Miyakogusa Predicted Gene

Lj2g3v2365910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2365910.1 Non Chatacterized Hit- tr|Q2QXX8|Q2QXX8_ORYSJ
Retrotransposon protein, putative, unclassified
OS=Ory,43.4,0.000000000000001,PREDICTED PROTEIN (FRAGMENT),NULL;
GAG-POL-RELATED
RETROTRANSPOSON,NULL,gene.Ljchr2_pseudomol_20120830.path1.gene6366.1
         (170 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like p...    47   5e-06

>AT4G23160.1 | Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like
           protein kinase) 8 | chr4:12129485-12134086 FORWARD
           LENGTH=1262
          Length = 1262

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 68  SKHQQFLDLQQ-RPKYWALARVRSELLWLHRLFHAFGEGIAS-VIVYSDNVSAIALASNP 125
           SK QQ +       +Y AL+    E++WL + F      ++   +++ DN +AI +A+N 
Sbjct: 476 SKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNA 535

Query: 126 TSHERSKHVDIDVHFIGEH 144
             HER+KH++ D H + E 
Sbjct: 536 VFHERTKHIESDCHSVRER 554