Miyakogusa Predicted Gene

Lj2g3v2585500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2585500.1 tr|G7KBR0|G7KBR0_MEDTR Ribosomal RNA large
subunit methyltransferase N OS=Medicago truncatula
GN=MTR,84.28,0,Radical_SAM,Radical SAM; Fer4_14,NULL; no
description,Radical SAM, alpha/beta horseshoe; Radical
SAM,CUFF.39122.1
         (406 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39670.1 | Symbols:  | Radical SAM superfamily protein | chr2...   583   e-167
AT2G39670.2 | Symbols:  | Radical SAM superfamily protein | chr2...   575   e-164
AT3G19630.1 | Symbols:  | Radical SAM superfamily protein | chr3...   189   3e-48
AT1G60230.1 | Symbols:  | Radical SAM superfamily protein | chr1...   187   1e-47
AT1G50050.1 | Symbols:  | CAP (Cysteine-rich secretory proteins,...    59   4e-09

>AT2G39670.1 | Symbols:  | Radical SAM superfamily protein |
           chr2:16534303-16536986 FORWARD LENGTH=428
          Length = 428

 Score =  583 bits (1504), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 282/367 (76%), Positives = 333/367 (90%), Gaps = 2/367 (0%)

Query: 39  QVLLGLSEQDLRQLALDLGQQGFRGRQLYHLIYKRKIREVQEFIQLPQAFRNDLEEAGWK 98
            VL+G+SE +L++LA++LGQ+G+RG+QL+HLIYKRK+ +V++F  LP  FR  L + G+K
Sbjct: 62  HVLIGMSEPELQELAINLGQEGYRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGGFK 121

Query: 99  VGRSPIFKSVTAADGTVKLLLKLEDNRLIETVGIPV-DDDKGSGRLTACVSSQVGCPLRC 157
           VGRSPI+++VTA DGT+KLLLKLEDN LIETVGIPV DD+KG  RLTACVSSQVGCPLRC
Sbjct: 122 VGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQVGCPLRC 181

Query: 158 SFCATGKGGFSRNLQKHEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNLKAVLGAHQCLN 217
           SFCATGKGGFSRNLQ+HEI+EQVLAIE+VFK RVTNVVFMGMGEPMLNLK+VL AH+CLN
Sbjct: 182 SFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRVTNVVFMGMGEPMLNLKSVLDAHRCLN 241

Query: 218 KDVQIGQRMMTISTVGVPNTMKKLATHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLEAL 277
           KD++IGQRM+TISTVGVPNT+KKLA+HKLQSTLAVSLHAPNQ LRE IVPSAK+YPLEA+
Sbjct: 242 KDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLREKIVPSAKAYPLEAI 301

Query: 278 MKDCSEYFRETNRRVSFEYALLAGINDSVDHAVELAKLLREWGSGYHVNLIPFNPIEGSE 337
           MKDC +YF+ETNRRVSFEYALLAG+ND V+HAVELA+LLREWG  YHVNLIP+NPIEGSE
Sbjct: 302 MKDCRDYFQETNRRVSFEYALLAGVNDQVEHAVELAELLREWGKTYHVNLIPYNPIEGSE 361

Query: 338 YKRPYRKAVKAFSDALESSKITVSVRQTRGLDANAACGQLRNEFQKAPMATDSDNLESQL 397
           Y+RPY+KAV AF+ ALES KIT SVRQTRGLDA+AACGQLRN+FQK+P+ T++D+ ESQ 
Sbjct: 362 YQRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQLRNKFQKSPLLTETDSQESQ- 420

Query: 398 PNMELAA 404
           P+ E  A
Sbjct: 421 PDAEAVA 427


>AT2G39670.2 | Symbols:  | Radical SAM superfamily protein |
           chr2:16534303-16536986 FORWARD LENGTH=431
          Length = 431

 Score =  575 bits (1482), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 281/370 (75%), Positives = 332/370 (89%), Gaps = 5/370 (1%)

Query: 39  QVLLGLSEQDLRQLALDL---GQQGFRGRQLYHLIYKRKIREVQEFIQLPQAFRNDLEEA 95
            VL+G+SE +L++LA++L    Q+G+RG+QL+HLIYKRK+ +V++F  LP  FR  L + 
Sbjct: 62  HVLIGMSEPELQELAINLVLIFQEGYRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDG 121

Query: 96  GWKVGRSPIFKSVTAADGTVKLLLKLEDNRLIETVGIPV-DDDKGSGRLTACVSSQVGCP 154
           G+KVGRSPI+++VTA DGT+KLLLKLEDN LIETVGIPV DD+KG  RLTACVSSQVGCP
Sbjct: 122 GFKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQVGCP 181

Query: 155 LRCSFCATGKGGFSRNLQKHEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNLKAVLGAHQ 214
           LRCSFCATGKGGFSRNLQ+HEI+EQVLAIE+VFK RVTNVVFMGMGEPMLNLK+VL AH+
Sbjct: 182 LRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRVTNVVFMGMGEPMLNLKSVLDAHR 241

Query: 215 CLNKDVQIGQRMMTISTVGVPNTMKKLATHKLQSTLAVSLHAPNQKLRETIVPSAKSYPL 274
           CLNKD++IGQRM+TISTVGVPNT+KKLA+HKLQSTLAVSLHAPNQ LRE IVPSAK+YPL
Sbjct: 242 CLNKDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLREKIVPSAKAYPL 301

Query: 275 EALMKDCSEYFRETNRRVSFEYALLAGINDSVDHAVELAKLLREWGSGYHVNLIPFNPIE 334
           EA+MKDC +YF+ETNRRVSFEYALLAG+ND V+HAVELA+LLREWG  YHVNLIP+NPIE
Sbjct: 302 EAIMKDCRDYFQETNRRVSFEYALLAGVNDQVEHAVELAELLREWGKTYHVNLIPYNPIE 361

Query: 335 GSEYKRPYRKAVKAFSDALESSKITVSVRQTRGLDANAACGQLRNEFQKAPMATDSDNLE 394
           GSEY+RPY+KAV AF+ ALES KIT SVRQTRGLDA+AACGQLRN+FQK+P+ T++D+ E
Sbjct: 362 GSEYQRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQLRNKFQKSPLLTETDSQE 421

Query: 395 SQLPNMELAA 404
           SQ P+ E  A
Sbjct: 422 SQ-PDAEAVA 430


>AT3G19630.1 | Symbols:  | Radical SAM superfamily protein |
           chr3:6818676-6820674 REVERSE LENGTH=372
          Length = 372

 Score =  189 bits (480), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 174/302 (57%), Gaps = 20/302 (6%)

Query: 112 DGTV-KLLLKLEDNRLIETVGIPVDDD---------KGSGRLTACVSSQVGCPLRCSFCA 161
           DGT  KLL+KL++   +E V +  D            G  R T C+SSQVGC + C+FCA
Sbjct: 74  DGTTSKLLIKLQNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQVGCKMGCTFCA 133

Query: 162 TGKGGFSRNLQKHEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNLKAVLGAHQC-LNKDV 220
           TG  GF  NL   EIVEQ++    +   R  N+VFMGMGEP+ N  AV+ A +  LN+  
Sbjct: 134 TGTMGFKSNLTSGEIVEQLVHASRIADIR--NIVFMGMGEPLNNYNAVVEAVRVMLNQPF 191

Query: 221 QIGQRMMTISTVGVPNTMKKLATHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLEALMKD 280
           Q+  + +TISTVG+ + + KL       +LAVSLHAP Q++R  I+P+A+++PL+ LM  
Sbjct: 192 QLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDA 251

Query: 281 CSEYFRETNRRVSFEYALLAGINDSVDHAVELAKLLREWGSGYHVNLIPFNPI-EGSEYK 339
              + + + +++  EY +L G+ND   HA  L +LL+ +     +NLIPFNPI   S+++
Sbjct: 252 LQTFQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLKTF--QVVINLIPFNPIGSTSQFE 309

Query: 340 RPYRKAVKAFSDAL-ESSKITVSVRQTRGLDANAACGQL---RNEFQKAPMATDSDNLES 395
               + V  F   L E+ KI  ++R+  G D + ACGQL   + + +K P   +  ++E 
Sbjct: 310 TSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTPGTVELRDIED 369

Query: 396 QL 397
            L
Sbjct: 370 LL 371


>AT1G60230.1 | Symbols:  | Radical SAM superfamily protein |
           chr1:22212223-22214346 REVERSE LENGTH=458
          Length = 458

 Score =  187 bits (475), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 186/357 (52%), Gaps = 24/357 (6%)

Query: 33  RTISQPQVLLGLSEQDLRQLALDLGQQGFRGRQ---LYHLIYKRKI--REVQEFIQLPQA 87
           R  +Q  VL G++   L++    +   GFR  Q   L+  +YK  I    V E   L + 
Sbjct: 89  RDDNQKVVLKGMTYASLQEW---VQSHGFRPGQALMLWKRLYKDNIWANNVDELEGLNKD 145

Query: 88  FRNDLEEAGWKVGRSPIFKSV-TAADGTVKLLLKLEDNRLIETVGIPVDDDKGSGRLTAC 146
            +  + E       S  FK + +A+DGT K+L  L+D  +IETV IP D     GR T C
Sbjct: 146 LKRMISEHAEFGALS--FKDIRSASDGTRKILFTLDDGLVIETVVIPCD----RGRTTVC 199

Query: 147 VSSQVGCPLRCSFCATGKGGFSRNLQKHEIVEQVLAIEEVFKRRV---TNVVFMGMGEPM 203
           VSSQVGC + C FC TG+ G  RNL   EIVEQ +    +    V   TNVVFMGMGEP 
Sbjct: 200 VSSQVGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGSITNVVFMGMGEPF 259

Query: 204 LNLKAVLGAHQCL--NKDVQIGQRMMTISTVGVPNTMKKLATHKLQSTLAVSLHAPNQKL 261
            N+  V+ A   +     +    R +T+ST G+   +K+         LAVSL+A   ++
Sbjct: 260 HNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRES-NCALAVSLNATTDEV 318

Query: 262 RETIVPSAKSYPLEALMKDCSEYFRETNR-RVSFEYALLAGINDSVDHAVELAKLLREWG 320
           R  I+P  + Y L  L++   E     ++ +V FEY +LAG+NDS+D A  L +L++  G
Sbjct: 319 RNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARRLVELVQ--G 376

Query: 321 SGYHVNLIPFNPIEGSEYKRPYRKAVKAFSDALESSKITVSVRQTRGLDANAACGQL 377
               +NLI FNP  GS++ +     +  F + L     TV +R +RG D  AACGQL
Sbjct: 377 IPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAACGQL 433


>AT1G50050.1 | Symbols:  | CAP (Cysteine-rich secretory proteins,
           Antigen 5, and Pathogenesis-related 1 protein)
           superfamily protein | chr1:18546165-18549046 FORWARD
           LENGTH=226
          Length = 226

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 32/36 (88%)

Query: 350 SDALESSKITVSVRQTRGLDANAACGQLRNEFQKAP 385
           S AL+S KIT SVRQTRGL A+AACGQLRN+FQK+P
Sbjct: 153 SAALKSRKITASVRQTRGLGASAACGQLRNKFQKSP 188