Miyakogusa Predicted Gene

Lj2g3v2471460.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2471460.2 Non Chatacterized Hit- tr|C4J6A7|C4J6A7_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,44.74,3e-18,NIBRIN-RELATED,NULL; FHA_DOMAIN,Forkhead-associated
(FHA) domain; SMAD/FHA domain,SMAD/FHA domain; n,CUFF.38990.2
         (554 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02680.1 | Symbols: NBS1, ATNBS1 | nijmegen breakage syndrome...   318   5e-87

>AT3G02680.1 | Symbols: NBS1, ATNBS1 | nijmegen breakage syndrome 1
           | chr3:576378-579226 FORWARD LENGTH=542
          Length = 542

 Score =  318 bits (816), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 156/335 (46%), Positives = 216/335 (64%), Gaps = 13/335 (3%)

Query: 1   MVWGLFPIDPLSGEDKYYIFKTGVYKVGRKGCDVIVTKDKGVSRVHAEIVVNAMNMSNL- 59
           MVWGLFP+DPLSGEDKYYIF  G+YKVGRKGCD+I+ KDKGVSR+HAE+  +A  +S   
Sbjct: 1   MVWGLFPVDPLSGEDKYYIFSKGIYKVGRKGCDIIINKDKGVSRIHAELTFDATTVSTSR 60

Query: 60  ---------SACVQIRDCSKYGTFITKSDGLKKKVHELPNKETELQDGDLVSFGTGSATY 110
                    S  ++++DCSKYGTF+    G K KVHEL NKE  LQDGD+++FGTGSA Y
Sbjct: 61  RNKSSSDTSSFVIRVKDCSKYGTFVKTDLGTKDKVHELSNKEKILQDGDVIAFGTGSAIY 120

Query: 111 KFCHVPLNIFICSSN---KVDRSLKEKISSIGASITHTLGEDCTYVLVDQLMPXXXXXXX 167
           +   +PL  ++C S+   KVD+ +++ +SSIGA I+ TL E+CT+VL++  M        
Sbjct: 121 RLSLIPLVFYLCPSSETFKVDQPVQDAVSSIGARISPTLSEECTHVLLEPRMQVNEALIN 180

Query: 168 XXXXXXSCVLKTWLEVFAEKNISTEIPSCHTYFPTVSVEGASINVADPKSRENCLKGYTF 227
                 + +L  W+ + AEK+I +EIP    Y P+V VE A ++V +   RE CL+G+TF
Sbjct: 181 AILAKKTIILTNWVMLLAEKSICSEIPGYSQYRPSVMVEEALVDVLELNVREKCLEGFTF 240

Query: 228 VLGSVHLYKFGDQLKSLLQVAGAKVISLEDFCSNTQGSDYGDDNWVVCVIPGGPACKSDV 287
           VL     Y+FG    SLL+V GA+ +++ED  S +Q S +G+ N ++CVIP     K   
Sbjct: 241 VLEPTDTYRFGCSFPSLLEVCGAETVTIEDISSMSQDSQFGEINRMICVIPKSAGDKFGR 300

Query: 288 FNKLSSLLRVDETDIICAAFSGQLDLSVLKSPCIL 322
           F  LS L RV+E D++CA FSG L  + L  P ++
Sbjct: 301 FKHLSLLSRVNEMDLVCAVFSGNLPSTSLIPPSVV 335