Miyakogusa Predicted Gene

Lj2g3v2560000.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2560000.1 Non Chatacterized Hit- tr|A5BLU3|A5BLU3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,39.09,2e-19,seg,NULL; "Winged helix" DNA-binding domain,NULL;
H15,Histone H1/H5; Linker_histone,Histone H1/H5; A,CUFF.39083.1
         (177 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14900.1 | Symbols: HMGA | high mobility group A | chr1:51386...   102   2e-22
AT3G18035.1 | Symbols: HON4 | winged-helix DNA-binding transcrip...    65   3e-11
AT1G48620.1 | Symbols: HON5 | high mobility group A5 | chr1:1797...    62   2e-10
AT2G30620.2 | Symbols:  | winged-helix DNA-binding transcription...    52   2e-07
AT2G30620.1 | Symbols:  | winged-helix DNA-binding transcription...    52   2e-07
AT5G08780.1 | Symbols:  | winged-helix DNA-binding transcription...    49   1e-06

>AT1G14900.1 | Symbols: HMGA | high mobility group A |
          chr1:5138665-5139353 REVERSE LENGTH=204
          Length = 204

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 57/72 (79%)

Query: 11 SLPPYPEMIMEALESLNKPNGSNKSAISSYIESNHGELPETHATLLILHLNQMKESGELV 70
          SLPPYP+MIMEA+ESLN  NG NK+ I+ +IES    LP +H TLL  HLNQMK++G+L+
Sbjct: 22 SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71 FLNNNYMKPDPN 82
           + NNYMKPDP+
Sbjct: 82 MVKNNYMKPDPD 93


>AT3G18035.1 | Symbols: HON4 | winged-helix DNA-binding
           transcription factor family protein |
           chr3:6169384-6171558 REVERSE LENGTH=480
          Length = 480

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 40/64 (62%)

Query: 13  PPYPEMIMEALESLNKPNGSNKSAISSYIESNHGELPETHATLLILHLNQMKESGELVFL 72
           PPY EMI  A+ +LN+P+GS+K AIS YIE  +  L   HA LL  HL  +K SG L  +
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 73  NNNY 76
             +Y
Sbjct: 126 KKSY 129


>AT1G48620.1 | Symbols: HON5 | high mobility group A5 |
           chr1:17974148-17976301 REVERSE LENGTH=479
          Length = 479

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 15  YPEMIMEALESLNKPNGSNKSAISSYIESNHGELPETHATLLILHLNQMKESGELVFLNN 74
           Y +MI  A+ +LN+P+GS+K AIS YIE  +  +P  H  LL  HL  +K SG LV +  
Sbjct: 78  YSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMVKK 137

Query: 75  NY 76
           +Y
Sbjct: 138 SY 139


>AT2G30620.2 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr2:13045360-13046267 FORWARD
           LENGTH=202
          Length = 202

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%)

Query: 10  SSLPPYPEMIMEALESLNKPNGSNKSAISSYIESNHGELPETHATLLILHLNQMKESGEL 69
           SS P Y EMI +A+ +L +  GS++ AI  +IE  H  LP T   LL+++L ++  S +L
Sbjct: 60  SSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKL 119

Query: 70  VFLNNNYMKPD 80
           V +  ++  P 
Sbjct: 120 VKVKASFKIPS 130


>AT2G30620.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr2:13045360-13046267 FORWARD
           LENGTH=273
          Length = 273

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%)

Query: 10  SSLPPYPEMIMEALESLNKPNGSNKSAISSYIESNHGELPETHATLLILHLNQMKESGEL 69
           SS P Y EMI +A+ +L +  GS++ AI  +IE  H  LP T   LL+++L ++  S +L
Sbjct: 60  SSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKL 119

Query: 70  VFLNNNYMKPD 80
           V +  ++  P 
Sbjct: 120 VKVKASFKIPS 130


>AT5G08780.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr5:2856782-2858810 FORWARD
           LENGTH=457
          Length = 457

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 13  PPYPEMIMEALESLNKPNGSNKSAISSYIESNHGELPETHATLLILHLNQMKESGELVFL 72
           P Y  MI  A+  LNK  G+++ AIS +I+S +  LP  H  LL  HL ++ E  E++  
Sbjct: 56  PTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKREILCD 115

Query: 73  NNN 75
            NN
Sbjct: 116 CNN 118