Miyakogusa Predicted Gene

Lj2g3v2586520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2586520.1 Non Chatacterized Hit- tr|B4FND7|B4FND7_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,51.14,3e-19,seg,NULL,CUFF.39134.1
         (178 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing fact...    55   3e-08

>AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing factor
           30 | chr3:20561024-20563502 FORWARD LENGTH=262
          Length = 262

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 30/32 (93%)

Query: 1   MNRQIFAGREITVVVASETRKRPEEMRHRTRS 32
           MNR+ FAGREITVVVASE+RKRPEEMR +TR+
Sbjct: 108 MNRRSFAGREITVVVASESRKRPEEMRVKTRT 139