Miyakogusa Predicted Gene

Lj2g3v2536470.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2536470.1 Non Chatacterized Hit- tr|C0P634|C0P634_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,47.79,6e-19,ZINC_FINGER_C2H2_2,Zinc finger, C2H2;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2; ZFP4 (ZINC FINGER
PROTEI,CUFF.39054.1
         (258 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G66140.1 | Symbols: ZFP4 | zinc finger protein 4 | chr1:24620...   154   4e-38
AT1G24625.1 | Symbols: ZFP7 | zinc finger protein 7 | chr1:87260...   120   7e-28
AT1G80730.1 | Symbols: ZFP1, ATZFP1 | zinc-finger protein 1 | ch...   103   1e-22
AT5G10970.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily...    94   7e-20
AT5G25160.1 | Symbols: ZFP3 | zinc finger protein 3 | chr5:86875...    94   1e-19
AT5G57520.1 | Symbols: ZFP2, ATZFP2 | zinc finger protein 2 | ch...    77   1e-14
AT5G14010.1 | Symbols: KNU | C2H2 and C2HC zinc fingers superfam...    64   8e-11
AT3G58070.1 | Symbols: GIS | C2H2 and C2HC zinc fingers superfam...    62   4e-10
AT5G01860.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily...    61   9e-10
AT2G41940.1 | Symbols: ZFP8 | zinc finger protein 8 | chr2:17507...    58   7e-09
AT1G67030.1 | Symbols: ZFP6 | zinc finger protein 6 | chr1:25016...    58   8e-09
AT2G37740.1 | Symbols: ATZFP10, ZFP10 | zinc-finger protein 10 |...    55   4e-08
AT1G68360.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily...    55   7e-08
AT5G27880.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily...    54   1e-07
AT5G05120.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily...    54   1e-07
AT5G06650.1 | Symbols: GIS2 | C2H2 and C2HC zinc fingers superfa...    54   1e-07
AT4G17810.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily...    53   2e-07
AT5G48890.1 | Symbols:  | C2H2-like zinc finger protein | chr5:1...    52   3e-07
AT5G06070.1 | Symbols: RBE, RAB | C2H2 and C2HC zinc fingers sup...    50   1e-06
AT3G23130.1 | Symbols: SUP, FON1, FLO10 | C2H2 and C2HC zinc fin...    49   2e-06

>AT1G66140.1 | Symbols: ZFP4 | zinc finger protein 4 |
           chr1:24620063-24620845 REVERSE LENGTH=260
          Length = 260

 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/179 (49%), Positives = 115/179 (64%), Gaps = 39/179 (21%)

Query: 107 RVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGF---FSERYAS---------- 153
           RVFSCNYCQRKF+SSQALGGHQNAHKRERTLAKRAMRMG    F  R +S          
Sbjct: 83  RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAA 142

Query: 154 -LASLPLHG-------SFRSLGIKAHSSLHHGFSPPLAMRPNTP-TEVKSNAKFEQGYPG 204
            L+ LPLHG       SFR+LGI+AHSS H      ++M   TP T +++ A+F QGY G
Sbjct: 143 ALSCLPLHGSGNGNMTSFRTLGIRAHSSAHD-----VSMTRQTPETLIRNIARFNQGYFG 197

Query: 205 --LPIFLEDDDSDLLWPGSFRQ----VAVETGDNSHQNFILTGNSGLSFTEVNPPLEVE 257
             +P ++EDD++++LWPGSFRQ    VAVE G+++       G   + F +V   +++E
Sbjct: 198 NCIPFYVEDDEAEMLWPGSFRQATNAVAVEAGNDN------LGERKMDFLDVKQAMDME 250


>AT1G24625.1 | Symbols: ZFP7 | zinc finger protein 7 |
           chr1:8726009-8726638 REVERSE LENGTH=209
          Length = 209

 Score =  120 bits (302), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 81/129 (62%), Gaps = 20/129 (15%)

Query: 106 PRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASLASLPLHGSFRS 165
           PRVFSCNYC+RKF+SSQALGGHQNAHKRERT+AKRAM MG    R       P   +  S
Sbjct: 56  PRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMG----RMFGHHHRPYTYTSSS 111

Query: 166 LGIKAHSS-LHHGFSPPLAMRPNTPTEVKSNAKF-EQGYPG--LPIFLEDDD--SDLLWP 219
           LG++AHS  LHH  S P  +           ++F  QGY G  +P+F + DD  SD  WP
Sbjct: 112 LGMQAHSGLLHHTLSQPQPLV----------SRFHHQGYFGNTVPLFFDYDDGGSDFFWP 161

Query: 220 GSFRQVAVE 228
           GSFRQV  E
Sbjct: 162 GSFRQVVEE 170


>AT1G80730.1 | Symbols: ZFP1, ATZFP1 | zinc-finger protein 1 |
           chr1:30339493-30340179 REVERSE LENGTH=228
          Length = 228

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 83/139 (59%), Gaps = 26/139 (18%)

Query: 57  DDVSLGLTLNFKNNELGAG-ATAAATDSIGGFSSTCESSNEPIALAAATI-PRVFSCNYC 114
            D+ LGLTL      L  G AT++  + I  F ++  S++           PRVFSCNYC
Sbjct: 20  QDLELGLTL------LSRGTATSSELNLIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYC 73

Query: 115 QRKFFSSQALGGHQNAHKRERTLAKRAM--RMGFFS-------------ERYASLASLPL 159
           QRKF+SSQALGGHQNAHKRERTLAKR    +M   S              R+AS+ASLPL
Sbjct: 74  QRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSRFASMASLPL 133

Query: 160 HGSFR---SLGIKAHSSLH 175
           HGS     +LGI+AHS++H
Sbjct: 134 HGSVNNRSTLGIQAHSTIH 152


>AT5G10970.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily
           protein | chr5:3469268-3470086 FORWARD LENGTH=272
          Length = 272

 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/116 (48%), Positives = 66/116 (56%), Gaps = 20/116 (17%)

Query: 65  LNFKNNELGAGATAAATDSIGGFSSTCESSNEPIALAAATIPRVFSCNYCQRKFFSSQAL 124
           LN + N L    T   T S  G +ST +              ++FSCNYCQR F+SSQAL
Sbjct: 74  LNQELNLLDCLETGVVTPSFNGSTSTEQ--------------KLFSCNYCQRTFYSSQAL 119

Query: 125 GGHQNAHKRERTLAKRAMRM---GFFSERYASLASLPLHGSF--RSLGIKAHSSLH 175
           GGHQNAHKRERTLAKR  RM     F   Y   A +P HG +  R+LGI+AHS  H
Sbjct: 120 GGHQNAHKRERTLAKRGQRMASAAAFGHPYG-FAPVPFHGQYSNRTLGIQAHSMSH 174


>AT5G25160.1 | Symbols: ZFP3 | zinc finger protein 3 |
           chr5:8687524-8688231 FORWARD LENGTH=235
          Length = 235

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 55/80 (68%), Gaps = 8/80 (10%)

Query: 103 ATIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMG----FFSERYASLASLP 158
           +T  ++FSCNYCQR F+SSQALGGHQNAHKRERTLAKR  RM      F   Y   + LP
Sbjct: 55  STEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAASASAFGHPYG-FSPLP 113

Query: 159 LHGSF---RSLGIKAHSSLH 175
            HG +   RSLGI+AHS  H
Sbjct: 114 FHGQYNNHRSLGIQAHSISH 133


>AT5G57520.1 | Symbols: ZFP2, ATZFP2 | zinc finger protein 2 |
           chr5:23296019-23296471 FORWARD LENGTH=150
          Length = 150

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 47/80 (58%)

Query: 106 PRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASLASLPLHGSFRS 165
           PRVFSCNYCQRKF+SSQALGGHQNAHK ERTLAK++  +   S    S    P  G F  
Sbjct: 49  PRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELFRSSNTVDSDQPYPFSGRFEL 108

Query: 166 LGIKAHSSLHHGFSPPLAMR 185
            G      L  G S   + R
Sbjct: 109 YGRGYQGFLESGGSRDFSAR 128


>AT5G14010.1 | Symbols: KNU | C2H2 and C2HC zinc fingers superfamily
           protein | chr5:4522260-4522745 FORWARD LENGTH=161
          Length = 161

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 107 RVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAM 142
           R+F C YC RKF++SQALGGHQNAHKRER  A+R +
Sbjct: 36  RLFPCQYCPRKFYTSQALGGHQNAHKRERAAARRNL 71


>AT3G58070.1 | Symbols: GIS | C2H2 and C2HC zinc fingers superfamily
           protein | chr3:21506845-21507606 REVERSE LENGTH=253
          Length = 253

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 31/41 (75%)

Query: 107 RVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFF 147
           R F C+YC R F +SQALGGHQNAHKRER LAKR +   F+
Sbjct: 89  RRFECHYCFRNFPTSQALGGHQNAHKRERQLAKRGVSSYFY 129


>AT5G01860.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily
           protein | chr5:335630-336277 FORWARD LENGTH=215
          Length = 215

 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 32/34 (94%)

Query: 107 RVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKR 140
           RVF+C +C+++F +SQALGGHQNAHK+ER+LAKR
Sbjct: 65  RVFACTFCKKEFSTSQALGGHQNAHKQERSLAKR 98


>AT2G41940.1 | Symbols: ZFP8 | zinc finger protein 8 |
           chr2:17507556-17508329 FORWARD LENGTH=257
          Length = 257

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 27/35 (77%)

Query: 107 RVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRA 141
           R F C+YC R F +SQALGGHQNAHKRER  AKR 
Sbjct: 93  RRFECHYCFRNFPTSQALGGHQNAHKRERQHAKRG 127


>AT1G67030.1 | Symbols: ZFP6 | zinc finger protein 6 |
           chr1:25016644-25017237 FORWARD LENGTH=197
          Length = 197

 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 29/38 (76%)

Query: 107 RVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRM 144
           R + C YC R+F +SQALGGHQNAHK+ER L KRA  +
Sbjct: 39  RKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQML 76


>AT2G37740.1 | Symbols: ATZFP10, ZFP10 | zinc-finger protein 10 |
           chr2:15827706-15828620 REVERSE LENGTH=304
          Length = 304

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 10/73 (13%)

Query: 85  GGF----SSTCESSNEPIALA----AATI--PRVFSCNYCQRKFFSSQALGGHQNAHKRE 134
           GGF     S  ESS E +A A    A ++  PR ++C++C+R+F S+QALGGH N H+R+
Sbjct: 5   GGFWIPKKSNKESSWEELAFAEDDAAGSLWPPRSYTCSFCRREFKSAQALGGHMNVHRRD 64

Query: 135 RTLAKRAMRMGFF 147
           R   K+A     F
Sbjct: 65  RARLKQADDQYLF 77


>AT1G68360.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily
           protein | chr1:25621678-25622412 REVERSE LENGTH=244
          Length = 244

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 27/35 (77%)

Query: 107 RVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRA 141
           R + C YC R+F +SQALGGHQNAHK+ER   KRA
Sbjct: 71  RKYECQYCCREFGNSQALGGHQNAHKKERQQLKRA 105


>AT5G27880.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily
           protein | chr5:9885908-9886744 FORWARD LENGTH=278
          Length = 278

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 88  SSTCESSNEPIALAAATIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRM 144
           SS      E +    +   ++++C++C++ F +SQALGGHQNAHK+ER   K+   M
Sbjct: 59  SSAVRRGREIMKFYPSKSNKIYTCHFCKKGFSTSQALGGHQNAHKQEREWDKKRKEM 115


>AT5G05120.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily
           protein | chr5:1511232-1511837 FORWARD LENGTH=201
          Length = 201

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 108 VFSCNYCQRKFFSSQALGGHQNAHKRERTLAKR 140
           ++ C YC RKF  +QALGGHQNAH++ER + K+
Sbjct: 26  IYKCKYCPRKFDKTQALGGHQNAHRKEREVEKQ 58


>AT5G06650.1 | Symbols: GIS2 | C2H2 and C2HC zinc fingers
           superfamily protein | chr5:2043486-2044061 FORWARD
           LENGTH=191
          Length = 191

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 75  GATAAATDSIGGFSSTCESSNEPIALAAATIPRVFSCNYCQRKFFSSQALGGHQNAHKRE 134
           GA+   ++S   ++   ES      +      + F C+YC R F +SQALGGHQNAHKRE
Sbjct: 27  GASHEESESKDNYNENNES------IKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHKRE 80

Query: 135 RTLAKR 140
           R   KR
Sbjct: 81  RQQTKR 86


>AT4G17810.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily
           protein | chr4:9906918-9907532 FORWARD LENGTH=204
          Length = 204

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 28/34 (82%)

Query: 106 PRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAK 139
           PR ++CN+C+R+F S+QALGGH N H+R+R  ++
Sbjct: 43  PRSYTCNFCRREFRSAQALGGHMNVHRRDRASSR 76


>AT5G48890.1 | Symbols:  | C2H2-like zinc finger protein |
           chr5:19820353-19820874 FORWARD LENGTH=173
          Length = 173

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 37/53 (69%)

Query: 107 RVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASLASLPL 159
           R+F C +C RKF SSQALGGHQNAHK+ERT A+RA R   F      L +LP+
Sbjct: 33  RIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKRAYDFVNNNDFLHTLPV 85


>AT5G06070.1 | Symbols: RBE, RAB | C2H2 and C2HC zinc fingers
           superfamily protein | chr5:1828426-1829106 REVERSE
           LENGTH=226
          Length = 226

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 27/35 (77%)

Query: 106 PRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKR 140
           PR +SC++C R+F S+QALGGH N H+R+R   K+
Sbjct: 52  PRSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQ 86


>AT3G23130.1 | Symbols: SUP, FON1, FLO10 | C2H2 and C2HC zinc
           fingers superfamily protein | chr3:8242504-8243118
           FORWARD LENGTH=204
          Length = 204

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 64  TLNFKNNELGAGATAAATDSIGGFSSTCESSNEPIALAAATIPRVFSCNYCQRKFFSSQA 123
           ++  +N+  G   T+    S G + + C+  ++ + L  +  PR ++C++C+R+F S+QA
Sbjct: 6   SIELRNSFYGRARTSPW--SYGDYDN-CQQDHDYL-LGFSWPPRSYTCSFCKREFRSAQA 61

Query: 124 LGGHQNAHKRER 135
           LGGH N H+R+R
Sbjct: 62  LGGHMNVHRRDR 73