Miyakogusa Predicted Gene

Lj2g3v2448200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2448200.1 Non Chatacterized Hit- tr|I1MZN4|I1MZN4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20583 PE,82.89,0,60S
RIBOSOMAL PROTEIN L10,NULL; Ribosomal protein L16p/L10e,Ribosomal
protein L10e/L16; RIBOSOMAL_L1,CUFF.38976.1
         (259 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26910.1 | Symbols: RPL10B | Ribosomal protein L16p/L10e fami...   396   e-111
AT1G14320.1 | Symbols: SAC52, RPL10, RPL10A | Ribosomal protein ...   392   e-109
AT1G66580.1 | Symbols: SAG24, RPL10C | senescence associated gen...   391   e-109
AT1G14320.2 | Symbols: SAC52, RPL10A | Ribosomal protein L16p/L1...   190   7e-49

>AT1G26910.1 | Symbols: RPL10B | Ribosomal protein L16p/L10e family
           protein | chr1:9321709-9322813 FORWARD LENGTH=221
          Length = 221

 Score =  396 bits (1017), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/220 (85%), Positives = 200/220 (90%)

Query: 40  LGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 99
           +GRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 100 SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 159
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 160 KPQGTCARVSIGQVLLSVRCKDGNAVHAQEALRRAKFKFPGRQKIIVSRKWGFTKLSRSD 219
           K  GTCARV+IGQVLLSVRCKD +  HAQEALRRAKFKFPGRQKIIVSRKWGFTK +R+D
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180

Query: 220 YLRLKSENRIVADGVNCKVLGCHGPLANRAPGRAFLQAAA 259
           Y +L+ E RIV DGVN K L CHGPLANR PG AFL A A
Sbjct: 181 YTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSAGA 220


>AT1G14320.1 | Symbols: SAC52, RPL10, RPL10A | Ribosomal protein
           L16p/L10e family protein | chr1:4888270-4889408 FORWARD
           LENGTH=220
          Length = 220

 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/218 (85%), Positives = 199/218 (91%)

Query: 40  LGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 99
           +GRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 100 SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 159
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 160 KPQGTCARVSIGQVLLSVRCKDGNAVHAQEALRRAKFKFPGRQKIIVSRKWGFTKLSRSD 219
           K  GTCARV+IGQVLLSVRCKD +  HAQEALRRAKFKFPGRQKIIVSRKWGFTK +R+D
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180

Query: 220 YLRLKSENRIVADGVNCKVLGCHGPLANRAPGRAFLQA 257
           + +L+ E R+V DGVN K L CHGPLANR PG AFL A
Sbjct: 181 FTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLPA 218


>AT1G66580.1 | Symbols: SAG24, RPL10C | senescence associated gene
           24 | chr1:24839208-24840439 FORWARD LENGTH=221
          Length = 221

 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/220 (84%), Positives = 200/220 (90%)

Query: 40  LGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 99
           +GRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 100 SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 159
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 160 KPQGTCARVSIGQVLLSVRCKDGNAVHAQEALRRAKFKFPGRQKIIVSRKWGFTKLSRSD 219
           K  GTCARV+IGQVLLSVRCKD + VHAQEALRRAKFKFPGRQKIIVSRKWGFTK +R++
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAE 180

Query: 220 YLRLKSENRIVADGVNCKVLGCHGPLANRAPGRAFLQAAA 259
           Y +L++  RIV DGVN K L  HGPLANR PG AF+ A +
Sbjct: 181 YTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFISATS 220


>AT1G14320.2 | Symbols: SAC52, RPL10A | Ribosomal protein L16p/L10e
           family protein | chr1:4888270-4889408 FORWARD LENGTH=163
          Length = 163

 Score =  190 bits (483), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 110/220 (50%), Positives = 128/220 (58%), Gaps = 61/220 (27%)

Query: 40  LGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 99
           +GRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+K                   
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRK------------------- 41

Query: 100 SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 159
                               G D F       PF V  ++       ++ L+        
Sbjct: 42  --------------------GVDEF-------PFCVHLVSWEKENVSSEALEA------- 67

Query: 160 KPQGTCARVSIGQ--VLLSVRCKDGNAVHAQEALRRAKFKFPGRQKIIVSRKWGFTKLSR 217
                 AR++  +  VLLSVRCKD +  HAQEALRRAKFKFPGRQKIIVSRKWGFTK +R
Sbjct: 68  ------ARIACNKYMVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNR 121

Query: 218 SDYLRLKSENRIVADGVNCKVLGCHGPLANRAPGRAFLQA 257
           +D+ +L+ E R+V DGVN K L CHGPLANR PG AFL A
Sbjct: 122 ADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLPA 161