Miyakogusa Predicted Gene

Lj2g3v2535450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2535450.1 Non Chatacterized Hit- tr|C5XC41|C5XC41_SORBI
Putative uncharacterized protein Sb02g024100
OS=Sorghu,47.66,5e-19,seg,NULL,CUFF.39053.1
         (207 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16550.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   102   1e-22

>AT5G16550.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:5405526-5406641 FORWARD LENGTH=249
          Length = 249

 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 100/199 (50%), Gaps = 13/199 (6%)

Query: 5   PNG--EPVKLHYEKTEK-ESLYDVVYRLV-------SEPAYTATQLHRIKTSLS---PLL 51
            NG  +P  +  E  E  +SLY ++   +       S+    ++ L R++ S++   P L
Sbjct: 31  KNGYRKPDSVEKEDDEDLKSLYSLICLTIGSILFPDSKTGDASSFLERVRNSVAENGPKL 90

Query: 52  PEASRNSFRRLLLWSRQGSPLRQLLLISIGAVSXXXXXXXXXXXXXXXXXXXXXXIVSLL 111
            EAS  + R +LLW+R+GS LR LL+I++G +                       I+SLL
Sbjct: 91  REASERTGREILLWTRRGSSLRALLVITMGTIVLLTTMALVVFTLFFVAATANAIIISLL 150

Query: 112 ISXXXXXXXXXXXXXXXXXIYIGALSVAIFAVSTVVFWSIVAVMITAGWIGFLYTVWFVT 171
           IS                 +YIGALSVA F +ST    ++V+V+I +GWIGF Y VW  T
Sbjct: 151 ISLAVAGGFLALFFLCLTGVYIGALSVAAFVISTATVSAVVSVLIASGWIGFFYAVWLGT 210

Query: 172 RKSMGFAINSLCVTGSAIS 190
           R S+  A  S+ V GSAIS
Sbjct: 211 RGSLRLAKQSVSVVGSAIS 229