Miyakogusa Predicted Gene

Lj2g3v2413520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2413520.1 Non Chatacterized Hit- tr|I3T4L6|I3T4L6_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=4
SV,60.47,1e-18,seg,NULL,CUFF.38941.1
         (98 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58375.1 | Symbols:  | Methyltransferase-related protein | ch...    76   4e-15
AT5G18150.1 | Symbols:  | Methyltransferase-related protein | ch...    67   2e-12

>AT5G58375.1 | Symbols:  | Methyltransferase-related protein |
          chr5:23596369-23596705 FORWARD LENGTH=85
          Length = 85

 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 1  MCPLRFILIFLSATLAGFFVLRNLRS-QPHPTDLDQXXXXXXXXXXXXXXXXXXXXXXXX 59
          MCPLR ILIFLSATLAGFFVL+ L S    P D                           
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLD--------DSFTDAEHADDDSVSGFSK 52

Query: 60 VRVALESGFWTLVDMASGRYLWRQLVPSSSKRST 93
          V +A++SGFWT VDMASGRYLW  L  S++KRS+
Sbjct: 53 VGMAMKSGFWTCVDMASGRYLWNNLC-SNAKRSS 85


>AT5G18150.1 | Symbols:  | Methyltransferase-related protein |
          chr5:6000014-6000331 REVERSE LENGTH=76
          Length = 76

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 22/87 (25%)

Query: 1  MCPLRFILIFLSATLAGFFVLRNLRSQPH---PTDLDQXXXXXXXXXXXXXXXXXXXXXX 57
          MCP+RF+L+F SA LAG+F  + + S P    P +L++                      
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSPEFDSPDELNEKQELN----------------- 43

Query: 58 XXVRVALESGFWTLVDMASGRYLWRQL 84
            ++  +E+GFW  VDMASGRYLWR L
Sbjct: 44 --LKKKMENGFWVFVDMASGRYLWRNL 68