 YKKLKSGKLEVKVSYRTFLCPYCPDNKKKVGLYVDILQHASGVGNSQSKKRSLTEKASHR 72

Query: 85 ALVKYMEKDL 94
          AL KY+ KDL
Sbjct: 73 ALAKYLIKDL 82



 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 136 YEELKNGSRNVKTSDETLTCPYCPKRKQDY-MYRELLEHAYMVGXXXXXXXXXXXXXNHL 194
           Y++LK+G   VK S  T  CPYCP  K+   +Y ++L+HA  VG             +H 
Sbjct: 13  YKKLKSGKLEVKVSYRTFLCPYCPDNKKKVGLYVDILQHASGVGNSQSKKRSLTEKASHR 72

Query: 195 ALVKYLEKDL 204
           AL KYL KDL
Sbjct: 73  ALAKYLIKDL 82


>AT3G12550.1 | Symbols:  | XH/XS domain-containing protein |
          chr3:3978669-3981372 FORWARD LENGTH=638
          Length = 638

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 26 YEELRKGVHKVKTSYETFSCPFCPGRKQDYK-YVELLNHASGVGRSSSDKRSAEEKGNHL 84
          Y++L+ G  +VK SY TF CP+CP  K+    YV++L HASGVG S S KRS  EK +H 
Sbjct: 13 YKKLKSGKLEVKVSYRTFLCPYCPDNKKKVGLYVDILQHASGVGNSQSKKRSLTEKASHR 72

Query: 85 ALVKYMEKDL 94
          AL KY+ KDL
Sbjct: 73 ALAKYLIKDL 82



 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 136 YEELKNGSRNVKTSDETLTCPYCPKRKQDY-MYRELLEHAYMVGXXXXXXXXXXXXXNHL 194
           Y++LK+G   VK S  T  CPYCP  K+   +Y ++L+HA  VG             +H 
Sbjct: 13  YKKLKSGKLEVKVSYRTFLCPYCPDNKKKVGLYVDILQHASGVGNSQSKKRSLTEKASHR 72

Query: 195 ALVKYLEKDL 204
           AL KYL KDL
Sbjct: 73  ALAKYLIKDL 82


>AT1G15910.1 | Symbols:  | XH/XS domain-containing protein |
          chr1:5465951-5468723 FORWARD LENGTH=634
          Length = 634

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 26 YEELRKGVHKVKTSYETFSCPFCPGRK-QDYKYVELLNHASGVGRSSSDKRSAEEKGNHL 84
          Y  LR G +KVK + +   CPFC G+K QDYKY EL  HA+GV + S+  RSA +K NHL
Sbjct: 23 YRLLRDGTYKVKVNGQ-LRCPFCAGKKKQDYKYKELYAHATGVSKGSA-TRSALQKANHL 80

Query: 85 ALVKYMEKDL 94
          AL  ++E +L
Sbjct: 81 ALAMFLENEL 90



 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 131 YVDASYEELKNGSRNVKTSDETLTCPYCP-KRKQDYMYRELLEHAYMVGXXXXXXXXXXX 189
           Y +  Y  L++G+  VK + + L CP+C  K+KQDY Y+EL  HA  V            
Sbjct: 18  YSETPYRLLRDGTYKVKVNGQ-LRCPFCAGKKKQDYKYKELYAHATGVS-KGSATRSALQ 75

Query: 190 XXNHLALVKYLEKDL 204
             NHLAL  +LE +L
Sbjct: 76  KANHLALAMFLENEL 90


>AT1G13790.1 | Symbols:  | XH/XS domain-containing protein |
          chr1:4727438-4730229 FORWARD LENGTH=736
          Length = 736

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 26 YEELRKGVHKVKTSYETFSCPFC-PGRKQDYKYVELLNHASGVGRSSSDKRSAEEKGNHL 84
          Y E++ G  KVK S   F CPFC   RK+DY++ +LL HASG+G SS  K    +K  HL
Sbjct: 15 YSEMKDGTRKVKISESLFRCPFCYIDRKRDYQFDDLLRHASGIGGSSRTK-DGRDKARHL 73

Query: 85 ALVKYMEKDL 94
          AL +YM K L
Sbjct: 74 ALERYMRKYL 83



 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 136 YEELKNGSRNVKTSDETLTCPYC-PKRKQDYMYRELLEHAYMVGXXXXXXXXXXXXXNHL 194
           Y E+K+G+R VK S+    CP+C   RK+DY + +LL HA  +G              HL
Sbjct: 15  YSEMKDGTRKVKISESLFRCPFCYIDRKRDYQFDDLLRHASGIG-GSSRTKDGRDKARHL 73

Query: 195 ALVKYLEKDL 204
           AL +Y+ K L
Sbjct: 74  ALERYMRKYL 83


>AT4G00380.1 | Symbols:  | XH/XS domain-containing protein |
          chr4:167959-170448 FORWARD LENGTH=635
          Length = 635

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 38/53 (71%), Gaps = 2/53 (3%)

Query: 43 FSCPFCPGRK-QDYKYVELLNHASGVGRSSSDKRSAEEKGNHLALVKYMEKDL 94
            CPFC G+K QDYKY EL  HA+GV + S+  RSA +K NHLAL K++E DL
Sbjct: 40 LRCPFCVGKKKQDYKYKELHAHATGVSKGSA-TRSALQKSNHLALAKFLENDL 91