Miyakogusa Predicted Gene

Lj2g3v2558970.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2558970.2 Non Chatacterized Hit- tr|I1MBV2|I1MBV2_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,78.41,0,seg,NULL; Rad4 beta-hairpin domain,Rad4 beta-hairpin
domain 1; Rad4 beta-hairpin domain,Rad4 beta-ha,CUFF.39091.2
         (902 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16630.2 | Symbols: ATRAD4, RAD4 | DNA repair protein Rad4 fa...   694   0.0  
AT5G16630.1 | Symbols: ATRAD4, RAD4 | DNA repair protein Rad4 fa...   694   0.0  

>AT5G16630.2 | Symbols: ATRAD4, RAD4 | DNA repair protein Rad4
           family | chr5:5455325-5459461 FORWARD LENGTH=865
          Length = 865

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/916 (47%), Positives = 562/916 (61%), Gaps = 96/916 (10%)

Query: 21  LTEISREAVGKLLRRANKVGSSKKKNKPE------VEPEINGSQVSEQILQPQTSEVGHC 74
           L + SR AV K+L +++  GS  KK + +       +  +NG    +Q L  +       
Sbjct: 12  LAQASRVAVNKVLDKSSARGSRGKKKQDDNCDSAKRDKGVNGK--GKQALDARL------ 63

Query: 75  GGNSIGNVSAEKKRNHVSLGQGFLDEKEELHDSDWEDGAV-----AMDD------RPVTV 123
               I NV  ++       G G +D+ +E++DSDWED  +      +DD      R +T+
Sbjct: 64  ----IDNVLEDR-------GCGNVDD-DEMNDSDWEDCPIPSLDSTVDDNNVDDTRELTI 111

Query: 124 ELNV-TPDSAVRKQIRRASAEDKELAELVHKAHLLCLLARGRLIDSACDDPLIXXXXXXX 182
           E +   PD+  +K   RA+AEDK  AELVHK HLLCLLARGR++DSAC+DPLI       
Sbjct: 112 EFDDDVPDAKKQKNAYRATAEDKVRAELVHKVHLLCLLARGRIVDSACNDPLIQAALLSL 171

Query: 183 XXXXXXXXXNVTELTSKALHPLIVWFHDNFHVKNCANEDKSPHFALASALESHEGSPEEI 242
                    N+ ++T K + PL+ W  +NF V    + +KS   +LA ALES +G+ EE+
Sbjct: 172 LPSYLTKVSNLEKVTVKDIAPLLRWVRENFSVSCSPSSEKSFRTSLAFALESRKGTAEEL 231

Query: 243 AALAVALFRALNLTARFVSILDVASIKPVA-----SGSSK-----GIFSTSTPMISKLKL 292
           AALAVAL RAL LT RFVSILDVAS+KP A     SG ++     GIF TST M+ K + 
Sbjct: 232 AALAVALLRALKLTTRFVSILDVASLKPGADRNESSGQNRAKMKHGIFRTSTLMVPKQQA 291

Query: 293 DFKSPKKSLSSNEREVVGESSLGRSLKSKKACTTSHMTRSKDPPVAKDLNQSV-TNSPTS 351
               PKKS                         +SH+ ++K P     L   + ++    
Sbjct: 292 ISSYPKKS-------------------------SSHV-KNKSPFEKPQLGNPLGSDQVQD 325

Query: 352 KAHDNNPESYAIDKSHKPKRKGDLEYEMQLEMALSATAVECSENKMESGVNAESSNVSCP 411
            A +++ E+    KS   +RKGD+E+E Q+ MALSATA            N +SS V+  
Sbjct: 326 NAVNSSCEAGMSIKSDGTRRKGDVEFERQIAMALSATAD-----------NQQSSQVNNT 374

Query: 412 SKRMKIIK-GEESSTSPQVISTAVGPMKVGSPLYWAEIHSSQENLTGKWVHIDAVNMIID 470
            K  +I K    SS S QVISTA G  KV SPL W E++ + EN+ GKWVH+DAVN +ID
Sbjct: 375 KKVREITKISNSSSVSDQVISTAFGSKKVDSPLCWLEVYCNGENMDGKWVHVDAVNGMID 434

Query: 471 GEDKVEAMVAACKTSLRYVVAFAGQGAKDVTRRYCMKWYKIAPQRVNSTWWDSVLAPLRD 530
            E  +EA  AACKT LRYVVAFA  GAKDVTRRYC KW+ I+ +RV+S WWD VLAPL  
Sbjct: 435 AEQNIEAAAAACKTVLRYVVAFAAGGAKDVTRRYCTKWHTISSKRVSSVWWDMVLAPLVH 494

Query: 531 LESGAT--EGVVLSRTNQI--VATEANMMDSSAPSRSSLEDIELETRALTEPLPTNQQAY 586
           LESGAT  E + L   N +  V++ A+   SS   RS+LED+EL TRALTE LPTNQQAY
Sbjct: 495 LESGATHDEDIALRNFNGLNPVSSRASSSSSSFGIRSALEDMELATRALTESLPTNQQAY 554

Query: 587 KSHLLYAIEKWLTKYQVLHPKGPILGFCSGHPVYPRTCVQTVKTKERWLREGLQVKPNEH 646
           KSH +YAIEKWL K Q+LHPKGP+LGFCSGHPVYPRTCVQT+KTKERWLR+GLQ+K NE 
Sbjct: 555 KSHEIYAIEKWLHKNQILHPKGPVLGFCSGHPVYPRTCVQTLKTKERWLRDGLQLKANEV 614

Query: 647 PVKVLKCSIKPQKVQDSEADDNGCSDSKENIKLYGKWQLEPLILPHAVNGIVPKNERGQV 706
           P K+LK + K +KV+D E  DN        ++LYGKWQ+EPL LP AVNGIVPKNERGQV
Sbjct: 615 PSKILKRNSKFKKVKDFEDGDNNIKGGSSCMELYGKWQMEPLCLPPAVNGIVPKNERGQV 674

Query: 707 EVWSEKCLPPGTVHLRLPKAFYVAKRLEIDYAPAMVGFEFRNGRSYPVFDGIVVCAEFKD 766
           +VWSEKCLPPGTVHLR P+ F VAKR  IDYAPAMVGFE+R+G + P+F+GIVVC EFKD
Sbjct: 675 DVWSEKCLPPGTVHLRFPRIFAVAKRFGIDYAPAMVGFEYRSGGATPIFEGIVVCTEFKD 734

Query: 767 ALLXXXXXXXXXXXXXXXXXXXXQALNRWYQLLSSIVTRQRLNNRYNSHLSSEMPSDVQC 826
            +L                    QA +RWYQLLSSI+TR+RL NRY ++      +DV+ 
Sbjct: 735 TILEAYAEEQEKKEEEERRRNEAQAASRWYQLLSSILTRERLKNRYANN-----SNDVEA 789

Query: 827 MNDNVSNATACGSSDENQNPRHHQVEKCDADFDASLSTPVKDHEHVFLKEYESFDKGTSL 886
            +  V++ T   + +     +    ++ +           + HEHVFL E E+FD+ TS+
Sbjct: 790 KSLEVNSETVVKAKNVKAPEKQRVAKRGEKSRVRKSRNEDESHEHVFLDEEETFDEETSV 849

Query: 887 LTKRCQCGFSVQVEEL 902
            TKRC+CGFSV+VE++
Sbjct: 850 KTKRCKCGFSVEVEQM 865


>AT5G16630.1 | Symbols: ATRAD4, RAD4 | DNA repair protein Rad4
           family | chr5:5455325-5459461 FORWARD LENGTH=865
          Length = 865

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/916 (47%), Positives = 562/916 (61%), Gaps = 96/916 (10%)

Query: 21  LTEISREAVGKLLRRANKVGSSKKKNKPE------VEPEINGSQVSEQILQPQTSEVGHC 74
           L + SR AV K+L +++  GS  KK + +       +  +NG    +Q L  +       
Sbjct: 12  LAQASRVAVNKVLDKSSARGSRGKKKQDDNCDSAKRDKGVNGK--GKQALDARL------ 63

Query: 75  GGNSIGNVSAEKKRNHVSLGQGFLDEKEELHDSDWEDGAV-----AMDD------RPVTV 123
               I NV  ++       G G +D+ +E++DSDWED  +      +DD      R +T+
Sbjct: 64  ----IDNVLEDR-------GCGNVDD-DEMNDSDWEDCPIPSLDSTVDDNNVDDTRELTI 111

Query: 124 ELNV-TPDSAVRKQIRRASAEDKELAELVHKAHLLCLLARGRLIDSACDDPLIXXXXXXX 182
           E +   PD+  +K   RA+AEDK  AELVHK HLLCLLARGR++DSAC+DPLI       
Sbjct: 112 EFDDDVPDAKKQKNAYRATAEDKVRAELVHKVHLLCLLARGRIVDSACNDPLIQAALLSL 171

Query: 183 XXXXXXXXXNVTELTSKALHPLIVWFHDNFHVKNCANEDKSPHFALASALESHEGSPEEI 242
                    N+ ++T K + PL+ W  +NF V    + +KS   +LA ALES +G+ EE+
Sbjct: 172 LPSYLTKVSNLEKVTVKDIAPLLRWVRENFSVSCSPSSEKSFRTSLAFALESRKGTAEEL 231

Query: 243 AALAVALFRALNLTARFVSILDVASIKPVA-----SGSSK-----GIFSTSTPMISKLKL 292
           AALAVAL RAL LT RFVSILDVAS+KP A     SG ++     GIF TST M+ K + 
Sbjct: 232 AALAVALLRALKLTTRFVSILDVASLKPGADRNESSGQNRAKMKHGIFRTSTLMVPKQQA 291

Query: 293 DFKSPKKSLSSNEREVVGESSLGRSLKSKKACTTSHMTRSKDPPVAKDLNQSV-TNSPTS 351
               PKKS                         +SH+ ++K P     L   + ++    
Sbjct: 292 ISSYPKKS-------------------------SSHV-KNKSPFEKPQLGNPLGSDQVQD 325

Query: 352 KAHDNNPESYAIDKSHKPKRKGDLEYEMQLEMALSATAVECSENKMESGVNAESSNVSCP 411
            A +++ E+    KS   +RKGD+E+E Q+ MALSATA            N +SS V+  
Sbjct: 326 NAVNSSCEAGMSIKSDGTRRKGDVEFERQIAMALSATAD-----------NQQSSQVNNT 374

Query: 412 SKRMKIIK-GEESSTSPQVISTAVGPMKVGSPLYWAEIHSSQENLTGKWVHIDAVNMIID 470
            K  +I K    SS S QVISTA G  KV SPL W E++ + EN+ GKWVH+DAVN +ID
Sbjct: 375 KKVREITKISNSSSVSDQVISTAFGSKKVDSPLCWLEVYCNGENMDGKWVHVDAVNGMID 434

Query: 471 GEDKVEAMVAACKTSLRYVVAFAGQGAKDVTRRYCMKWYKIAPQRVNSTWWDSVLAPLRD 530
            E  +EA  AACKT LRYVVAFA  GAKDVTRRYC KW+ I+ +RV+S WWD VLAPL  
Sbjct: 435 AEQNIEAAAAACKTVLRYVVAFAAGGAKDVTRRYCTKWHTISSKRVSSVWWDMVLAPLVH 494

Query: 531 LESGAT--EGVVLSRTNQI--VATEANMMDSSAPSRSSLEDIELETRALTEPLPTNQQAY 586
           LESGAT  E + L   N +  V++ A+   SS   RS+LED+EL TRALTE LPTNQQAY
Sbjct: 495 LESGATHDEDIALRNFNGLNPVSSRASSSSSSFGIRSALEDMELATRALTESLPTNQQAY 554

Query: 587 KSHLLYAIEKWLTKYQVLHPKGPILGFCSGHPVYPRTCVQTVKTKERWLREGLQVKPNEH 646
           KSH +YAIEKWL K Q+LHPKGP+LGFCSGHPVYPRTCVQT+KTKERWLR+GLQ+K NE 
Sbjct: 555 KSHEIYAIEKWLHKNQILHPKGPVLGFCSGHPVYPRTCVQTLKTKERWLRDGLQLKANEV 614

Query: 647 PVKVLKCSIKPQKVQDSEADDNGCSDSKENIKLYGKWQLEPLILPHAVNGIVPKNERGQV 706
           P K+LK + K +KV+D E  DN        ++LYGKWQ+EPL LP AVNGIVPKNERGQV
Sbjct: 615 PSKILKRNSKFKKVKDFEDGDNNIKGGSSCMELYGKWQMEPLCLPPAVNGIVPKNERGQV 674

Query: 707 EVWSEKCLPPGTVHLRLPKAFYVAKRLEIDYAPAMVGFEFRNGRSYPVFDGIVVCAEFKD 766
           +VWSEKCLPPGTVHLR P+ F VAKR  IDYAPAMVGFE+R+G + P+F+GIVVC EFKD
Sbjct: 675 DVWSEKCLPPGTVHLRFPRIFAVAKRFGIDYAPAMVGFEYRSGGATPIFEGIVVCTEFKD 734

Query: 767 ALLXXXXXXXXXXXXXXXXXXXXQALNRWYQLLSSIVTRQRLNNRYNSHLSSEMPSDVQC 826
            +L                    QA +RWYQLLSSI+TR+RL NRY ++      +DV+ 
Sbjct: 735 TILEAYAEEQEKKEEEERRRNEAQAASRWYQLLSSILTRERLKNRYANN-----SNDVEA 789

Query: 827 MNDNVSNATACGSSDENQNPRHHQVEKCDADFDASLSTPVKDHEHVFLKEYESFDKGTSL 886
            +  V++ T   + +     +    ++ +           + HEHVFL E E+FD+ TS+
Sbjct: 790 KSLEVNSETVVKAKNVKAPEKQRVAKRGEKSRVRKSRNEDESHEHVFLDEEETFDEETSV 849

Query: 887 LTKRCQCGFSVQVEEL 902
            TKRC+CGFSV+VE++
Sbjct: 850 KTKRCKCGFSVEVEQM 865