Miyakogusa Predicted Gene
- Lj2g3v2448180.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2448180.1 Non Chatacterized Hit- tr|I3T4M5|I3T4M5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.59,0,Eukaryotic type KH-domain (KH-domain type I),NULL;
RNA-BINDING PROTEIN RELATED,NULL; K homology RNA-,CUFF.38980.1
(284 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38610.2 | Symbols: | RNA-binding KH domain-containing prote... 363 e-101
AT2G38610.1 | Symbols: | RNA-binding KH domain-containing prote... 363 e-101
AT3G08620.1 | Symbols: | RNA-binding KH domain-containing prote... 355 2e-98
AT4G26480.1 | Symbols: | RNA-binding KH domain-containing prote... 257 6e-69
AT5G56140.1 | Symbols: | RNA-binding KH domain-containing prote... 253 1e-67
AT1G09660.1 | Symbols: | RNA-binding KH domain-containing prote... 245 3e-65
AT1G09660.2 | Symbols: | RNA-binding KH domain-containing prote... 199 1e-51
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 97 1e-20
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 97 1e-20
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 97 1e-20
>AT2G38610.2 | Symbols: | RNA-binding KH domain-containing protein
| chr2:16147552-16149638 REVERSE LENGTH=286
Length = 286
Score = 363 bits (931), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/291 (68%), Positives = 224/291 (76%), Gaps = 16/291 (5%)
Query: 1 MSNMYNQISSPSSQRANSPNINMRSNFDVDS-QYLAEPLAEHQKLRPFMQLLPSCSRLLN 59
MS +YN S S RA SP I RS ++DS QYL E LAEHQKL PFMQ+LP CSRLLN
Sbjct: 1 MSGLYNNSSYFSPARAASPQI--RSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLN 58
Query: 60 QEILRASGKNGMLQNQGFSDFDRLQVLSPGHMTSSELTPNFS-----GWNSLSHEQRLAG 114
QE+ R SG M+ NQGF DFDRL+ SP M SS L N S GWN LS E RL+G
Sbjct: 59 QEMFRVSG---MMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSG 114
Query: 115 AQGLNMDWQAPPAVPSSHIVKKILRLDIPMESYSNLNFVGRLLGPRGNSLKRVEATTGCR 174
G+ MDWQ P PSS+ VK+ILRL+IP+++Y N NFVGRLLGPRGNSLKRVEATTGCR
Sbjct: 115 TPGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCR 174
Query: 175 VYIRGKGSIKDLDKEDLLRGRPGYEHLSEPLHILIEAELPANIVDVRLRQAQEIIEEILK 234
V+IRGKGSIKD +KED LRGRPGYEHL+E LHILIEA+LPA+IV++RLRQAQEIIEE+LK
Sbjct: 175 VFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLK 234
Query: 235 PVDESQDFYKRQQLRERAMLNS-NFREESPQLS--GSVSPFTSNEIKRAKT 282
PVDESQDF KRQQLRE A+LNS N REESP S GSVSPF S+ KR KT
Sbjct: 235 PVDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKT 284
>AT2G38610.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:16147552-16149638 REVERSE LENGTH=286
Length = 286
Score = 363 bits (931), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/291 (68%), Positives = 224/291 (76%), Gaps = 16/291 (5%)
Query: 1 MSNMYNQISSPSSQRANSPNINMRSNFDVDS-QYLAEPLAEHQKLRPFMQLLPSCSRLLN 59
MS +YN S S RA SP I RS ++DS QYL E LAEHQKL PFMQ+LP CSRLLN
Sbjct: 1 MSGLYNNSSYFSPARAASPQI--RSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLN 58
Query: 60 QEILRASGKNGMLQNQGFSDFDRLQVLSPGHMTSSELTPNFS-----GWNSLSHEQRLAG 114
QE+ R SG M+ NQGF DFDRL+ SP M SS L N S GWN LS E RL+G
Sbjct: 59 QEMFRVSG---MMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSG 114
Query: 115 AQGLNMDWQAPPAVPSSHIVKKILRLDIPMESYSNLNFVGRLLGPRGNSLKRVEATTGCR 174
G+ MDWQ P PSS+ VK+ILRL+IP+++Y N NFVGRLLGPRGNSLKRVEATTGCR
Sbjct: 115 TPGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCR 174
Query: 175 VYIRGKGSIKDLDKEDLLRGRPGYEHLSEPLHILIEAELPANIVDVRLRQAQEIIEEILK 234
V+IRGKGSIKD +KED LRGRPGYEHL+E LHILIEA+LPA+IV++RLRQAQEIIEE+LK
Sbjct: 175 VFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLK 234
Query: 235 PVDESQDFYKRQQLRERAMLNS-NFREESPQLS--GSVSPFTSNEIKRAKT 282
PVDESQDF KRQQLRE A+LNS N REESP S GSVSPF S+ KR KT
Sbjct: 235 PVDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKT 284
>AT3G08620.1 | Symbols: | RNA-binding KH domain-containing protein
| chr3:2617925-2620314 FORWARD LENGTH=283
Length = 283
Score = 355 bits (910), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 185/286 (64%), Positives = 221/286 (77%), Gaps = 9/286 (3%)
Query: 1 MSNMYNQISSPSSQRANSPNINMRSNFDVDSQYLAEPLAEHQKLRPFMQLLPSCSRLLNQ 60
MS +YN ++ S RA SP I S+ DVDSQY+++ LAEHQKL PFMQ+LP CSRLLNQ
Sbjct: 1 MSGLYN-YNNFSPSRAASPQIRTPSS-DVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQ 58
Query: 61 EILRASGKNGMLQNQGFSDFDRLQVLSPGHMTSSELTPNFSGWNSLSHE----QRLAGAQ 116
EI R +G M+ NQGF+DFDRL+ SP M S L N SG +R+ G
Sbjct: 59 EIFRITG---MMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPERIGGPH 115
Query: 117 GLNMDWQAPPAVPSSHIVKKILRLDIPMESYSNLNFVGRLLGPRGNSLKRVEATTGCRVY 176
G+ M+WQ PA PSS+ VK+ILRLD+P+++Y N NFVGRLLGPRGNSLKRVEATTGCRVY
Sbjct: 116 GMAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVY 175
Query: 177 IRGKGSIKDLDKEDLLRGRPGYEHLSEPLHILIEAELPANIVDVRLRQAQEIIEEILKPV 236
IRGKGSIKD +KE+ L+G+PGYEHL+E LHILIEA+LP +IVD++LRQAQEIIEE++KPV
Sbjct: 176 IRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPV 235
Query: 237 DESQDFYKRQQLRERAMLNSNFREESPQLSGSVSPFTSNEIKRAKT 282
DESQD+ KRQQLRE A+LNSN RE SP SGSVSPF SN +KR KT
Sbjct: 236 DESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKT 281
>AT4G26480.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:13372885-13375793 REVERSE LENGTH=308
Length = 308
Score = 257 bits (656), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 136/254 (53%), Positives = 179/254 (70%), Gaps = 10/254 (3%)
Query: 32 QYLAEPLAEHQKLRPFMQLLPSCSRLLNQEILRASG--KNGMLQNQGFSDFDRLQVLSPG 89
+YL+E LAE KL PF+ +LP RL+NQEILR + +N + Q S FD L+ G
Sbjct: 60 KYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLLENALSQ----SRFDHPSPLASG 115
Query: 90 HMTSSELTPNFSGWNS-LSHEQRLAGAQGLNMDWQAPPAVPSSHIVKKILRLDIPMESYS 148
+ + + +GW S E+ ++ + N W P S IVK+ +R+DIP++ Y
Sbjct: 116 GIFQNSRA-DMNGWASQFPSERSVSSSPAPN--WLNSPGSSSGLIVKRTIRVDIPVDKYP 172
Query: 149 NLNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDLDKEDLLRGRPGYEHLSEPLHIL 208
N NFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKD KED++RG+PGYEHL+EPLHIL
Sbjct: 173 NYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHLNEPLHIL 232
Query: 209 IEAELPANIVDVRLRQAQEIIEEILKPVDESQDFYKRQQLRERAMLNSNFREESPQLSGS 268
+EAELP IVD RL QA+EI++++L PV+E+ DFYK+QQLRE A+LN + REE +SGS
Sbjct: 233 VEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLRELALLNGSLREEGSPMSGS 292
Query: 269 VSPFTSNEIKRAKT 282
+SP+ S +KRAKT
Sbjct: 293 ISPYNSLGMKRAKT 306
>AT5G56140.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:22725462-22727932 FORWARD LENGTH=315
Length = 315
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 136/261 (52%), Positives = 179/261 (68%), Gaps = 8/261 (3%)
Query: 25 SNFDVDSQYLAEPLAEHQKLRPFMQLLPSCSRLLNQEILRASG--KNGMLQNQGFSDFDR 82
S F +YL+E LAE KL PF+ +LP RLLNQEILR + +N + +Q S D
Sbjct: 57 SVFVEQEKYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLENATVLSQ--SGLDH 114
Query: 83 LQVLSPGHMTSSELTPNFSGWNS-LSHEQRLAGAQGLNMDWQAPPAVPSSHIVKKILRLD 141
L+ G + + + +GW S E+ + + G N W P S I K+ +R+D
Sbjct: 115 PSPLASGGIFQNARA-DMNGWASQFPSERSVPSSPGPN--WLNSPGSSSGLIAKRTIRVD 171
Query: 142 IPMESYSNLNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDLDKEDLLRGRPGYEHL 201
IP+++Y N NFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKD KE+++RG+PGYEHL
Sbjct: 172 IPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHL 231
Query: 202 SEPLHILIEAELPANIVDVRLRQAQEIIEEILKPVDESQDFYKRQQLRERAMLNSNFREE 261
+EPLHIL+EAELP IVD RL QA+EI++++L P++E+ D YK+QQLRE A+LN REE
Sbjct: 232 NEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREE 291
Query: 262 SPQLSGSVSPFTSNEIKRAKT 282
+SGSVSP+ S +KRAKT
Sbjct: 292 GSPMSGSVSPYNSLGMKRAKT 312
>AT1G09660.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:3128032-3130791 REVERSE LENGTH=298
Length = 298
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 135/268 (50%), Positives = 176/268 (65%), Gaps = 30/268 (11%)
Query: 32 QYLAEPLAEHQKLRPFMQLLPSCSRLLNQEILRASGKNGMLQNQGFSDFDRLQVLSP--- 88
+YL E L E QKL PF+Q++P+C RLLN EI R S F D DR + SP
Sbjct: 44 RYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVSS---------FPDLDRYEHGSPFRS 94
Query: 89 -GHMTSSELTPNFSGWNSL-----SHEQRLAGAQGLN-MDWQAPPAVPSSHIVKKILRLD 141
G T+ +L + GW+ + H QR + +G + + W P +P+ IVKK++RLD
Sbjct: 95 LGQPTNGKL--DLEGWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLD 152
Query: 142 IPMESYSNLNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDLDKEDLLRGRPGYEHL 201
+P++ Y + NFVGR+LGPRGNSLKRVE T CRV+IRG+GS+KD KE+ L+G+PGYEHL
Sbjct: 153 VPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHL 212
Query: 202 SEPLHILIEAELPANIVDVRLRQAQEIIEEILKPVDESQDFYKRQQLRERAMLNSNFREE 261
EPLH+LIEAELP +I++ RL A +E +LKP+DES D YKR+QL+E A LN REE
Sbjct: 213 CEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGTLREE 272
Query: 262 SPQ------LSGSVSPFTSNEIKRAKTD 283
SP LS S+SPF S KRAKT+
Sbjct: 273 SPSPSLSPCLSPSMSPFNS---KRAKTE 297
>AT1G09660.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:3128205-3130791 REVERSE LENGTH=264
Length = 264
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 143/218 (65%), Gaps = 21/218 (9%)
Query: 32 QYLAEPLAEHQKLRPFMQLLPSCSRLLNQEILRASGKNGMLQNQGFSDFDRLQVLSP--- 88
+YL E L E QKL PF+Q++P+C RLLN EI R S F D DR + SP
Sbjct: 44 RYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVSS---------FPDLDRYEHGSPFRS 94
Query: 89 -GHMTSSELTPNFSGWNSL-----SHEQRLAGAQGLN-MDWQAPPAVPSSHIVKKILRLD 141
G T+ +L + GW+ + H QR + +G + + W P +P+ IVKK++RLD
Sbjct: 95 LGQPTNGKL--DLEGWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLD 152
Query: 142 IPMESYSNLNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDLDKEDLLRGRPGYEHL 201
+P++ Y + NFVGR+LGPRGNSLKRVE T CRV+IRG+GS+KD KE+ L+G+PGYEHL
Sbjct: 153 VPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHL 212
Query: 202 SEPLHILIEAELPANIVDVRLRQAQEIIEEILKPVDES 239
EPLH+LIEAELP +I++ RL A +E +LKP+ S
Sbjct: 213 CEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMVHS 250
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 14/127 (11%)
Query: 139 RLDIPMESYSNLNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKD---LDKEDLLRGR 195
+L IPM+ + NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ K+DL
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLK--- 300
Query: 196 PGYE-HLSEPLHILIEAELPANIVDVRLRQAQEIIEEILKPVDESQDFYKRQQLRERAML 254
Y+ +E LH+L+EAE L A ++E++L+PVDE + +KRQQLRE A L
Sbjct: 301 --YDPSENEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATL 353
Query: 255 NSNFREE 261
N R+E
Sbjct: 354 NGTIRDE 360
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 14/127 (11%)
Query: 139 RLDIPMESYSNLNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKD---LDKEDLLRGR 195
+L IPM+ + NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ K+DL
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLK--- 300
Query: 196 PGYE-HLSEPLHILIEAELPANIVDVRLRQAQEIIEEILKPVDESQDFYKRQQLRERAML 254
Y+ +E LH+L+EAE L A ++E++L+PVDE + +KRQQLRE A L
Sbjct: 301 --YDPSENEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATL 353
Query: 255 NSNFREE 261
N R+E
Sbjct: 354 NGTIRDE 360
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 14/127 (11%)
Query: 139 RLDIPMESYSNLNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKD---LDKEDLLRGR 195
+L IPM+ + NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ K+DL
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLK--- 300
Query: 196 PGYE-HLSEPLHILIEAELPANIVDVRLRQAQEIIEEILKPVDESQDFYKRQQLRERAML 254
Y+ +E LH+L+EAE L A ++E++L+PVDE + +KRQQLRE A L
Sbjct: 301 --YDPSENEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATL 353
Query: 255 NSNFREE 261
N R+E
Sbjct: 354 NGTIRDE 360