Miyakogusa Predicted Gene
- Lj2g3v2353630.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2353630.1 tr|G7JZQ0|G7JZQ0_MEDTR Sorting nexin-1
OS=Medicago truncatula GN=MTR_5g073280 PE=4 SV=1,85.31,0,PX
domain,Phox homologous domain; BAR/IMD domain-like,NULL; no
description,Phox homologous domain; P,CUFF.38876.1
(592 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07120.1 | Symbols: SNX2b | sorting nexin 2B | chr5:2207065-2... 709 0.0
AT5G58440.1 | Symbols: SNX2a | sorting nexin 2A | chr5:23624154-... 692 0.0
AT5G06140.1 | Symbols: SNX1, ATSNX1 | sorting nexin 1 | chr5:185... 127 2e-29
AT5G37050.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 65 1e-10
>AT5G07120.1 | Symbols: SNX2b | sorting nexin 2B |
chr5:2207065-2209355 REVERSE LENGTH=572
Length = 572
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/489 (71%), Positives = 400/489 (81%), Gaps = 3/489 (0%)
Query: 106 SNPNSHD-TSSYLATPSYADAVFSPFDGETASNCVXXXXXXXXXXXXXXXXXXXXEYLKI 164
S PN D SSYL PSYAD +FSPFD + N +Y+KI
Sbjct: 85 SKPNGGDRVSSYLEPPSYADVIFSPFDDISEINGSEDGHSQSSDSLSRSPSSLSSDYIKI 144
Query: 165 TVSNPVKEQENSNSIVPGGSSYVTYLITTRTNVLEFGGSEFAVRRRFRDIVTLSDRLSEA 224
TVSNP KEQE +NS++PGGS+Y+TY ITTRTN+ ++GGSEF+VRRRFRDIVTL+DRL+E+
Sbjct: 145 TVSNPQKEQEATNSMIPGGSTYITYQITTRTNLSDYGGSEFSVRRRFRDIVTLADRLAES 204
Query: 225 YRGFFIPPRPDKSIVESQVMQKQEFVEQRRVALEKYLRRLADHPVIRKSDEFRVFLQVQG 284
YRGF IPPRPDKSIVESQVMQKQEFVEQRRVALEKYLRRL HPVIR SDE +VFLQ QG
Sbjct: 205 YRGFCIPPRPDKSIVESQVMQKQEFVEQRRVALEKYLRRLVAHPVIRNSDELKVFLQAQG 264
Query: 285 RMPLPLTTDVASRVLDGAAKLPKQLLGESVIAPH-EVVQPAKGGRDLMRLFKELKQSMAN 343
++PL +TDVASR+LDGA KLPKQL GE A EVVQP +GGRD +R+FKEL+QS++N
Sbjct: 265 KLPLATSTDVASRMLDGAVKLPKQLFGEGGGASSVEVVQPGRGGRDFLRMFKELRQSVSN 324
Query: 344 DWGGSKPPVVEEDKEFLEKKERIQELEQQINGASQQAESLVKAQQDMGETLGELGLAFIK 403
DWGGSKPPVVEEDKEFLEKKE++ +LEQQI ASQQAESLVKAQQDMGET+GELGLAFIK
Sbjct: 325 DWGGSKPPVVEEDKEFLEKKEKMYDLEQQIINASQQAESLVKAQQDMGETMGELGLAFIK 384
Query: 404 LTKFENEEAVLNSQRVRATDMKGVATAAVKASRLYRELNAQTVKHLQDTLHEYLGLMLAV 463
LTKFENEEAV NSQR RA DMK +AT+AVKASR YRELN+QTVKHL DTLH+YLGLM+AV
Sbjct: 385 LTKFENEEAVFNSQRARANDMKNLATSAVKASRFYRELNSQTVKHL-DTLHDYLGLMMAV 443
Query: 464 HSAFSDRSSAXXXXXXXXXXXXXXXXRAEKLEAASSKIFGGDKSRIRKLEELQETIRVTE 523
AF+DRSSA RAEKLE ASSK+FGGDKSRI+K+EEL+ETI+VTE
Sbjct: 444 QGAFADRSSALLTVQTLLSELSSLEARAEKLEVASSKVFGGDKSRIKKIEELKETIKVTE 503
Query: 524 DAKNIAIREYERIKENNRSELERLDSERQADFLNMLKGFVVNQVGYAEKIANVWTKVAEE 583
D+KN+AIREYE+IKENN SE+ERLD ER+ADFLNM+KGFV NQVGYAEKIANVWTKVAEE
Sbjct: 504 DSKNVAIREYEQIKENNWSEVERLDRERRADFLNMMKGFVANQVGYAEKIANVWTKVAEE 563
Query: 584 TRKYVNEST 592
TR+Y ES+
Sbjct: 564 TRQYDRESS 572
>AT5G58440.1 | Symbols: SNX2a | sorting nexin 2A |
chr5:23624154-23626676 REVERSE LENGTH=587
Length = 587
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/485 (71%), Positives = 395/485 (81%), Gaps = 10/485 (2%)
Query: 114 SSYLATPSYADAVFSPFDGETASNCVXXXXXXXXXX----XXXXXXXXXXEYLKITVSNP 169
+SY+ PSYAD +FSPFD + S +Y+KITVSNP
Sbjct: 101 NSYIEPPSYADVIFSPFDENSDSEINGTEDNSLHSQFSDSLSRSPSSSSSDYIKITVSNP 160
Query: 170 VKEQENSNSIVPGGSSYVTYLITTRTNVLEFGG-SEFAVRRRFRDIVTLSDRLSEAYRGF 228
KEQE SNSIV GG++Y+TY ITTRTN+ +FGG SEF+VRRRFRD+VTL+DRL+E YRGF
Sbjct: 161 QKEQEISNSIV-GGNTYITYQITTRTNLPDFGGPSEFSVRRRFRDVVTLADRLAETYRGF 219
Query: 229 FIPPRPDKSIVESQVMQKQEFVEQRRVALEKYLRRLADHPVIRKSDEFRVFLQVQGRMPL 288
IPPRPDKS+VESQVMQKQEFVEQRRVALEKYLRRL+ HPVIR SDE +VFLQVQG++PL
Sbjct: 220 CIPPRPDKSVVESQVMQKQEFVEQRRVALEKYLRRLSAHPVIRNSDELKVFLQVQGKLPL 279
Query: 289 PLTTDVASRVLDGAAKLPKQLLGE---SVIAPHEVVQPAKGGRDLMRLFKELKQSMANDW 345
P++TDVASR+LDGA KLPKQL GE S + EV QPA+GGRDL+RLFKEL+QS++NDW
Sbjct: 280 PMSTDVASRMLDGAVKLPKQLFGEGGASAVPVTEVGQPARGGRDLLRLFKELRQSVSNDW 339
Query: 346 GGSKPPVVEEDKEFLEKKERIQELEQQINGASQQAESLVKAQQDMGETLGELGLAFIKLT 405
GGSKPPVVEEDKEFLEKKE++ +LEQQI ASQQAESLVKAQQDMGET+GELGLAFIKLT
Sbjct: 340 GGSKPPVVEEDKEFLEKKEKMHDLEQQIINASQQAESLVKAQQDMGETMGELGLAFIKLT 399
Query: 406 KFENEEAVLNSQRVRATDMKGVATAAVKASRLYRELNAQTVKHLQDTLHEYLGLMLAVHS 465
KFENEEAV N QR RA DMK +ATAAVKASR YRELN+QTVKHL DTLHEYLG+M+AV
Sbjct: 400 KFENEEAVCNPQRTRANDMKNLATAAVKASRFYRELNSQTVKHL-DTLHEYLGMMMAVQG 458
Query: 466 AFSDRSSAXXXXXXXXXXXXXXXXRAEKLEAASSKIFGGDKSRIRKLEELQETIRVTEDA 525
AF+DRSSA R EKLEAASSK+FGGDKSRIRK+EEL+ETI+VTEDA
Sbjct: 459 AFADRSSALLTVQTLLSELPSLQTRVEKLEAASSKVFGGDKSRIRKIEELKETIKVTEDA 518
Query: 526 KNIAIREYERIKENNRSELERLDSERQADFLNMLKGFVVNQVGYAEKIANVWTKVAEETR 585
KN+AI+ YERIKENNRSE+ERLD ER+ADF+NM+KGFVVNQVGYAEK+ NVW KVAEET
Sbjct: 519 KNVAIKGYERIKENNRSEVERLDRERRADFMNMMKGFVVNQVGYAEKMGNVWAKVAEETS 578
Query: 586 KYVNE 590
+Y E
Sbjct: 579 QYDRE 583
>AT5G06140.1 | Symbols: SNX1, ATSNX1 | sorting nexin 1 |
chr5:1856212-1858752 REVERSE LENGTH=402
Length = 402
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/420 (26%), Positives = 189/420 (45%), Gaps = 58/420 (13%)
Query: 161 YLKITVSNPVKEQENSNSIVPGGSSYVTYLITTRTNVLEFGGSEFAVRRRFRDIVTLSDR 220
YL ++V++PVK + G +Y++Y + T+TN+ E+ G E V RR+ D V L DR
Sbjct: 25 YLSVSVTDPVK-------LGNGVQAYISYRVITKTNLPEYQGPEKIVIRRYSDFVWLRDR 77
Query: 221 LSEAYRGFFIPPRPDKSIVESQVMQKQEFVEQRRVALEKYLRRLADHPVIRKSDEFRVFL 280
L E Y+G FIPP P+KS VE + EF+E RR AL+ ++ R+A HP +++S++ R FL
Sbjct: 78 LFEKYKGIFIPPLPEKSAVE-KFRFSAEFIEMRRAALDIFVNRIALHPELQQSEDLRTFL 136
Query: 281 QVQGRMPLPLTTDVASRVLDGAAKLPKQLLGESVIAPHEVVQPAKGGRDLMRLFKELKQS 340
Q T D + E+ I +PA DLM++F++++
Sbjct: 137 QADEE-----TMD-------------RFRFQETSI----FKKPA----DLMQMFRDVQSK 170
Query: 341 MANDWGGSKPPVVEEDKEFLEKKERIQELEQQINGASQQAESLVKAQQDMGETLGELGLA 400
+++ G + PV E ++ + K I ELE + A + A LVK +++G++L + G A
Sbjct: 171 VSDAVLGKEKPVEETTADYEKLKHYIFELENHLTEAQKHAYRLVKRHRELGQSLLDFGKA 230
Query: 401 FIKLTKFENEEAVLNSQRVRATDMKGVATAAVKASRLYRELNA---QTVKHLQDTLHEYL 457
L E E K + K+ L +L Q + + ++ L +Y+
Sbjct: 231 VKLLGACEGEPT-----------GKAFSDLGTKSELLSIKLQKEAQQVLMNFEEPLKDYV 279
Query: 458 GLMLAVHSAFSDRSSAXXXXXXXXXXXXXXXXRAEKLEAASSKIFGGDKSRIRKLEELQE 517
+ ++ + ++R +A +KL S G + R+++ E
Sbjct: 280 RYVQSIKATIAERGTAFKQHCELSETTKLKEINLDKLMLTRSDKVGEAEIEYREIKAESE 339
Query: 518 TIRVTEDAKNIAIREYERIKENNRSELERLDSERQADFLNMLKGFVVNQVGYAEKIANVW 577
A R +ERI + E+ R ++ + F Q A +A+ W
Sbjct: 340 E----------ATRRFERIVKRMEDEIVRFQEQKTEEMGVAFHQFAKGQARLANSVADAW 389
>AT5G37050.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; BEST Arabidopsis thaliana protein match is:
sorting nexin 2A (TAIR:AT5G58440.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:14640510-14641421 REVERSE LENGTH=165
Length = 165
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 67/141 (47%), Gaps = 44/141 (31%)
Query: 257 LEKYLRRLADHPVIRKSDEFRVFLQVQGRMPLPLTTDVASRVLDGAAKLPKQLLGE---S 313
L + LR A PV S FR+ ++TDVAS +LDG K+PKQL G S
Sbjct: 28 LSRTLRTSAGPPVA-SSSLFRMLATTN------VSTDVASMMLDGTVKIPKQLFGNGGAS 80
Query: 314 VIAPHEVVQPAKGGRDLMRLFKELKQSMANDWGGSKPPVVEEDKEFLEKKERIQELEQQI 373
+ HE+VQPA+G DK+FLEKKE++ +LEQQI
Sbjct: 81 AMPVHELVQPARG-----------------------------DKKFLEKKEKMHDLEQQI 111
Query: 374 NGASQQAE-----SLVKAQQD 389
ASQQ ++KA QD
Sbjct: 112 INASQQDTLHEYFGMMKAVQD 132