Miyakogusa Predicted Gene

Lj2g3v2572170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2572170.1 Non Chatacterized Hit- tr|I1I6P9|I1I6P9_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,40.15,0.000000000000002,seg,NULL; no description,Double-stranded
RNA-binding-like; dsRNA-binding domain-like,NULL;
dsrm,Doub,CUFF.39107.1
         (295 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like su...    58   9e-09
AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993...    48   7e-06
AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993...    48   7e-06
AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protei...    48   9e-06
AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protei...    48   9e-06

>AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like
           superfamily protein | chr1:3137960-3140118 REVERSE
           LENGTH=419
          Length = 419

 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 15/106 (14%)

Query: 56  KVAEEEAARLAVDSLTRNITDEGHSLLGEIFS-------LCKAIVNEYAAKLNLQIPTYN 108
           K AE+ AA +A+  L ++      S L +  S       LCK ++ EYA K+N  IP Y 
Sbjct: 68  KAAEQSAAEVALRELAKS------SELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQ 121

Query: 109 T--VQQEGPLPIFICSLVFDGSTYVGEAAKTKKDAEHLAARAVILS 152
              V+  G +  F C++   G  Y G A +TKKDAE  A R  +L+
Sbjct: 122 CQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLA 167


>AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 |
           chr3:9930460-9931714 REVERSE LENGTH=359
          Length = 359

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 18/132 (13%)

Query: 37  TSDMPDHKDKEVAGPVSHGKV------------AEEEAARLAVDSLTRNITDEGHSLLGE 84
           T + PDH  +  A    +G++            AE  AA +A+ +L+        SL   
Sbjct: 23  TREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAAEVALSALSSK--GPSKSLTAR 80

Query: 85  IFS---LCKAIVNEYAAKLNLQIPTYNTVQQ-EGPLPIFICSLVFDGSTYVGEAAKTKKD 140
           +     + K ++ E A +  L +P Y +V+   G +P F C++   G ++ GE+AKTKK 
Sbjct: 81  VLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGESAKTKKQ 140

Query: 141 AEHLAARAVILS 152
           AE  AA A   S
Sbjct: 141 AEKNAAIAAWFS 152


>AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 |
           chr3:9930460-9931714 REVERSE LENGTH=359
          Length = 359

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 18/132 (13%)

Query: 37  TSDMPDHKDKEVAGPVSHGKV------------AEEEAARLAVDSLTRNITDEGHSLLGE 84
           T + PDH  +  A    +G++            AE  AA +A+ +L+        SL   
Sbjct: 23  TREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAAEVALSALSSK--GPSKSLTAR 80

Query: 85  IFS---LCKAIVNEYAAKLNLQIPTYNTVQQ-EGPLPIFICSLVFDGSTYVGEAAKTKKD 140
           +     + K ++ E A +  L +P Y +V+   G +P F C++   G ++ GE+AKTKK 
Sbjct: 81  VLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGESAKTKKQ 140

Query: 141 AEHLAARAVILS 152
           AE  AA A   S
Sbjct: 141 AEKNAAIAAWFS 152


>AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
           | chr3:23225749-23227163 REVERSE LENGTH=355
          Length = 355

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 58/113 (51%), Gaps = 14/113 (12%)

Query: 56  KVAEEEAARLAVDSLTRNITDEGHSLLGEIFSLCKAIVNEYAAKLNLQIPTYNTVQQEGP 115
           K AE  AA++AV SLT   + EG      I    K ++ E A K +  +P Y T    GP
Sbjct: 57  KSAEHAAAKIAVASLTPQ-SPEG------IDVAYKNLLQEIAQKESSLLPFYATATS-GP 108

Query: 116 --LPIFICSLVFDGSTYVGEAAKTKKDAEHLAARAVILS-KLGNS---GSETI 162
              P F  ++ F G  + GE AKTKK AE  AA+   +S K GNS   GS T+
Sbjct: 109 SHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTL 161


>AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
           | chr3:23225749-23227163 REVERSE LENGTH=355
          Length = 355

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 58/113 (51%), Gaps = 14/113 (12%)

Query: 56  KVAEEEAARLAVDSLTRNITDEGHSLLGEIFSLCKAIVNEYAAKLNLQIPTYNTVQQEGP 115
           K AE  AA++AV SLT   + EG      I    K ++ E A K +  +P Y T    GP
Sbjct: 57  KSAEHAAAKIAVASLTPQ-SPEG------IDVAYKNLLQEIAQKESSLLPFYATATS-GP 108

Query: 116 --LPIFICSLVFDGSTYVGEAAKTKKDAEHLAARAVILS-KLGNS---GSETI 162
              P F  ++ F G  + GE AKTKK AE  AA+   +S K GNS   GS T+
Sbjct: 109 SHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTL 161