Miyakogusa Predicted Gene

Lj2g3v2560080.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2560080.1 tr|Q5Z6N0|Q5Z6N0_ORYSJ Os06g0266800 protein
OS=Oryza sativa subsp. japonica GN=OJ1001_B06.38 PE=4
SV,75,2e-19,GASA,Gibberellin regulated protein,CUFF.39092.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74670.1 | Symbols:  | Gibberellin-regulated family protein |...   115   4e-27
AT3G02885.1 | Symbols: GASA5 | GAST1 protein homolog 5 | chr3:63...    98   1e-21
AT5G15230.1 | Symbols: GASA4 | GAST1 protein homolog 4 | chr5:49...    98   1e-21
AT2G30810.1 | Symbols:  | Gibberellin-regulated family protein |...    93   4e-20
AT5G15230.2 | Symbols: GASA4 | GAST1 protein homolog 4 | chr5:49...    93   4e-20
AT3G10185.1 | Symbols:  | Gibberellin-regulated family protein |...    83   3e-17
AT2G39540.1 | Symbols:  | Gibberellin-regulated family protein |...    71   2e-13
AT1G10588.1 | Symbols:  | Gibberellin-regulated family protein |...    68   1e-12
AT1G10588.2 | Symbols:  | Gibberellin-regulated family protein |...    67   4e-12
AT5G59845.1 | Symbols:  | Gibberellin-regulated family protein |...    63   4e-11
AT1G22690.3 | Symbols:  | Gibberellin-regulated family protein |...    62   6e-11
AT1G22690.2 | Symbols:  | Gibberellin-regulated family protein |...    62   6e-11
AT1G22690.1 | Symbols:  | Gibberellin-regulated family protein |...    62   6e-11
AT4G09600.1 | Symbols: GASA3 | GAST1 protein homolog 3 | chr4:60...    61   2e-10
AT5G14920.1 | Symbols:  | Gibberellin-regulated family protein |...    61   2e-10
AT2G18420.1 | Symbols:  | Gibberellin-regulated family protein |...    58   1e-09
AT2G14900.1 | Symbols:  | Gibberellin-regulated family protein |...    57   2e-09
AT1G75750.1 | Symbols: GASA1 | GAST1 protein homolog 1 | chr1:28...    54   3e-08
AT1G75750.2 | Symbols: GASA1 | GAST1 protein homolog 1 | chr1:28...    54   3e-08
AT4G09610.1 | Symbols: GASA2 | GAST1 protein homolog 2 | chr4:60...    47   2e-06

>AT1G74670.1 | Symbols:  | Gibberellin-regulated family protein |
           chr1:28053378-28053893 FORWARD LENGTH=101
          Length = 101

 Score =  115 bits (289), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 68/96 (70%), Gaps = 6/96 (6%)

Query: 7   SSFLIAISLLVLV--TFSNVAE----AYGSAKLRPSDCKPKCTYRCSATSHKKPCMFFCQ 60
           +SFL+   L   V  T S  AE    +YG   L+   C  +CT RCS T + KPCMFFCQ
Sbjct: 6   TSFLLLTILFTFVCLTMSKEAEYHPESYGPGSLKSYQCGGQCTRRCSNTKYHKPCMFFCQ 65

Query: 61  KCCAKCLCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
           KCCAKCLCVPPG YGNK+VCPCYN+WKT++GGPKCP
Sbjct: 66  KCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101


>AT3G02885.1 | Symbols: GASA5 | GAST1 protein homolog 5 |
          chr3:638323-639011 REVERSE LENGTH=97
          Length = 97

 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 59/73 (80%)

Query: 24 VAEAYGSAKLRPSDCKPKCTYRCSATSHKKPCMFFCQKCCAKCLCVPPGVYGNKEVCPCY 83
          V  A G  KL+P  C  KC++RCSATSHKKPCMFFC KCC KCLCVPPG +GNK+ CPCY
Sbjct: 25 VQAARGGGKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCY 84

Query: 84 NSWKTKEGGPKCP 96
          N+WKTKEG PKCP
Sbjct: 85 NNWKTKEGRPKCP 97


>AT5G15230.1 | Symbols: GASA4 | GAST1 protein homolog 4 |
           chr5:4945017-4946025 FORWARD LENGTH=106
          Length = 106

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 60/97 (61%), Gaps = 9/97 (9%)

Query: 9   FLIAISLLVLVTF------SNV---AEAYGSAKLRPSDCKPKCTYRCSATSHKKPCMFFC 59
            L  I L +L T       SNV    + YG   L+ + C  +C  RC  T + K C+ FC
Sbjct: 10  LLTLIVLFMLQTMVMASSGSNVKWSQKRYGPGSLKRTQCPSECDRRCKKTQYHKACITFC 69

Query: 60  QKCCAKCLCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
            KCC KCLCVPPG YGNK+VC CYN+WKT+EGGPKCP
Sbjct: 70  NKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106


>AT2G30810.1 | Symbols:  | Gibberellin-regulated family protein |
           chr2:13127945-13128630 REVERSE LENGTH=106
          Length = 106

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 65/100 (65%), Gaps = 13/100 (13%)

Query: 9   FLIAISLLVLVTFSNVAEAY------------GSAKLRPSDCKPKCTYRCSATSHKKPCM 56
           F+I+ SLL    FSN  E              G   L+P +C   C YRCSATSH+KPC+
Sbjct: 8   FVIS-SLLFATQFSNGDELESQAQAPAIHKNGGEGSLKPEECPKACEYRCSATSHRKPCL 66

Query: 57  FFCQKCCAKCLCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
           FFC KCC KCLCVP G YG+KE CPCYN+W TKEGGPKCP
Sbjct: 67  FFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106


>AT5G15230.2 | Symbols: GASA4 | GAST1 protein homolog 4 |
          chr5:4945286-4946025 FORWARD LENGTH=83
          Length = 83

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 51/72 (70%)

Query: 25 AEAYGSAKLRPSDCKPKCTYRCSATSHKKPCMFFCQKCCAKCLCVPPGVYGNKEVCPCYN 84
           + YG   L+ + C  +C  RC  T + K C+ FC KCC KCLCVPPG YGNK+VC CYN
Sbjct: 12 QKRYGPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYN 71

Query: 85 SWKTKEGGPKCP 96
          +WKT+EGGPKCP
Sbjct: 72 NWKTQEGGPKCP 83


>AT3G10185.1 | Symbols:  | Gibberellin-regulated family protein |
           chr3:3145579-3146199 FORWARD LENGTH=103
          Length = 103

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 51/60 (85%)

Query: 37  DCKPKCTYRCSATSHKKPCMFFCQKCCAKCLCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
           +C P+C  RCS T +KKPC+FFC KCC KCLCVPPG YGNK+VCPCYN+WKTK GGPKCP
Sbjct: 44  ECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103


>AT2G39540.1 | Symbols:  | Gibberellin-regulated family protein |
          chr2:16500866-16501241 FORWARD LENGTH=87
          Length = 87

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 10 LIAISLLVLVTFSNVAEAYGSAKLRPSDCKPKCTYRCSATSHKKPCMFFCQKCCAKCLCV 69
             ISLL+  +FS ++ A        S C  KC  RCS     + C+ +C  CC KC CV
Sbjct: 8  FFIISLLLTSSFSVLSSA-------DSSCGGKCNVRCSKAGQHEECLKYCNICCQKCNCV 60

Query: 70 PPGVYGNKEVCPCYNSWKTKEGGPKCP 96
          P G +G+K+ CPCY   K  +GG KCP
Sbjct: 61 PSGTFGHKDECPCYRDMKNSKGGSKCP 87


>AT1G10588.1 | Symbols:  | Gibberellin-regulated family protein |
          chr1:3501276-3501655 FORWARD LENGTH=90
          Length = 90

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 10 LIAISLLVLVTFSNVAEAYGSAKLRPSDCKPKCTYRCS-ATSHKKPCMFFCQKCCAKCLC 68
             ISLL+  +F  ++ A  SA      C  KC+ RCS A    + C+  C  CC KC C
Sbjct: 9  FFIISLLLTSSFYVLSSADSSA------CGGKCSVRCSKADRTHEECLEDCDICCQKCNC 62

Query: 69 VPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
          VP G YGNK+ CPCY   K  +GG KCP
Sbjct: 63 VPSGTYGNKDECPCYRDMKNSKGGSKCP 90


>AT1G10588.2 | Symbols:  | Gibberellin-regulated family protein |
          chr1:3501276-3501655 FORWARD LENGTH=89
          Length = 89

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 10 LIAISLLVLVTFSNVAEAYGSAKLRPSDCKPKCTYRCS-ATSHKKPCMFFCQKCCAKCLC 68
             ISLL+  +F  ++ A        S C  KC+ RCS A    + C+  C  CC KC C
Sbjct: 9  FFIISLLLTSSFYVLSSA-------DSSCGGKCSVRCSKADRTHEECLEDCDICCQKCNC 61

Query: 69 VPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
          VP G YGNK+ CPCY   K  +GG KCP
Sbjct: 62 VPSGTYGNKDECPCYRDMKNSKGGSKCP 89


>AT5G59845.1 | Symbols:  | Gibberellin-regulated family protein |
          chr5:24111443-24111808 FORWARD LENGTH=89
          Length = 89

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 8  SFLIAISLLVLVTFSNVAEAYGSAKLRPSDCKPKCTYRCSATSHKKPCMFFCQKCCAKC- 66
          S LI  SL +L T  +            S C  KC  RCS    +  C+ +C  CC KC 
Sbjct: 12 SLLITSSLFILSTADS------------SPCGGKCNVRCSKAGRQDRCLKYCNICCEKCN 59

Query: 67 LCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
           CVP G YGNK+ CPCY   K  +G  KCP
Sbjct: 60 YCVPSGTYGNKDECPCYRDMKNSKGTSKCP 89


>AT1G22690.3 | Symbols:  | Gibberellin-regulated family protein |
           chr1:8027328-8027961 FORWARD LENGTH=119
          Length = 119

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 34/60 (56%)

Query: 37  DCKPKCTYRCSATSHKKPCMFFCQKCCAKCLCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
           +C   C  RCS TS KK C   C  CCAKC CVPPG  GN   CPCY S +T     KCP
Sbjct: 60  NCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKCP 119


>AT1G22690.2 | Symbols:  | Gibberellin-regulated family protein |
           chr1:8027328-8027961 FORWARD LENGTH=119
          Length = 119

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 34/60 (56%)

Query: 37  DCKPKCTYRCSATSHKKPCMFFCQKCCAKCLCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
           +C   C  RCS TS KK C   C  CCAKC CVPPG  GN   CPCY S +T     KCP
Sbjct: 60  NCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKCP 119


>AT1G22690.1 | Symbols:  | Gibberellin-regulated family protein |
           chr1:8027328-8027961 FORWARD LENGTH=119
          Length = 119

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 34/60 (56%)

Query: 37  DCKPKCTYRCSATSHKKPCMFFCQKCCAKCLCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
           +C   C  RCS TS KK C   C  CCAKC CVPPG  GN   CPCY S +T     KCP
Sbjct: 60  NCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKCP 119


>AT4G09600.1 | Symbols: GASA3 | GAST1 protein homolog 3 |
          chr4:6073014-6073516 REVERSE LENGTH=99
          Length = 99

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 35/60 (58%)

Query: 37 DCKPKCTYRCSATSHKKPCMFFCQKCCAKCLCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
          DC  +C  RCS +S    C+  C  CC +C CVPPG  GN  +CPCY S  T+ G  KCP
Sbjct: 40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99


>AT5G14920.1 | Symbols:  | Gibberellin-regulated family protein |
           chr5:4826598-4827761 FORWARD LENGTH=275
          Length = 275

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 37  DCKPKCTYRCSATSHKKPCMFFCQKCCAKCLCVPPGVYGNKEVC-PCYNSWKTKEGGPKC 95
           DC P C  RC   S K  CM  C  CC +C CVPPG YGNKE C  CY + KT+ G  KC
Sbjct: 215 DCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSKC 274

Query: 96  P 96
           P
Sbjct: 275 P 275


>AT2G18420.1 | Symbols:  | Gibberellin-regulated family protein |
          chr2:7993861-7994334 FORWARD LENGTH=94
          Length = 94

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 33/60 (55%)

Query: 37 DCKPKCTYRCSATSHKKPCMFFCQKCCAKCLCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
          DC  +C  RCS +S    C   C  CCA+C CV PG  GN + CPCY S  T  G  KCP
Sbjct: 35 DCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94


>AT2G14900.1 | Symbols:  | Gibberellin-regulated family protein |
           chr2:6404210-6405043 FORWARD LENGTH=108
          Length = 108

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 11/85 (12%)

Query: 23  NVAEAYGSAKLRPSD-----------CKPKCTYRCSATSHKKPCMFFCQKCCAKCLCVPP 71
            +++A+GS  + P+            C  KC  RC     K  C+ +C  CC  C CVP 
Sbjct: 24  TISDAFGSGAVAPAPQSKDGPALEKWCGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPS 83

Query: 72  GVYGNKEVCPCYNSWKTKEGGPKCP 96
           G YGNK  C CY    + +G PKCP
Sbjct: 84  GTYGNKHECACYRDKLSSKGTPKCP 108


>AT1G75750.1 | Symbols: GASA1 | GAST1 protein homolog 1 |
          chr1:28441813-28442284 REVERSE LENGTH=98
          Length = 98

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 31/60 (51%)

Query: 37 DCKPKCTYRCSATSHKKPCMFFCQKCCAKCLCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
          DC   C  RC  +   + C   C  CC +C CVPPG YGN + C CY S  T  G  KCP
Sbjct: 39 DCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98


>AT1G75750.2 | Symbols: GASA1 | GAST1 protein homolog 1 |
          chr1:28441813-28442284 REVERSE LENGTH=97
          Length = 97

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 31/60 (51%)

Query: 37 DCKPKCTYRCSATSHKKPCMFFCQKCCAKCLCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
          DC   C  RC  +   + C   C  CC +C CVPPG YGN + C CY S  T  G  KCP
Sbjct: 38 DCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 97


>AT4G09610.1 | Symbols: GASA2 | GAST1 protein homolog 2 |
          chr4:6074927-6075573 REVERSE LENGTH=99
          Length = 99

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 36/60 (60%)

Query: 37 DCKPKCTYRCSATSHKKPCMFFCQKCCAKCLCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96
          DC  +C  RCS +S  K C+  C  CC++C CVPPG  GN  +CPCY S  T  G  KCP
Sbjct: 40 DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99