Miyakogusa Predicted Gene

Lj2g3v2538590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2538590.1 Non Chatacterized Hit- tr|Q8W5G1|Q8W5G1_ORYSJ
Putative parathymosin OS=Oryza sativa subsp. japonica
,30.26,4e-18,seg,NULL; SWIB/MDM2 domain,SWIB/MDM2 domain; no
description,NULL; SWIB,SWIB/MDM2 domain; DEK_C,DEK,
,NODE_33998_length_1421_cov_98.252640.path2.1
         (330 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22360.1 | Symbols:  | SWIB complex BAF60b domain-containing ...   190   1e-48
AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing ...   118   5e-27
AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing ...   110   1e-24
AT2G14880.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    74   2e-13
AT4G34290.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    71   1e-12
AT2G35605.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    68   9e-12
AT3G03590.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    65   9e-11
AT1G31760.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    56   4e-08
AT4G26810.2 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    48   9e-06
AT4G26810.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...    48   9e-06

>AT4G22360.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr4:11807811-11809660 FORWARD LENGTH=385
          Length = 385

 Score =  190 bits (482), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/161 (63%), Positives = 120/161 (74%), Gaps = 7/161 (4%)

Query: 136 KDSTQTKPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNK 195
           K+S     KR+GGPGGLNK+C VSPEL+V+VG+PALPRTEIV+QLWAYIRKNNLQDPSNK
Sbjct: 181 KESAPAGTKRKGGPGGLNKVCRVSPELEVVVGEPALPRTEIVRQLWAYIRKNNLQDPSNK 240

Query: 196 RKIICNDELPVVFETDCTDMFKMNKLLAKHIIALEPSKQPA-PKRQKVDVESGTKSAEPA 254
           RKIIC+D L VVFETDCTDMFKMNKLLAKHI+ L+PSK     K+ K +VE+ T++ EP 
Sbjct: 241 RKIICDDALRVVFETDCTDMFKMNKLLAKHILPLDPSKDSGQAKKAKTEVETKTETTEPI 300

Query: 255 PSVIISDT------LANFFGVTGREMLQSEGLRRLWGGIKV 289
            S  IS T      L  FFG    EM   E +RR+W  IK+
Sbjct: 301 SSTAISSTVTLSEPLGKFFGTGETEMADEEIIRRVWEYIKL 341



 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 43/58 (74%), Gaps = 2/58 (3%)

Query: 2  VVTEEEISEALQSLLRESNPRRPTFTTLNQVLHQLQTNLGHDLSHKLDFIAAQINLLL 59
          +V+++++++ +++LLR+S+P   + T+L+ ++ QL+  LG DL+ K  FI  QIN+LL
Sbjct: 1  MVSDQDLAKGVETLLRQSDPS--SLTSLSSIVQQLEAKLGLDLTEKTTFIRDQINILL 56


>AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr3:6596082-6598667 FORWARD LENGTH=462
          Length = 462

 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 93/163 (57%), Gaps = 19/163 (11%)

Query: 142 KPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICN 201
           KPKR+GG GG  K+C +SPELQ   G   L RTE+VK LW YI++NNLQDP++KR IIC+
Sbjct: 255 KPKRKGG-GGFAKVCSLSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPNDKRSIICD 313

Query: 202 DELPVVFETDCTDMFKMNKLLAKHIIALEPS-----KQPAPKRQKVDVESGTKSAEP--- 253
           +    +F  +  +MF+MNK L KHI  LE +        +PK  K  +ES   S EP   
Sbjct: 314 ESFRSLFPVESINMFQMNKQLTKHIWPLEDNAGESVSSKSPKNGKQKMESDGDSEEPNEK 373

Query: 254 ---------APSVIISDTLANFFGVTGREMLQSEGLRRLWGGI 287
                    AP + +SD L  F G     + +++ ++RLW  I
Sbjct: 374 DKKQKKEVLAP-LPLSDALVKFLGDGENSLSRADVVKRLWEYI 415



 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 63/89 (70%), Gaps = 2/89 (2%)

Query: 141 TKPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIIC 200
            K K+RGG  G+ K+  +SP+L+ +VG   L RTE+VK++WAYIR+ +LQDP ++RKI+C
Sbjct: 107 VKAKKRGG--GITKVSQLSPQLEKVVGASQLGRTEVVKKMWAYIREKDLQDPKDRRKIVC 164

Query: 201 NDELPVVFETDCTDMFKMNKLLAKHIIAL 229
           ++ L  +F     +MF+MNK L KHI  L
Sbjct: 165 DELLHSLFRVKTINMFQMNKALTKHIWPL 193



 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 45/64 (70%)

Query: 167 GQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELPVVFETDCTDMFKMNKLLAKHI 226
           G+ +L R ++VK+LW YI  N+LQDPS+KR++IC+++L  +FE D  +   ++KLL  H 
Sbjct: 398 GENSLSRADVVKRLWEYINHNDLQDPSDKRRVICDEKLKELFEVDSFEDTSVSKLLTNHF 457

Query: 227 IALE 230
           I  E
Sbjct: 458 IKAE 461


>AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr1:18329736-18331691 FORWARD LENGTH=372
          Length = 372

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 8/120 (6%)

Query: 139 TQTKPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKI 198
           ++ KPK++GG  G  K+C +SPELQ   G P L RTE+VK LW YI++NNLQDPS+KR I
Sbjct: 240 SEEKPKKKGG--GFTKVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQDPSDKRTI 297

Query: 199 ICNDELPVVFETDCTDMFKMNKLLAKHIIALEPSKQ------PAPKRQKVDVESGTKSAE 252
           IC++ L  +F  +  +MF+MNK LAKHI  L    +      P   +QK+ +E+   + E
Sbjct: 298 ICDESLRSLFPVESINMFQMNKQLAKHIWPLVQEDEAGTTNDPEKGKQKMKMETDEDNDE 357



 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 66/88 (75%), Gaps = 2/88 (2%)

Query: 142 KPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICN 201
           K K+RGG  G NK+C +SP+L+  +G   L RTE+VK++WAYIR+++LQDP+N+R I+C+
Sbjct: 94  KAKKRGG--GFNKICQLSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCD 151

Query: 202 DELPVVFETDCTDMFKMNKLLAKHIIAL 229
           + L  +F     +MF+MNK LAKHI AL
Sbjct: 152 ESLHSLFRVKTINMFQMNKALAKHIWAL 179


>AT2G14880.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr2:6393686-6394841 REVERSE LENGTH=141
          Length = 141

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 55/80 (68%), Gaps = 1/80 (1%)

Query: 149 PGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELPVVF 208
           P G+ K   VSPE+Q IV  P + RT+ +K++WAYI++++LQDP NKR+I+C+++L  +F
Sbjct: 62  PRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIF 121

Query: 209 E-TDCTDMFKMNKLLAKHII 227
           E  D     ++ KL+  H +
Sbjct: 122 EGRDRVGFLEIAKLIGPHFL 141


>AT4G34290.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr4:16410883-16412122 FORWARD LENGTH=144
          Length = 144

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 3/92 (3%)

Query: 137 DSTQTKPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKR 196
           D T T   R   P G+ K   VS  +Q +VG P +PRT+ +K++WAYI++++LQDP NKR
Sbjct: 55  DPTTTTKTRE--PRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKR 112

Query: 197 KIICNDELPVVFE-TDCTDMFKMNKLLAKHII 227
            I+C+++L  +FE  +     ++ KL+  H +
Sbjct: 113 DILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144


>AT2G35605.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr2:14946161-14947027 FORWARD LENGTH=109
          Length = 109

 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 3/90 (3%)

Query: 137 DSTQTKPKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKR 196
            ST  K  R+G   G+ K+  VS  L   +G+  + RT  VK++W YI+ NNLQ+P NKR
Sbjct: 17  SSTGAKTGRQGT--GILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKR 74

Query: 197 KIICNDELPVVFE-TDCTDMFKMNKLLAKH 225
           +I+C+++L  +F   D     +++KLL++H
Sbjct: 75  EILCDEQLKTIFSGKDTVGFLEISKLLSQH 104


>AT3G03590.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr3:865341-866669 REVERSE LENGTH=143
          Length = 143

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 151 GLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELPVVFE- 209
           G+ K+  VSP L   +G     RT+ +K +W YI+ ++LQ+P++KR+I C++ L ++FE 
Sbjct: 63  GIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEG 122

Query: 210 TDCTDMFKMNKLLAKHII 227
            D     +++KLL+ H +
Sbjct: 123 KDKVGFLEISKLLSPHFV 140


>AT1G31760.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr1:11372602-11373414 REVERSE LENGTH=112
          Length = 112

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 151 GLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELPVVFE- 209
           G+ K   VS +L    G+  L R   +K++W Y++ +NLQ+P+NK++I C+D+L  +F+ 
Sbjct: 32  GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDG 91

Query: 210 TDCTDMFKMNKLLAKH 225
            D   + ++ KLL+ H
Sbjct: 92  KDKVGITEIMKLLSPH 107


>AT4G26810.2 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr4:13492247-13492649 REVERSE LENGTH=106
          Length = 106

 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 150 GGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELPVVF 208
           G L  L  +   L+  VGQ  + R     ++W+YI+ NNLQDP NK  +IC+++L  + 
Sbjct: 18  GNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEKLKSIL 76


>AT4G26810.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr4:13492247-13492649 REVERSE LENGTH=106
          Length = 106

 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 150 GGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELPVVF 208
           G L  L  +   L+  VGQ  + R     ++W+YI+ NNLQDP NK  +IC+++L  + 
Sbjct: 18  GNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEKLKSIL 76