Miyakogusa Predicted Gene

Lj2g3v2379070.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2379070.1 tr|J3SFI5|J3SFI5_CROAD tRNA pseudouridine
synthase OS=Crotalus adamanteus PE=2 SV=1,31.35,2e-18,Pseudouridine
synthase,Pseudouridine synthase, catalytic domain; no
description,Pseudouridine syntha,CUFF.38916.1
         (498 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30320.1 | Symbols:  | Pseudouridine synthase family protein ...   476   e-134
AT1G20370.1 | Symbols:  | Pseudouridine synthase family protein ...    76   4e-14
AT1G76120.1 | Symbols:  | Pseudouridine synthase family protein ...    76   6e-14
AT1G76120.2 | Symbols:  | Pseudouridine synthase family protein ...    75   8e-14
AT5G35400.2 | Symbols:  | Pseudouridine synthase family protein ...    50   4e-06
AT5G35400.1 | Symbols:  | Pseudouridine synthase family protein ...    49   6e-06

>AT2G30320.1 | Symbols:  | Pseudouridine synthase family protein |
           chr2:12925728-12927896 REVERSE LENGTH=510
          Length = 510

 Score =  476 bits (1226), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 248/438 (56%), Positives = 305/438 (69%), Gaps = 13/438 (2%)

Query: 52  DKWEPFLKKTVVMRVGYVGTDYRGLQIQRDEHRLSTIEKELETAIYKAGGIRDSNFGDLD 111
           DKWE + KK VV+R+GYVGTDYRGLQIQRD+  + TIE ELE AIYKAGGIRDSN+GDL 
Sbjct: 55  DKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLH 114

Query: 112 KVKWGRSSRTDKGVHSLATMISFKMEIPEDAWKEDRDGVVLANRINIYLPNTIRVFGILP 171
           K+ W RSSRTDKGVHSLAT IS KMEIPE AWK+D  G VLA  I+ +LP  IRVF +LP
Sbjct: 115 KIGWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLP 174

Query: 172 SKKRFDPRRECNLRKYSYLLPADIIGIQSHFSEDEIDFHISEFNSLLSAFEGEHPFHNYT 231
           S +RFDPRREC LRKYSYLLP D++GI++ F+ DEID+HI++FN +L  FEGE+PFHNYT
Sbjct: 175 SNRRFDPRRECTLRKYSYLLPVDVLGIKNSFTSDEIDYHITDFNEILKEFEGEYPFHNYT 234

Query: 232 VRSKYRKKHHARKSPGNG--IMSNKTGXXXXXXXXXXXXXXXDVDDFVSTTLGDKDQXXX 289
            RS+YR+K   +    NG      K+                  ++      G+ D+   
Sbjct: 235 QRSRYRRKSEQKIKQRNGRPPREPKSIKASESEFREENHIEIGEEEEEKEVDGESDEHVV 294

Query: 290 XXXXXXXNDFSHQNSSLVVRARWLYEPDEADRLNVSHFRKISQCSCGKLQRLLGKDYVEI 349
                        NS +  RA+WLYEPDE D+++ +HFRK+ +C  GKL+  LG  +VEI
Sbjct: 295 TP--------DSDNSQVYSRAKWLYEPDETDKISGAHFRKVFRCRSGKLENSLGFGFVEI 346

Query: 350 KIWGDSFMLHQIRKMVGTAVAVKRNLIPRDILSLSLIKFTRIVLPLAPPEVLILRGNTFS 409
            IWG+SFMLHQIRKM+GTAVAVKR L+PRDI+ LSL KFTRIVLPLAP EVLILRGN+F 
Sbjct: 347 SIWGESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNKFTRIVLPLAPSEVLILRGNSFE 406

Query: 410 MRSSAGKFIRPEMVSLVESEPILNEVEEFYTSVMLPELSKFLDSSKSPWVEWVERLDKYS 469
           +R       RP M +  ESE +  E+EEFY +VM+P++S FLDS KSPW EWV+ LD+  
Sbjct: 407 VRRLPE---RPGMEATGESEEVEKEIEEFYRAVMVPQVSIFLDSEKSPWKEWVDHLDRND 463

Query: 470 SFADAELDEVRMAWRTWK 487
              D EL++VR  W  WK
Sbjct: 464 GLIDEELEDVRKGWEEWK 481


>AT1G20370.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:7051846-7053588 REVERSE LENGTH=549
          Length = 549

 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 12/136 (8%)

Query: 57  FLKKTVVMRVGYVGTDYRGLQIQRDEHRLSTIEKELETAIYKAGGIRDSNFGDLDKVKWG 116
           + ++ V +   + G  Y+G+Q         TIE ELE A++ AG + D++       +W 
Sbjct: 55  YRRRKVAIVFAFCGVGYQGMQKNPG---AKTIEGELEEALFHAGAVPDADRNKPRNYEWA 111

Query: 117 RSSRTDKGVHSLATMISFKMEIPEDAWKEDRDGVVLANRINIYLPNTIRVFGILPSKKRF 176
           RS+RTDKGV ++  ++S +  +       D  G V   R+N  LP+ IRVFG       F
Sbjct: 112 RSARTDKGVSAVGQVVSGRFYV-------DPPGFV--ERLNSKLPDQIRVFGYKRVAPSF 162

Query: 177 DPRRECNLRKYSYLLP 192
             ++ C+ R+Y YL+P
Sbjct: 163 SSKKFCDRRRYVYLIP 178



 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 42/63 (66%)

Query: 341 LLGKDYVEIKIWGDSFMLHQIRKMVGTAVAVKRNLIPRDILSLSLIKFTRIVLPLAPPEV 400
           L GKD+V+ ++ G SFMLHQIRKM+G AVA+ RN  P  ++  S  K  RI +P+AP   
Sbjct: 363 LDGKDFVKCEVVGQSFMLHQIRKMIGLAVAIMRNYAPESLIEASFKKDVRINVPMAPEVG 422

Query: 401 LIL 403
           L L
Sbjct: 423 LYL 425


>AT1G76120.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:28558813-28560294 REVERSE LENGTH=463
          Length = 463

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 12/142 (8%)

Query: 60  KTVVMRVGYVGTDYRGLQIQRDEHRLSTIEKELETAIYKAGGIRDSNFGDLDKVKWGRSS 119
           + V +   + G  Y+G+Q         TIE ELE A++ AG + +S  G      + RS+
Sbjct: 22  QKVAIIFAFCGVGYQGMQ---KNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSA 78

Query: 120 RTDKGVHSLATMISFKMEIPEDAWKEDRDGVVLANRINIYLPNTIRVFGILPSKKRFDPR 179
           RTDKGV ++  ++S +  +         D +   NR+N  LPN IR+FG       F  +
Sbjct: 79  RTDKGVSAVGQVVSGRFIV---------DPLGFVNRLNSNLPNQIRIFGYKHVTPSFSSK 129

Query: 180 RECNLRKYSYLLPADIIGIQSH 201
           + C+ R+Y YLLP   +   SH
Sbjct: 130 KFCDRRRYVYLLPVFALDPISH 151



 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%)

Query: 328 RKISQCSCGKLQRLLGKDYVEIKIWGDSFMLHQIRKMVGTAVAVKRNLIPRDILSLSLIK 387
           R+I   +   +  L G D+++ ++ G SFMLHQIRKM+G AVA+ RN     ++  +  K
Sbjct: 297 RQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNCASESLIQSAFSK 356

Query: 388 FTRIVLPLAPPEVLIL 403
              I +P+AP   L L
Sbjct: 357 DVNITVPMAPEVGLYL 372


>AT1G76120.2 | Symbols:  | Pseudouridine synthase family protein |
           chr1:28559224-28560294 REVERSE LENGTH=356
          Length = 356

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 12/163 (7%)

Query: 60  KTVVMRVGYVGTDYRGLQIQRDEHRLSTIEKELETAIYKAGGIRDSNFGDLDKVKWGRSS 119
           + V +   + G  Y+G+Q         TIE ELE A++ AG + +S  G      + RS+
Sbjct: 22  QKVAIIFAFCGVGYQGMQ---KNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSA 78

Query: 120 RTDKGVHSLATMISFKMEIPEDAWKEDRDGVVLANRINIYLPNTIRVFGILPSKKRFDPR 179
           RTDKGV ++  ++S +  +         D +   NR+N  LPN IR+FG       F  +
Sbjct: 79  RTDKGVSAVGQVVSGRFIV---------DPLGFVNRLNSNLPNQIRIFGYKHVTPSFSSK 129

Query: 180 RECNLRKYSYLLPADIIGIQSHFSEDEIDFHISEFNSLLSAFE 222
           + C+ R+Y YLLP   +   SH   + +   +      +  FE
Sbjct: 130 KFCDRRRYVYLLPVFALDPISHRDRETVMASLGPGEEYVKCFE 172


>AT5G35400.2 | Symbols:  | Pseudouridine synthase family protein |
           chr5:13599416-13602240 REVERSE LENGTH=471
          Length = 471

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 63/150 (42%), Gaps = 24/150 (16%)

Query: 53  KWEPFLKKTVVMRVGYVGTDYRGLQIQRDEHRL-STIEKELETAIYKAGGIRDSNFGDLD 111
           +WE    K V+    Y G  + G Q Q D H +   +EK L       GG  D     L 
Sbjct: 89  RWERVNFKIVL---SYNGASFDGWQKQPDLHTVQGVVEKSL-------GGFVDERKAQLL 138

Query: 112 KVKW----GR---SSRTDKGVHSLATMISFKMEIPEDAWKEDRDGVVLANRINIYLPNTI 164
           K K     GR   + RTDKGV +L  + SF        W++D + + + + IN      +
Sbjct: 139 KKKCKPLEGRVLVAGRTDKGVSALNQVCSFY------TWRKDIEPIAIEDAINKDASGKL 192

Query: 165 RVFGILPSKKRFDPRRECNLRKYSYLLPAD 194
           RV  I    + F P      R+Y Y+ P D
Sbjct: 193 RVVSISKVSRSFHPNFSAKWRRYLYIFPLD 222


>AT5G35400.1 | Symbols:  | Pseudouridine synthase family protein |
           chr5:13599416-13602240 REVERSE LENGTH=420
          Length = 420

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 22/149 (14%)

Query: 53  KWEPFLKKTVVMRVGYVGTDYRGLQIQRDEHRLSTIEKELETAIYKAGGIRDSNFGDLDK 112
           +WE    K V+    Y G  + G Q Q D H   T++  +E ++   GG  D     L K
Sbjct: 89  RWERVNFKIVL---SYNGASFDGWQKQPDLH---TVQGVVEKSL---GGFVDERKAQLLK 139

Query: 113 VKW----GR---SSRTDKGVHSLATMISFKMEIPEDAWKEDRDGVVLANRINIYLPNTIR 165
            K     GR   + RTDKGV +L  + SF        W++D + + + + IN      +R
Sbjct: 140 KKCKPLEGRVLVAGRTDKGVSALNQVCSFY------TWRKDIEPIAIEDAINKDASGKLR 193

Query: 166 VFGILPSKKRFDPRRECNLRKYSYLLPAD 194
           V  I    + F P      R+Y Y+ P D
Sbjct: 194 VVSISKVSRSFHPNFSAKWRRYLYIFPLD 222