Miyakogusa Predicted Gene

Lj2g3v2449260.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2449260.3 Non Chatacterized Hit- tr|A9PF63|A9PF63_POPTR
Putative uncharacterized protein OS=Populus
trichocarp,47.3,1e-16,seg,NULL; B3 DNA binding domain,B3 DNA binding
domain; DNA-binding pseudobarrel domain,DNA-binding p,CUFF.38981.3
         (322 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58280.1 | Symbols:  | AP2/B3-like transcriptional factor fam...   144   8e-35
AT5G42700.1 | Symbols:  | AP2/B3-like transcriptional factor fam...   121   6e-28
AT3G19184.1 | Symbols:  | AP2/B3-like transcriptional factor fam...   119   2e-27

>AT5G58280.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr5:23567338-23568670 FORWARD LENGTH=273
          Length = 273

 Score =  144 bits (363), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 83/96 (86%)

Query: 2   NLQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMILEDEDGSEYEAVYIGKR 61
           +L++ +P FVKSMVRSHVYSCFWLGLPSRFC ++ P+   ++ LEDE+G  YEAVYIG+R
Sbjct: 119 SLKSPHPYFVKSMVRSHVYSCFWLGLPSRFCADNFPEETMEIELEDEEGEVYEAVYIGRR 178

Query: 62  SGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYI 97
           +GLSGGW+ FALDHKLDDGDAL+FELVE  +FKIY+
Sbjct: 179 AGLSGGWKRFALDHKLDDGDALLFELVEPKKFKIYV 214


>AT5G42700.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr5:17122171-17124177 FORWARD LENGTH=211
          Length = 211

 Score =  121 bits (304), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 55/100 (55%), Positives = 71/100 (71%), Gaps = 4/100 (4%)

Query: 3   LQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYD--MILEDEDGSEYEAVYIGK 60
           L + YPSFVKSM++SHV   FWLGLP +FC+ HL   L+D  + L DE+G EYE +Y+ +
Sbjct: 103 LGSGYPSFVKSMLQSHVSGGFWLGLPVQFCKSHLG--LHDGVITLIDEEGEEYETIYLAR 160

Query: 61  RSGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYICRA 100
           ++GLSGGW  FA+ H L  GD LVFELV  + FK+YI R 
Sbjct: 161 KNGLSGGWMGFAVAHNLAYGDTLVFELVRRTAFKVYITRV 200


>AT3G19184.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr3:6637555-6639035 FORWARD LENGTH=277
          Length = 277

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 68/98 (69%)

Query: 3   LQTSYPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTLYDMILEDEDGSEYEAVYIGKRS 62
           L + Y SF K M++SHV   FWLGLP  FC+ H+PK    M L DE+  E +A Y+ +++
Sbjct: 123 LDSEYASFTKPMLQSHVTGGFWLGLPLPFCKAHMPKRDVIMTLVDEEEEESQAKYLAQKN 182

Query: 63  GLSGGWRAFALDHKLDDGDALVFELVEASRFKIYICRA 100
           GLSGGWR FA+DH+L DGDA+VF L+  + FK+YI R 
Sbjct: 183 GLSGGWRGFAIDHQLVDGDAVVFHLIARTTFKVYIIRV 220