Miyakogusa Predicted Gene
- Lj2g3v2540620.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2540620.1 tr|G7KG16|G7KG16_MEDTR PHD finger protein
OS=Medicago truncatula GN=MTR_5g077750 PE=4 SV=1,76.6,0,no
description,Zinc finger, RING/FYVE/PHD-type; seg,NULL; MMD1 (MALE
MEIOCYTE DEATH 1), DNA BINDING,,CUFF.39062.1
(688 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfam... 687 0.0
AT2G01810.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 490 e-138
AT5G22260.1 | Symbols: MS1 | RING/FYVE/PHD zinc finger superfami... 379 e-105
AT1G33420.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 302 5e-82
AT2G07714.1 | Symbols: | transcription factor-related | chr2:34... 163 4e-40
ATMG00550.1 | Symbols: ORF160 | hypothetical protein | chrM:1512... 130 4e-30
AT1G32810.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 54 5e-07
AT5G23610.2 | Symbols: | INVOLVED IN: biological_process unknow... 53 6e-07
AT5G23610.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 53 7e-07
>AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfamily
protein | chr1:24638793-24641222 REVERSE LENGTH=704
Length = 704
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/666 (52%), Positives = 445/666 (66%), Gaps = 18/666 (2%)
Query: 1 MSFSLIEPCKKRRRVPKIFRLHSFGDAGCPIAPSGPFRDNVRLFLQEAGELEDYTVLGNP 60
M +IE C+KR+R PK++ L FG+ G PI +G FRD +R+FL++ E+EDY + G
Sbjct: 1 MPVPIIETCRKRKRKPKVYNLQRFGEDGFPIQRNGAFRDQIRVFLRDCAEIEDYDIRGMT 60
Query: 61 LWGTLLIHGKSNQMAPFYTLEENVCNSSNPFCDHCRCVGWSGHFVSKRKYHFIIPMDNGW 120
+W TLL H + + P Y +EENV +SS P+CDHCRC GWS HFVSKRKYHFIIP+D W
Sbjct: 61 VWCTLLSHETKSSLIPLYIVEENVKHSSEPYCDHCRCTGWSNHFVSKRKYHFIIPIDTEW 120
Query: 121 HKPLGEGALDNQGHLLHGVVHSNGYGHLVCLNGIEGGSKVLSGREIMDLWDRICTCLRVR 180
PL + A D+Q H+LHG++H NG+GHLVC+NG+E GSK L GREI+D WDR+C L R
Sbjct: 121 SLPLEDDAFDSQSHVLHGLIHCNGFGHLVCVNGMESGSKYLCGREIVDFWDRLCNSLGAR 180
Query: 181 KVAVEDASRKRSMDLRLLHGVAYGHCWFGRWGYRFCRGSFGVTEENYSQAIETLGSLELD 240
+ VED ++KRS++LRLL+GVAYGH WFGRWGY+FC GSFGVT+ Y AIE LGSLE+D
Sbjct: 181 MITVEDLAKKRSVELRLLYGVAYGHSWFGRWGYKFCCGSFGVTKNEYENAIEALGSLEID 240
Query: 241 EIVQDLSKTKHHKEIKQMVRSYRDMSESQIITIRDLLRFMLTIKSRAPXXXXXXXXXXXX 300
+I D + + KEI Q+ R YR+MSE + T RDLLRFML IKS A
Sbjct: 241 QIEFDFGELRQSKEINQVFRYYREMSEGHLKTFRDLLRFMLIIKSHASPQKLLPVTPPLL 300
Query: 301 XXXXFISRNSTKNPLSNRPSPMKEKSARYKKFSIAVANMDSRWPTRRLEFAAQVIVDALK 360
R S++ L +KS +Y+ +S AN+ SRWP RRL FAA+VIV++LK
Sbjct: 301 TDSPHQKR-SSRLLLKKSDVADNDKSPKYRNYSTVAANLGSRWPVRRLIFAAEVIVESLK 359
Query: 361 DSGSGR---MTRQDVRDAARLHIGDTGLLDYVLKSMNNVIVGNYVVRRMVNSSTRILEYN 417
+ + + MTRQDVRD+ARLHIGDTGLLDYVLKSMNNV+VG+ +VRR V+ TRIL Y
Sbjct: 360 EMKALKQNGMTRQDVRDSARLHIGDTGLLDYVLKSMNNVVVGDVLVRRYVDPITRILHYT 419
Query: 418 IHELGKKGFKTPKLEPPEVMALEDP--EVESSWEPGNDVYSDVVYLYKNVILGYPNSEPV 475
I +L + V+ E + + +PG DVY D++ LY NV+L YP SE V
Sbjct: 420 IQDLDDAVKAKEPKKKEAVVLEEITPLRILTPLKPGADVYGDLLLLYTNVLLNYPESELV 479
Query: 476 DLSVQTILDSRHFVKEWPLRDEMEQVLTFICCLKPNFVD-----NLKGPPCGEIVVVPLH 530
+ Q ILDS+HF+KEWP+ D + VL F+C + P+ VD + PP GE+V VPL
Sbjct: 480 RSATQAILDSKHFIKEWPIWDNNDTVLQFLCRINPSLVDVRSEQTTELPP-GELVTVPLQ 538
Query: 531 ATVGDLKQAAEIALRDTYCIADRLIVTDIAEFMGVRDEEVLFGLVESGVELCVRGISIDL 590
ATV DLKQA E RDTYCI +VT+I E E L+ S L VRG IDL
Sbjct: 539 ATVYDLKQAIEETFRDTYCILSNFVVTEIDEV------EEDMSLIGSCSALTVRGHGIDL 592
Query: 591 CTPLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCSG 650
+ LK QGG D W V+C C A+DDDGERM++CD+CEVWQHTRCCGIDDS+T+PPLFVCS
Sbjct: 593 ESKLKCQGGCDTWMVKCICRARDDDGERMISCDVCEVWQHTRCCGIDDSDTLPPLFVCSN 652
Query: 651 CCDSLV 656
CC+
Sbjct: 653 CCEEFA 658
>AT2G01810.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr2:347537-349952 FORWARD LENGTH=697
Length = 697
Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust.
Identities = 261/687 (37%), Positives = 397/687 (57%), Gaps = 41/687 (5%)
Query: 1 MSFSLIEPCKKRRRVPKIFRLHSFGDAGCPIAP-----SGPFRDNVRLFLQEAGELEDYT 55
M+ + + +R++ PK+ ++ F + +P + FRDN+R FL+E E+EDYT
Sbjct: 1 MAITAYDALTERQKAPKVLLINDFAISSSSSSPPFFNLAATFRDNIRSFLREYAEIEDYT 60
Query: 56 VLGNPLWGTLLIHGKSNQMAPFYTLEENVCNSS-NPFCDHCRCVGWSGHFVSKRKYHFII 114
+ G + L + + P Y +E+ + +SS NP CD CRC GW H+V+KRKYH II
Sbjct: 61 IDGATVSTIFLGSQANGVVFPLYIIEQQISDSSPNPLCDFCRCFGWGHHYVTKRKYHMII 120
Query: 115 PMDNGWHKPLGEGALDNQGHLLHGVVHSNGYGHLVCLNGIEGGSKVLSGREIMDLWDRIC 174
P + W++PL +L HL+HG++H NG+GHL+C+N LSG +IMD WDR+C
Sbjct: 121 PNRDEWNEPLKRESLTLSSHLMHGLIHCNGFGHLLCINTDLDDPNHLSGDQIMDFWDRLC 180
Query: 175 TCLRVRKVAVEDASRKRSMDLRLLHGVAYGHCWFGRWGYRFCRGSFGVTEENYSQAIETL 234
+ L RK++++D S+K +MDLRLLHGVAYG WFG+W Y F GSFGV ++ Y +AI TL
Sbjct: 181 STLHTRKISLDDTSKKGAMDLRLLHGVAYGRPWFGKWDYMFSHGSFGVKKDLYWRAILTL 240
Query: 235 GSLELDEIVQDLSKTKHHKEIKQMVRSYRDMSESQIITIRDLLRFMLTIKSRAPXXXXXX 294
S+E+D+I+++LS T + +K+++ YR +ES + T+ DLLRFML S+AP
Sbjct: 241 SSIEVDKILEELSGTSKGRVMKKIIDFYRGSTESPLATLSDLLRFMLGFISKAPIERKTA 300
Query: 295 XXXXXXXXXXF---ISRNSTKNPLSNRPSPMKE----------------------KSARY 329
R + + P + K +Y
Sbjct: 301 MALVAMSLDHVSYPTLRADENSEVCTSPDQESDDNGYESGRDTVLDDHNTTTSGIKPPQY 360
Query: 330 KKFSIAVANMDSRWPTRRLEFAAQVIVDALKDSGSGRMTRQDVRDAARLHIGDTGLLDYV 389
F SRWP RRL AAQ ++ K+ S ++RQD+R+A R IGDTGL+D++
Sbjct: 361 YSFDDLSRREHSRWPGRRLNDAAQAVLKVFKERNST-ISRQDLREAVRSSIGDTGLIDFL 419
Query: 390 LKSMNNVIVGNYVVRRMVNSSTRILEYNIHELGKKGFKTPKLEPPEVMALEDPEVESSWE 449
LK ++ V++G+ +V+R N +R+L++++ + + + + + +V E E S+
Sbjct: 420 LKHIDKVLIGDQIVQRSTNPKSRMLQFSLRTINSRVQEQKRKKKRKVKPQETSECTST-T 478
Query: 450 PGNDVYSDVVYLYKNVILGYPNSEPVDLSVQTILDSRHFVKEWPLRDEMEQVLTFICCLK 509
PG Y D++YLY+N++L YP+S+ + Q IL + FVKEW +++ LT C +
Sbjct: 479 PGLSPYDDILYLYQNLLLTYPDSDLYSEASQVILKCKSFVKEWSYQEQNH--LTVSCQVL 536
Query: 510 PNFVDNLKG----PPCGEIVVVPLHATVGDLKQAAEIALRDTYCIADRLIVTDI-AEFMG 564
PN + L+ P G++V VP +AT+ +LK AAE LRDTYCI + V +I ++
Sbjct: 537 PNHEELLRDFTRLLPPGDLVAVPENATIRELKSAAEKVLRDTYCITETFEVLEIRNRYLE 596
Query: 565 VRDEEVLFGLVESGVELCVRGISIDLCTPLKYQGGSDNWKVRCECGAQDDDGERMVACDI 624
D+ V + E V+G +D+ T L+Y+GG D+W V C+CGA+DDDGERMVACD
Sbjct: 597 KLDDNVSLK-SQGNTEFMVKGFGLDIGTELRYEGGFDDWTVDCKCGARDDDGERMVACDA 655
Query: 625 CEVWQHTRCCGIDDSETVPPLFVCSGC 651
C+VW HT C I+D E VP +F+C+ C
Sbjct: 656 CKVWHHTLCNSIEDDEAVPSVFLCNMC 682
>AT5G22260.1 | Symbols: MS1 | RING/FYVE/PHD zinc finger superfamily
protein | chr5:7367707-7370192 REVERSE LENGTH=672
Length = 672
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 234/694 (33%), Positives = 367/694 (52%), Gaps = 84/694 (12%)
Query: 8 PCKKRRRVPKIFRLHSFGDAGCPIAPSG-PFRDNVRLFLQEAGELEDYTVLGNPLWGTLL 66
P K++R ++FRL +FG++G P + FRDN+ L E G E ++G+ + +
Sbjct: 14 PKKRKRGESRVFRLKTFGESGHPAEMNELSFRDNLAKLL-EFGHFESSGLMGSWSFQLEI 72
Query: 67 IHGKSNQMAPFYTLEENVCNSSNPFCDHCRCVGWSGHFVSKRKYHFIIPMDN-------- 118
+ + +EE + S N C+HC+ VGW + +KYHF+IP
Sbjct: 73 QRNPNPLYVLLFVVEEPIEASLNLRCNHCQYVGWGNQMICNKKYHFVIPSKETMAAFLKL 132
Query: 119 ---GWHKPLGEG---ALDNQGHLLHGVVHSNGYGHLVCLNGIEGGSKVLSGREIMDLWDR 172
G+ P E ++ QGH+LHG HSNG+GHL+ LNGIE GS L+G ++MDLWDR
Sbjct: 133 EGGGYAFPEKESFSHLVELQGHVLHGFFHSNGFGHLLSLNGIETGSD-LTGHQVMDLWDR 191
Query: 173 ICTCLRVRKVAVEDASRKRSMDLRLLHGVAYGHCWFGRWGYRFCRGSFGVTEENYSQAIE 232
+CT L+ RK+ + DAS K+ M+LRLLHGVA G WFGRWGYRF G++GVT++ Y +A+E
Sbjct: 192 LCTGLKARKIGLNDASHKKGMELRLLHGVAKGEPWFGRWGYRFGSGTYGVTQKIYEKALE 251
Query: 233 TLGSLELDEIVQDLSKTKHHKEIKQMVRSYRDMSESQIITIRDLLRFMLTIKSRAPXXXX 292
++ ++ L + L T ++E ++ Y+ +S +IT+ DL RFML + SR P
Sbjct: 252 SVRNIPLCLLNHHL--TSLNRETPILLSKYQSLSTEPLITLSDLFRFMLHLHSRLP---- 305
Query: 293 XXXXXXXXXXXXFISRNSTKNPLSNRPSPMKEKSARYKKFSIAVANMDSRWPTRRLEFAA 352
N +SN + + I++ + + RW +R++ A
Sbjct: 306 ------------------RDNYMSNSRNQI-----------ISIDSTNCRWSQKRIQMAI 336
Query: 353 QVIVDALKDSGSGRMTRQDVRDAARLHIGDTGLLDYVLKSMNNVIVGNYVVRRMVNSSTR 412
+V++++LK ++RQ+VRDAAR +IGDTGLLD+VLKS+ N +VGNY+VRR +N +
Sbjct: 337 KVVIESLKRVEYRWISRQEVRDAARNYIGDTGLLDFVLKSLGNQVVGNYLVRRSLNPVKK 396
Query: 413 ILEYNIHELGK----KGFKTPKLEPPEVMALEDPEVESSWEPGNDVYSDVVYLYKNVILG 468
+LEY++ ++ + L+ M + G V D+ Y YK++++
Sbjct: 397 VLEYSLEDISNLLPSSNNELITLQNQNSMGKMATNGHNKITRG-QVMKDMFYFYKHILMD 455
Query: 469 YPNS--------EPVDLSVQTILDSRHFVKEWP-LRDEMEQVLTF--------ICCL--K 509
Y + ++ + ILD+++F+KE+ +RD + L C + K
Sbjct: 456 YKGVLGPIGGILNQIGMASRAILDAKYFIKEYHYIRDTSAKTLHLDRGEELGIFCTIAWK 515
Query: 510 PNFVDNLKGPPCGEIVVVPLHATVGDLKQAAEIALRDTYCIADRLIVTDI--AEFMGVRD 567
+ +N P E +VV AT+ ++ AE RD Y ++V + + R
Sbjct: 516 CHHHNNEIKVPPQECIVVKKDATLSEVYGEAERVFRDIYWELRDVVVESVVGGQIEITRV 575
Query: 568 EEVLF----GLVESGVELCVRGISIDLCTPLKYQGGSDNWKVRCECGAQDDDGERMVACD 623
+E+ GLV G + I + C + + ++ CECGA ++DGERMV CD
Sbjct: 576 DEMALNGNKGLVLEGNVGMMMNIEVTKC--YEDDDKKKDKRIECECGATEEDGERMVCCD 633
Query: 624 ICEVWQHTRCCGIDDSETVPPLFVCSGCCDSLVP 657
ICEVWQHTRC G+ +E VP +F+C C L+P
Sbjct: 634 ICEVWQHTRCVGVQHNEEVPRIFLCQSCDQHLIP 667
>AT1G33420.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:12121063-12123346 REVERSE LENGTH=697
Length = 697
Score = 302 bits (774), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 216/677 (31%), Positives = 320/677 (47%), Gaps = 130/677 (19%)
Query: 36 PFRDNVRLFLQEAGELE--DYTVLGNPL-WGTLLIHGKS-------NQMAPFYTLEENVC 85
PFRD VR FL + T+ + + W +L G S +++ +EE+V
Sbjct: 43 PFRDGVRTFLATHARVTFPPSTLFSSLMTWQIMLRPGDSTDGSDLSSKLVSLDVVEEDVT 102
Query: 86 NSSNP-FCDHCRCVGWSGHFVSKRKYHFIIPMDN--------GWHKPLGEGA-------- 128
SS +C+HC VGWS H V +++Y FII G + L EG+
Sbjct: 103 RSSRSVYCEHCCVVGWSSHPVCRKRYRFIIRSGGDTKACTRCGNTQNLSEGSNCKWCSMA 162
Query: 129 ----------LDNQGHLLHGVVHSNGYGHLVCLNGIEGGSKVLSGREIMDLWDRICTCLR 178
L++ HLLHGV+HSNGY HL+CLNG EGGS L+GR IMD WDR+C+ L
Sbjct: 163 LDIENWVYSQLEDNTHLLHGVIHSNGYAHLLCLNGREGGSGFLTGRAIMDFWDRLCSSLA 222
Query: 179 VRKVAVEDASRKRSMDLRLLHGVAYGHCWFGRWGYRFCRGSFGVTEENYSQAIETLGSLE 238
VRK +V D SRK MD RLLHG+ G W+ WGY F GS+ +T+E Y A++TL ++
Sbjct: 223 VRKASVMDVSRKYGMDYRLLHGITRGCSWYSEWGYEFKSGSYALTKEAYQSAVDTLSAIP 282
Query: 239 LDEIVQDLSKTKHHKEIKQMVRSYRDMSESQIITIRDLLRFMLTIKSRAPXXXXXXXXXX 298
L E + K ++ ++ Y+ +S S+++T++DL F+L +
Sbjct: 283 LSEFL--FQGRKPRTQLHSIISFYQSLSCSELVTVKDLFSFLLQM--------------- 325
Query: 299 XXXXXXFISRNSTKNPLSNRPSPMKEKSARYKKFSIAVANMDSRWPTRRLEFAAQVIVDA 358
I NS+K P S K S+ A W +E Q +V
Sbjct: 326 -------IRENSSK-PAS--------------KSSVLCA-----WSKSDVERVQQTMVKI 358
Query: 359 LKDSG---SGRMTRQDVRDAARLHIGDTGLLDYVLKSMNNVIV--GNYVVRRMVNSSTRI 413
LK SG + +TR ++ + L+DY LK V+V G+ VV N +
Sbjct: 359 LKASGRPQANWVTRWALKRSI-CKSASPQLIDYCLKHFGGVLVDDGSRVVSSRCNPGSND 417
Query: 414 LEY------NIHELGKKGFKTPKLEPPEVMALEDPEVESSWEPGNDVYSDVVYLYKNVIL 467
EY N+H L + +E V D+ YLY+ ++
Sbjct: 418 FEYRLESVNNVHRLSNQDVNNASVE--------------------HVKQDLRYLYETLL- 456
Query: 468 GYPNS----------EPVDLSVQTILDSRHFVKEWPLRDEMEQVLTFICCLKPNFVDNLK 517
+P + E + + ILD +HF+K++ + CC++ D LK
Sbjct: 457 -HPQTMAEFRSRATREKMIDAATKILDCKHFIKDYLSSTVNPVAINLWCCVE--LSDELK 513
Query: 518 GPPC--GEIVVVPLHATVGDLKQAAEIALRDTYCIADRLIVTDIAEFMGVRDEEVLFGLV 575
P E +V+PL+ATV DLK A A ++ Y + R V ++ + + D L LV
Sbjct: 514 ESPAPPPERLVLPLNATVSDLKIEAAKAFQEVYAMFKRFEVEELLGYGSIDDSITLKFLV 573
Query: 576 ESGVELCVRG-ISIDLCTPLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCC 634
+ + ++G S + + G DNWKV C+CG +DDDGERM+ACD C VW HTRC
Sbjct: 574 GTNGVIRIKGRCSKHGLLRYRMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCI 633
Query: 635 GIDDSETVPPLFVCSGC 651
GI++++ +P F+C C
Sbjct: 634 GINNADALPSKFLCFRC 650
>AT2G07714.1 | Symbols: | transcription factor-related |
chr2:3407671-3408506 REVERSE LENGTH=196
Length = 196
Score = 163 bits (413), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 93/123 (75%), Gaps = 1/123 (0%)
Query: 167 MDLWDRICTCLRVRKVAVEDASRKRSMDLRLLHGVAYGHCWFGRWGYRFCRGSFGVTEEN 226
MDLWDR C L RK+ +ED S+KRSMDLRLLHGVAYGH WFG+WGYRFC GSFGV E +
Sbjct: 1 MDLWDRFCVNLHTRKITLEDESQKRSMDLRLLHGVAYGHSWFGKWGYRFCSGSFGVEEHH 60
Query: 227 YSQAIETLGSLEL-DEIVQDLSKTKHHKEIKQMVRSYRDMSESQIITIRDLLRFMLTIKS 285
Y +AI L S+ L D+I + + K + I +VR YRDMSE Q+ T++DLLRFMLTIKS
Sbjct: 61 YHRAIAFLTSISLVDDITANFRENKANLNIGDIVRCYRDMSEIQLTTLQDLLRFMLTIKS 120
Query: 286 RAP 288
RAP
Sbjct: 121 RAP 123
>ATMG00550.1 | Symbols: ORF160 | hypothetical protein |
chrM:151265-151747 REVERSE LENGTH=160
Length = 160
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 193 MDLRLLHGVAYGHCWFGRWGYRFCRGSFGVTEENYSQAIETLGSLEL-DEIVQDLSKTKH 251
MDLRLLHGVAYGH WFG+WGYRFC GSFGV E +Y +AI L S+ L D+I + + K
Sbjct: 1 MDLRLLHGVAYGHSWFGKWGYRFCSGSFGVEEHHYHRAIAFLTSISLVDDITANFRENKA 60
Query: 252 HKEIKQMVRSYRDMSESQIITIRDLLRFMLTIKSRAP 288
+ I +VR YRDMSE Q+ T++DLLRFMLTIKSRAP
Sbjct: 61 NLNIGDIVRCYRDMSEIQLTTLQDLLRFMLTIKSRAP 97
>AT1G32810.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:11881810-11885843 FORWARD LENGTH=1068
Length = 1068
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 603 WKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCSGC 651
W V C CG DDDG MV CD C VW HTRC + + LF C C
Sbjct: 22 WTVDCVCGVNDDDGTEMVKCDDCGVWVHTRCSRFVEGQE---LFTCHKC 67
>AT5G23610.2 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match
is: SWITCH1 (TAIR:AT5G51330.1); Has 173 Blast hits to
168 proteins in 34 species: Archae - 3; Bacteria - 10;
Metazoa - 6; Fungi - 2; Plants - 115; Viruses - 0; Other
Eukaryotes - 37 (source: NCBI BLink). |
chr5:7957641-7959968 REVERSE LENGTH=500
Length = 500
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 339 MDSRWPTRRLEFAAQVIVDALKDSGS---GRMTRQDVRDAARLHIGDTGLLDYVLKSMNN 395
+ +RW R++FA Q + D +K+ G+ +TRQ +R AR IGDTGLLD+ LK M+
Sbjct: 121 LTTRWNNERIKFAEQTLADIMKEKGATFEKPVTRQLLRVIARSKIGDTGLLDHSLKHMDG 180
Query: 396 VIV--GNYVVRRMVNS 409
+ G+ RR N+
Sbjct: 181 KVTPGGSDRFRRCYNT 196
>AT5G23610.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SWITCH1 (TAIR:AT5G51330.1); Has 170 Blast hits to
162 proteins in 36 species: Archae - 3; Bacteria - 6;
Metazoa - 6; Fungi - 4; Plants - 117; Viruses - 0; Other
Eukaryotes - 34 (source: NCBI BLink). |
chr5:7957641-7959968 REVERSE LENGTH=499
Length = 499
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 339 MDSRWPTRRLEFAAQVIVDALKDSGS---GRMTRQDVRDAARLHIGDTGLLDYVLKSMNN 395
+ +RW R++FA Q + D +K+ G+ +TRQ +R AR IGDTGLLD+ LK M+
Sbjct: 121 LTTRWNNERIKFAEQTLADIMKEKGATFEKPVTRQLLRVIARSKIGDTGLLDHSLKHMDG 180
Query: 396 VIV--GNYVVRRMVNS 409
+ G+ RR N+
Sbjct: 181 KVTPGGSDRFRRCYNT 196