Miyakogusa Predicted Gene

Lj2g3v2365720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2365720.1 tr|G7K5S4|G7K5S4_MEDTR Cation proton exchanger
OS=Medicago truncatula GN=MTR_5g074320 PE=4 SV=1,66,0.0000000005,
,CUFF.38881.1
         (56 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G13620.1 | Symbols: ATCHX15, CHX15 | cation/hydrogen exchange...    51   2e-07

>AT2G13620.1 | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger
           15 | chr2:5678006-5680621 FORWARD LENGTH=821
          Length = 821

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 12  HTEENTPSILNLLEISNPTRETPICFYVLHLNLLIVRSGPLFI 54
           HT  N P+I+NLLE S+PT+ +PIC YVLHL  L  R+  + I
Sbjct: 462 HTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLI 504