Miyakogusa Predicted Gene

Lj2g3v2365820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2365820.1 Non Chatacterized Hit- tr|I1JHJ0|I1JHJ0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55659 PE,91.38,0,SMALL
NUCLEAR RIBONUCLEOPROTEIN,NULL; U1 SMALL NUCLEAR RIBONUCLEOPROTEIN
A/U2 SMALL NUCLEAR RIBONUCL,CUFF.38896.1
         (231 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprotei...   323   8e-89
AT1G06960.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   320   5e-88
AT1G06960.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   315   1e-86
AT1G06960.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   258   3e-69
AT2G47580.1 | Symbols: U1A | spliceosomal protein U1A | chr2:195...   238   3e-63
AT5G19350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    49   3e-06
AT5G19350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    49   3e-06

>AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprotein B
           | chr2:12905557-12907434 REVERSE LENGTH=232
          Length = 232

 Score =  323 bits (827), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 156/235 (66%), Positives = 189/235 (80%), Gaps = 7/235 (2%)

Query: 1   MLSGDIPPSQTIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFS 60
           ML+ DIPP+Q+IYI+NLNE++KK+ELKRSLYCLFSQ+GRILDVVALKTPKLRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVPSASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSYVPXXXXXXXXXXXXXXXXX 120
           EV +A +AVRQMQNFPFY+KPMR+QYAK KSDC+AK EG++VP                 
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVP-KDKKRKQEEKVERKRE 119

Query: 121 XTQQPAPANGTHG----ASNGGPTASFRPGVGAQEAAAPNNILFIENLPYETTGRMLEML 176
            +Q+P  ANG       A+NG P  SF+P    QE   PNNILFI+NLP+ETT  ML++L
Sbjct: 120 DSQRPNTANGPSANGPSANNGVPAPSFQP--SGQETMPPNNILFIQNLPHETTSMMLQLL 177

Query: 177 FEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMIITFAKK 231
           FEQYPGFKE+R+I+AKPGIAFV++ED+VQ+S+AMQ LQGFKITPQNPM+I+FAKK
Sbjct: 178 FEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232


>AT1G06960.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:2135930-2137533 FORWARD LENGTH=229
          Length = 229

 Score =  320 bits (820), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 156/232 (67%), Positives = 184/232 (79%), Gaps = 4/232 (1%)

Query: 1   MLSGDIPPSQTIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFS 60
           ML+ DIPP+Q+IYIK++NEK+KK+ELKRSLYCLFSQ+GR+LDVVALKTPKLRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVPSASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSYVP-XXXXXXXXXXXXXXXX 119
           EV +ASNAVRQMQNFPFY+KPMRIQYAK+KSD + K EGS+VP                 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 120 XXTQQPAPANGTHGASNGGPTASFRPGVGAQEAAAPNNILFIENLPYETTGRMLEMLFEQ 179
             TQQP+  NG     NG P   F+P    Q+   PNNILFI NLP ET   ML++LFEQ
Sbjct: 121 EETQQPSMPNGA-TTQNGMPVPPFQP--SGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 177

Query: 180 YPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMIITFAKK 231
           YPGFKE+R+IEAKPGIAFV++ED+VQSSMAMQALQGFKITPQNPM+++FAKK
Sbjct: 178 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229


>AT1G06960.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:2135930-2137533 FORWARD LENGTH=228
          Length = 228

 Score =  315 bits (808), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 156/232 (67%), Positives = 184/232 (79%), Gaps = 5/232 (2%)

Query: 1   MLSGDIPPSQTIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFS 60
           ML+ DIPP+Q+IYIK++NEK+KK+ELKRSLYCLFSQ+GR+LDVVALKTPKLRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVPSASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSYVP-XXXXXXXXXXXXXXXX 119
           EV +ASNAVRQMQNFPFY+KPMRIQYAK+KSD + K EGS+VP                 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 120 XXTQQPAPANGTHGASNGGPTASFRPGVGAQEAAAPNNILFIENLPYETTGRMLEMLFEQ 179
             TQQP+  NG     NG P   F+P    Q+   PNNILFI NLP ET   ML++LFEQ
Sbjct: 121 EETQQPSMPNGA-TTQNGMP-PPFQP--SGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 176

Query: 180 YPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMIITFAKK 231
           YPGFKE+R+IEAKPGIAFV++ED+VQSSMAMQALQGFKITPQNPM+++FAKK
Sbjct: 177 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228


>AT1G06960.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:2135982-2137533 FORWARD LENGTH=200
          Length = 200

 Score =  258 bits (658), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/197 (64%), Positives = 150/197 (76%), Gaps = 4/197 (2%)

Query: 36  QYGRILDVVALKTPKLRGQAWVCFSEVPSASNAVRQMQNFPFYEKPMRIQYAKTKSDCIA 95
           ++GR+LDVVALKTPKLRGQAWV F+EV +ASNAVRQMQNFPFY+KPMRIQYAK+KSD + 
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 96  KEEGSYVPXXXXXXXXXXX-XXXXXXXTQQPAPANGTHGASNGGPTASFRPGVGAQEAAA 154
           K EGS+VP                   TQQP+  NG     NG P   F+P    Q+   
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMPNGA-TTQNGMPVPPFQPS--GQDTMP 123

Query: 155 PNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQ 214
           PNNILFI NLP ET   ML++LFEQYPGFKE+R+IEAKPGIAFV++ED+VQSSMAMQALQ
Sbjct: 124 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 183

Query: 215 GFKITPQNPMIITFAKK 231
           GFKITPQNPM+++FAKK
Sbjct: 184 GFKITPQNPMVVSFAKK 200


>AT2G47580.1 | Symbols: U1A | spliceosomal protein U1A |
           chr2:19517229-19518686 FORWARD LENGTH=250
          Length = 250

 Score =  238 bits (607), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/239 (53%), Positives = 160/239 (66%), Gaps = 13/239 (5%)

Query: 5   DIPPSQTIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVPS 64
           ++ P+QTIYI NLNEKVK DELK+SL  +FSQ+G+IL+++A KT K +GQAWV F    S
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSYVPXXXXXXXXX-----XXXXXXX 119
           AS A+ +M NFPFY+K MRIQYAKTKSD +AK +G++VP                     
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 120 XXTQQPAPANGTH-GASNGGPTASFRPGVGA------QEAAAPNNILFIENLPYETTGRM 172
             TQ   P N  + G     P  S  P  G       +  A PNNILF++NLP+ETT  +
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 173 LEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMIITFAKK 231
           L+MLF QY GFKEVR+IEAKPGIAFV+F DE+QS++AMQ LQGFKI  QN M+IT+AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250


>AT5G19350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:6518978-6521295 FORWARD LENGTH=421
          Length = 421

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 7/78 (8%)

Query: 11  TIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVPSASNAVR 70
           TI + NL++ V ++ELK++    FSQ G   +V+ +K P  +G  +V F   PSA  AV+
Sbjct: 234 TISVANLDQNVTEEELKKA----FSQLG---EVIYVKIPATKGYGYVQFKTRPSAEEAVQ 286

Query: 71  QMQNFPFYEKPMRIQYAK 88
           +MQ     ++ +RI ++K
Sbjct: 287 RMQGQVIGQQAVRISWSK 304


>AT5G19350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:6518978-6521295 FORWARD LENGTH=425
          Length = 425

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 7/78 (8%)

Query: 11  TIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVPSASNAVR 70
           TI + NL++ V ++ELK++    FSQ G   +V+ +K P  +G  +V F   PSA  AV+
Sbjct: 238 TISVANLDQNVTEEELKKA----FSQLG---EVIYVKIPATKGYGYVQFKTRPSAEEAVQ 290

Query: 71  QMQNFPFYEKPMRIQYAK 88
           +MQ     ++ +RI ++K
Sbjct: 291 RMQGQVIGQQAVRISWSK 308